4.0:Information of module
control leaf (cmt 1d)
In comparison with Indigo Carmine 0.5 uM help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009827 plant-type cell wall modification BP 6.485e-05
GO:0006863 purine nucleobase transport BP 4.475e-04
GO:0015851 nucleobase transport BP 4.475e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0033554 cellular response to stress BP 4.836e-03
GO:0070647 protein modification by small protein co... BP 1.217e-02
GO:0043412 macromolecule modification BP 1.295e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
control leaf (cmt 1d)		 Log2 signal ratio
Indigo Carmine 0.5 uM
1 248949_at AT5G45570 [Ulp1 protease family protein] 1.289 0.046
2 246888_at AT5G26270 unknown 1.163 0.036
3 251458_at AT3G60170 [copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] 0.734 0.012
4 246869_at AT5G26020 [similar to Glutamic acid-rich protein precursor (GB:P13816)] 0.731 -0.045
5 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.638 0.018
6 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.545 0.026
7 266807_at AT2G29920 unknown 0.500 0.072
8 265503_at AT2G15510 [non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)] 0.472 0.024
9 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.457 0.002
10 250979_at AT5G03090 unknown 0.346 0.032
11 259584_at AT1G28080 [RING finger protein] 0.198 0.088
12 260557_at AT2G43610 [Chitinase family protein] 0.194 0.034
13 245546_at AT4G15290 ATCSLB05, ATCSLB5, CELLULOSE SYNTHASE LIKE 5, CSLB05 0.187 0.141
14 251843_x_at AT3G54590 ATHRGP1, hydroxyproline-rich glycoprotein, HRGP1, hydroxyproline-rich glycoprotein 0.183 0.114
15 258354_at AT3G14320 [Zinc finger, C3HC4 type (RING finger) family protein] 0.175 0.028
16 264358_at AT1G03180 unknown 0.175 -0.031
17 250770_at AT5G05390 LAC12, laccase 12 0.175 0.098
18 260300_at AT1G80340 ATGA3OX2, ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, GA3OX2, gibberellin 3-oxidase 2, GA4H 0.174 0.001
19 248113_at AT5G55360 [MBOAT (membrane bound O-acyl transferase) family protein] 0.170 0.061
20 258199_at AT3G14030 [F-box associated ubiquitination effector family protein] 0.160 -0.026
21 250136_at AT5G15380 DRM1, domains rearranged methylase 1 0.160 -0.041
22 254237_at AT4G23520 [Cysteine proteinases superfamily protein] 0.158 0.029
23 250171_at AT5G14300 ATPHB5, prohibitin 5, PHB5, prohibitin 5 0.152 0.172
24 255761_at AT1G16770 unknown 0.151 0.090
25 248926_at AT5G45880 [Pollen Ole e 1 allergen and extensin family protein] 0.151 0.176
26 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.148 0.037
27 258240_at AT3G27660 OLE3, OLEOSIN 3, OLEO4, oleosin 4 0.145 0.115
28 258267_at AT3G15870 [Fatty acid desaturase family protein] 0.145 0.028
29 250251_at AT5G13670 UMAMIT15, Usually multiple acids move in and out Transporters 15 0.142 -0.001
30 252301_at AT3G49162 0.142 -0.009
31 254009_at AT4G26390 [Pyruvate kinase family protein] 0.142 0.033
32 261473_at AT1G14490 AHL28, AT-hook motif nuclear localized protein 28 0.141 0.022
33 245579_at AT4G14810 unknown -0.173 0.053
34 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 -0.145 0.024
35 247491_at AT5G61880 [Protein Transporter, Pam16] -0.136 -0.098
36 263515_at AT2G21640 unknown -0.132 -0.033
37 256248_at AT3G66652 [fip1 motif-containing protein] -0.129 -0.071
38 249034_at AT5G44160 AtIDD8, IDD8, INDETERMINATE DOMAIN 8, NUC, nutcracker -0.122 0.032
39 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] -0.119 -0.169
40 246409_at AT1G57700 [Protein kinase superfamily protein] -0.118 0.007
41 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 -0.118 -0.015
42 264753_at AT1G61490 [S-locus lectin protein kinase family protein] -0.117 -0.033
43 246325_at AT1G16540 ABA3, ABA DEFICIENT 3, ACI2, ALTERED CHLOROPLAST IMPORT 2, ATABA3, AtLOS5, LOS5, LOW OSMOTIC STRESS 5, SIR3, SIRTINOL RESISTANT 3 -0.114 0.034
44 266794_at AT2G02980 OTP85, ORGANELLE TRANSCRIPT PROCESSING 85 -0.102 -0.087
45 259877_at AT1G76710 ASHH1, ASH1 RELATED PROTEIN 1, ASHH1, ASH1-RELATED PROTEIN 1, SDG26, SET domain group 26 -0.098 0.035
46 245871_at AT1G26290 unknown -0.097 0.004
47 267467_at AT2G30580 BMI1A, DRIP2, DREB2A-interacting protein 2 -0.096 -0.001
48 263032_at AT1G23850 unknown -0.089 0.049
49 256311_at AT1G30330 ARF6, auxin response factor 6 -0.087 0.038
50 264931_at AT1G60590 [Pectin lyase-like superfamily protein] -0.084 0.004
51 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.082 0.037
52 259774_at AT1G29520 [AWPM-19-like family protein] -0.074 0.037
53 250566_at AT5G08070 TCP17, TCP domain protein 17 -0.071 0.030
54 247239_at AT5G64640 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.067 -0.013
55 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.067 0.044
56 253089_at AT4G36290 AtMORC1, CRT1, compromised recognition of TCV 1, MORC1, Microchidia 1 -0.062 -0.021
57 255169_x_at AT4G07940 unknown -0.060 0.111
58 264909_at AT2G17300 unknown -0.059 -0.011
59 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 -0.058 -0.033
60 260494_at AT2G41820 PXC3, PXY/TDR-correlated 3 -0.058 -0.016
61 255702_at AT4G00230 XSP1, xylem serine peptidase 1 -0.056 -0.063
62 249650_at AT5G37055 ATSWC6, SEF, SERRATED LEAVES AND EARLY FLOWERING -0.055 0.009
63 251967_at AT3G53390 [Transducin/WD40 repeat-like superfamily protein] -0.041 -0.002