4.0:Information of module
control leaf (cmt 1d)
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009827 plant-type cell wall modification BP 6.485e-05
GO:0006863 purine nucleobase transport BP 4.475e-04
GO:0015851 nucleobase transport BP 4.475e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0033554 cellular response to stress BP 4.836e-03
GO:0070647 protein modification by small protein co... BP 1.217e-02
GO:0043412 macromolecule modification BP 1.295e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
control leaf (cmt 1d)		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 248949_at AT5G45570 [Ulp1 protease family protein] 1.289 -0.507
2 246888_at AT5G26270 unknown 1.163 0.325
3 251458_at AT3G60170 [copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.734 0.240
4 246869_at AT5G26020 [similar to Glutamic acid-rich protein precursor (GB:P13816)] 0.731 -1.030
5 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.638 -0.442
6 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.545 0.204
7 266807_at AT2G29920 unknown 0.500 -0.724
8 265503_at AT2G15510 [non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)] 0.472 -0.315
9 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.457 -0.328
10 250979_at AT5G03090 unknown 0.346 0.141
11 259584_at AT1G28080 [RING finger protein] 0.198 -0.463
12 260557_at AT2G43610 [Chitinase family protein] 0.194 0.716
13 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 0.187 -0.311
14 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein 0.183 0.546
15 258354_at AT3G14320 [Zinc finger, C3HC4 type (RING finger) family protein] 0.175 -0.219
16 264358_at AT1G03180 unknown 0.175 0.573
17 250770_at AT5G05390 LAC12, laccase 12 0.175 0.307
18 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H 0.174 0.111
19 248113_at AT5G55360 [MBOAT (membrane bound O-acyl transferase) family protein] 0.170 0.031
20 258199_at AT3G14030 [F-box associated ubiquitination effector family protein] 0.160 -0.826
21 250136_at AT5G15380 DRM1, domains rearranged methylase 1 0.160 -0.360
22 254237_at AT4G23520 [Cysteine proteinases superfamily protein] 0.158 -1.268
23 250171_at AT5G14300 ATPHB5, prohibitin 5, PHB5, prohibitin 5 0.152 -0.358
24 255761_at AT1G16770 unknown 0.151 -0.662
25 248926_at AT5G45880 [Pollen Ole e 1 allergen and extensin family protein] 0.151 -1.122
26 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.148 -0.288
27 258240_at AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 0.145 0.964
28 258267_at AT3G15870 [Fatty acid desaturase family protein] 0.145 -0.677
29 250251_at AT5G13670 UMAMIT15, Usually multiple acids move in and out Transporters 15 0.142 -0.112
30 252301_at AT3G49162 0.142 -1.106
31 254009_at AT4G26390 [Pyruvate kinase family protein] 0.142 -0.231
32 261473_at AT1G14490 AHL28, AT-hook motif nuclear localized protein 28 0.141 0.239
33 245579_at AT4G14810 unknown -0.173 -0.027
34 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 -0.145 -0.036
35 247491_at AT5G61880 [Protein Transporter, Pam16] -0.136 -0.126
36 263515_at AT2G21640 unknown -0.132 0.586
37 256248_at AT3G66652 [fip1 motif-containing protein] -0.129 -0.295
38 249034_at AT5G44160 AtIDD8, IDD8, INDETERMINATE DOMAIN 8, NUC, nutcracker -0.122 -0.736
39 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.119 -0.663
40 246409_at AT1G57700 [Protein kinase superfamily protein] -0.118 -0.147
41 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.118 -0.011
42 264753_at AT1G61490 [S-locus lectin protein kinase family protein] -0.117 -0.779
43 246325_at AT1G16540 ABA3, ABA DEFICIENT 3, ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, AtLOS5, LOS5, LOW OSMOTIC STRESS 5, SIR3, SIRTINOL RESISTANT 3 -0.114 -0.251
44 266794_at AT2G02980 OTP85, ORGANELLE TRANSCRIPT PROCESSING 85 -0.102 0.132
45 259877_at AT1G76710 ASHH1, ASH1 RELATED PROTEIN 1, ASHH1, ASH1-RELATED PROTEIN 1, SDG26, SET domain group 26 -0.098 0.266
46 245871_at AT1G26290 unknown -0.097 0.675
47 267467_at AT2G30580 BMI1A, DRIP2, DREB2A-interacting protein 2 -0.096 -0.477
48 263032_at AT1G23850 unknown -0.089 0.015
49 256311_at AT1G30330 ARF6, auxin response factor 6 -0.087 0.756
50 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.084 -0.680
51 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.082 -0.536
52 259774_at AT1G29520 [AWPM-19-like family protein] -0.074 -0.049
53 250566_at AT5G08070 TCP17, TCP domain protein 17 -0.071 0.178
54 247239_at AT5G64640 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.067 -0.311
55 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.067 -0.756
56 253089_at AT4G36290 AtMORC1, CRT1, compromised recognition of TCV 1, MORC1, Microchidia 1 -0.062 0.070
57 255169_x_at AT4G07940 unknown -0.060 -0.840
58 264909_at AT2G17300 unknown -0.059 -0.794
59 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 -0.058 -0.166
60 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.058 0.224
61 255702_at AT4G00230 XSP1, xylem serine peptidase 1 -0.056 0.619
62 249650_at AT5G37055 ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING -0.055 -0.250
63 251967_at AT3G53390 [Transducin/WD40 repeat-like superfamily protein] -0.041 -0.095