4.0:Information of module
vte1-1 1d vernalization
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006082 organic acid metabolic process BP 5.557e-06
GO:0043436 oxoacid metabolic process BP 9.531e-06
GO:0019748 secondary metabolic process BP 1.273e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 5.734e-12
GO:0009070 serine family amino acid biosynthetic pr... BP 7.629e-12
GO:0044763 single-organism cellular process BP 1.012e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
vte1-1 1d vernalization		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 249456_at AT5G39410 [Saccharopine dehydrogenase ] 0.690 -0.002
2 254440_at AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 0.668 0.009
3 264888_at AT1G23070 unknown 0.596 0.102
4 247953_at AT5G57260 CYP71B10, cytochrome P450, family 71, subfamily B, polypeptide 10 0.304 -0.063
5 257451_at AT1G05690 BT3, BTB and TAZ domain protein 3 0.298 0.054
6 247170_at AT5G65530 [Protein kinase superfamily protein] 0.277 -0.013
7 262120_at AT1G02950 ATGSTF4, glutathione S-transferase F4, GST31, GLUTATHIONE S-TRANSFERASE 31, GSTF4, glutathione S-transferase F4 0.274 0.062
8 251012_at AT5G02580 unknown 0.258 0.111
9 251490_at AT3G59490 unknown 0.256 0.009
10 258036_at AT3G21210 [zinc ion binding] 0.239 0.053
11 256898_at AT3G24650 ABI3, ABA INSENSITIVE 3, ABI3, ABSCISIC ACID INSENSITIVE 3, SIS10, SUGAR INSENSITIVE 10 0.223 0.023
12 260994_at AT1G12130 [Flavin-binding monooxygenase family protein] 0.223 -0.025
13 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.220 0.045
14 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] 0.211 0.039
15 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY 0.210 -0.064
16 252309_at AT3G49340 [Cysteine proteinases superfamily protein] 0.209 0.035
17 247805_at AT5G58180 ATYKT62, YKT62 0.206 0.058
18 254147_at AT4G24270 EMB140, EMBRYO DEFECTIVE 140 0.205 -0.023
19 263138_at AT1G65090 unknown 0.203 -0.005
20 262719_at AT1G43590 unknown 0.202 0.044
21 256412_at AT3G11220 ELO1, ELONGATA 1 0.199 -0.020
22 264720_at AT1G70080 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.195 -0.021
23 246896_at AT5G25550 [Leucine-rich repeat (LRR) family protein] 0.194 0.029
24 249716_at AT5G35770 SAP, STERILE APETALA 0.191 0.041
25 256632_at AT3G28330 [F-box family protein-related] 0.190 0.019
26 259022_at AT3G07420 ATNS2, ASPARAGINYL-TRNA SYNTHETASE 2, NS2, asparaginyl-tRNA synthetase 2, SYNC2, SYNTHETASE C2, SYNC2_ARATH, ASPARAGINYL-TRNA SYNTHETASE 2 0.189 0.034
27 254854_at AT4G12130 [Glycine cleavage T-protein family] 0.189 0.074
28 244909_at ATMG00740 ORF100A 0.187 0.064
29 254672_at AT4G18420 unknown 0.186 0.037
30 257012_at AT3G26120 terminal EAR1-like 1 0.186 0.010
31 252731_at AT3G43130 [pseudogene] 0.184 -0.006
32 264345_at AT1G11915 unknown 0.182 0.056
33 257401_at AT1G23550 SRO2, similar to RCD one 2 0.182 0.037
34 250590_at AT5G07710 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.182 -0.058
35 253299_at AT4G33800 unknown 0.181 0.138
36 267472_at AT2G02850 ARPN, plantacyanin 0.180 -0.008
37 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 0.179 0.036
38 260210_at AT1G74420 ATFUT3, FUT3, fucosyltransferase 3 0.178 0.046
39 252614_at AT3G45220 [Serine protease inhibitor (SERPIN) family protein] 0.177 -0.003
40 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier 0.175 0.034
41 262265_at AT1G42460 [cysteine-type peptidases] 0.175 0.085
42 265008_at AT1G61560 ATMLO6, MILDEW RESISTANCE LOCUS O 6, MLO6, MILDEW RESISTANCE LOCUS O 6 0.174 -0.014
43 263103_at AT2G05290 unknown 0.174 0.002
44 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.173 -0.024
45 257806_at AT3G18670 [Ankyrin repeat family protein] 0.172 0.055
46 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 0.170 -0.012
47 248148_at AT5G54930 [AT hook motif-containing protein] 0.169 -0.016
48 258874_at AT3G03230 [alpha/beta-Hydrolases superfamily protein] 0.169 0.002
49 261075_at AT1G07280 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.169 0.012
50 255090_at AT4G09360 [NB-ARC domain-containing disease resistance protein] 0.167 -0.046
51 252351_at AT3G48210 unknown 0.166 0.040
52 254349_at AT4G22250 [RING/U-box superfamily protein] 0.166 0.105
53 250214_at AT5G13870 EXGT-A4, endoxyloglucan transferase A4, XTH5, xyloglucan endotransglucosylase/hydrolase 5 0.165 0.042
54 262118_at AT1G02850 BGLU11, beta glucosidase 11 0.162 0.009
55 253253_at AT4G34750 SAUR49, SMALL AUXIN UPREGULATED RNA 49 0.162 0.082
56 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.160 0.028
57 257584_at AT1G54955 unknown 0.158 -0.016
58 261192_at AT1G32870 ANAC013, Arabidopsis NAC domain containing protein 13, ANAC13, NAC domain protein 13, NAC13, NAC domain protein 13 0.157 0.041
59 256217_at AT1G56320 unknown 0.156 0.006
60 256588_at AT3G28790 unknown 0.156 -0.003
61 259036_at AT3G09220 LAC7, laccase 7 -0.729 -0.034
62 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 -0.625 0.027
63 260344_at AT1G69240 ATMES15, ARABIDOPSIS THALIANA METHYL ESTERASE 15, MES15, methyl esterase 15, RHS9, ROOT HAIR SPECIFIC 9 -0.584 -0.036
64 255632_at AT4G00680 ADF8, actin depolymerizing factor 8 -0.571 0.033
65 266336_at AT2G32270 ZIP3, zinc transporter 3 precursor -0.567 0.154
66 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.565 0.023
67 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B -0.560 -0.001
68 245504_at AT4G15660 [Thioredoxin superfamily protein] -0.550 0.073
69 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.547 0.019
70 267497_at AT2G30540 [Thioredoxin superfamily protein] -0.533 0.082
71 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 -0.532 -0.026
72 249482_at AT5G38980 unknown -0.522 -0.082
73 247755_at AT5G59090 ATSBT4.12, subtilase 4.12, SBT4.12, subtilase 4.12 -0.509 0.068
74 249756_at AT5G24313 unknown -0.508 0.059
75 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 -0.500 0.056
76 245318_at AT4G16980 [arabinogalactan-protein family] -0.499 -0.050
77 252327_at AT3G48740 AtSWEET11, SWEET11 -0.488 0.045
78 252833_at AT4G40090 AGP3, arabinogalactan protein 3 -0.487 0.009
79 261769_at AT1G76100 PETE1, plastocyanin 1 -0.481 0.106
80 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] -0.468 0.047
81 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.465 0.030
82 260770_at AT1G49200 [RING/U-box superfamily protein] -0.463 0.143
83 260867_at AT1G43790 TED6, tracheary element differentiation-related 6 -0.460 0.075
84 254551_at AT4G19840 ATPP2-A1, phloem protein 2-A1, ATPP2A-1, phloem protein 2-A1, PP2-A1, phloem protein 2-A1 -0.458 0.036
85 250958_at AT5G03260 LAC11, laccase 11 -0.456 -0.072
86 259329_at AT3G16360 AHP4, HPT phosphotransmitter 4 -0.451 0.045
87 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 -0.440 -0.055
88 252199_at AT3G50270 [HXXXD-type acyl-transferase family protein] -0.438 0.019
89 263689_at AT1G26820 RNS3, ribonuclease 3 -0.422 0.046
90 263475_at AT2G31945 unknown -0.420 -0.015
91 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 -0.418 0.005
92 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 -0.410 -0.003
93 247648_at AT5G60020 ATLAC17, LAC17, laccase 17 -0.408 0.037
94 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.401 0.050
95 245506_at AT4G15700 [Thioredoxin superfamily protein] -0.398 -0.000
96 266849_at AT2G25940 ALPHA-VPE, alpha-vacuolar processing enzyme, ALPHAVPE -0.395 0.008
97 255587_at AT4G01480 AtPPa5, pyrophosphorylase 5, PPa5, pyrophosphorylase 5 -0.393 0.027
98 259195_at AT3G01730 unknown -0.388 0.112
99 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.384 0.034
100 263845_at AT2G37040 ATPAL1, PAL1, PHE ammonia lyase 1 -0.383 -0.023
101 251785_at AT3G55130 ABCG19, ATP-binding cassette G19, ATWBC19, white-brown complex homolog 19, WBC19, white-brown complex homolog 19 -0.380 -0.008
102 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.376 -0.028
103 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.368 0.001
104 251723_at AT3G56230 [BTB/POZ domain-containing protein] -0.367 0.037
105 259358_at AT1G13250 GATL3, galacturonosyltransferase-like 3 -0.346 -0.102
106 247304_at AT5G63850 AAP4, amino acid permease 4 -0.346 0.015
107 248028_at AT5G55620 unknown -0.341 -0.031
108 249887_at AT5G22310 unknown -0.340 0.051
109 254931_at AT4G11460 CRK30, cysteine-rich RLK (RECEPTOR-like protein kinase) 30 -0.340 0.051
110 249010_at AT5G44580 unknown -0.337 0.129
111 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 -0.335 0.002
112 250683_x_at AT5G06640 EXT10, extensin 10 -0.335 0.007
113 245765_at AT1G33600 [Leucine-rich repeat (LRR) family protein] -0.333 -0.111
114 267580_at AT2G41990 unknown -0.331 0.051
115 250942_at AT5G03350 [Legume lectin family protein] -0.329 0.030
116 256497_at AT1G31580 CXC750, ECS1 -0.329 0.023
117 251058_at AT5G01790 unknown -0.327 0.146
118 250231_at AT5G13910 LEP, LEAFY PETIOLE -0.317 0.027
119 262288_at AT1G70760 CRR23, CHLORORESPIRATORY REDUCTION 23, NdhL, NADH dehydrogenase-like complex L -0.315 0.024