4.0:Information of module
mdh
In comparison with ddm1 mutant seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001101 response to acid chemical BP 3.613e-23
GO:1901700 response to oxygen-containing compound BP 5.428e-23
GO:0042221 response to chemical BP 1.341e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 4.616e-44
GO:0006091 generation of precursor metabolites and ... BP 2.835e-36
GO:0019684 photosynthesis, light reaction BP 3.313e-36
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
mdh		 Log2 signal ratio
ddm1 mutant seedlings
1 266393_at AT2G41260 ATM17, M17 1.340 0.732
2 256354_at AT1G54870 [NAD(P)-binding Rossmann-fold superfamily protein] 0.998 0.402
3 258327_at AT3G22640 PAP85 0.957 0.335
4 263881_at AT2G21820 unknown 0.841 0.214
5 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.769 -0.075
6 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.761 0.252
7 251838_at AT3G54940 [Papain family cysteine protease] 0.759 0.384
8 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 0.753 0.088
9 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 0.726 0.364
10 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 0.715 0.295
11 262679_at AT1G75830 LCR67, low-molecular-weight cysteine-rich 67, PDF1.1, PLANT DEFENSIN 1.1 0.695 0.341
12 264612_at AT1G04560 [AWPM-19-like family protein] 0.689 0.243
13 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.686 0.209
14 263753_at AT2G21490 LEA, dehydrin LEA 0.655 0.125
15 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.653 0.167
16 264079_at AT2G28490 [RmlC-like cupins superfamily protein] 0.649 0.163
17 255905_at AT1G17810 BETA-TIP, beta-tonoplast intrinsic protein 0.607 -0.044
18 250624_at AT5G07330 unknown 0.600 0.290
19 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.596 0.248
20 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 0.593 -0.023
21 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 0.583 0.441
22 266392_at AT2G41280 ATM10, M10 0.552 0.068
23 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 0.535 0.017
24 262828_at AT1G14950 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.530 0.164
25 264187_at AT1G54860 [Glycoprotein membrane precursor GPI-anchored] 0.514 0.027
26 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 0.513 0.351
27 254095_at AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 0.512 0.129
28 245335_at AT4G16160 ATOEP16-2, ATOEP16-S 0.510 0.075
29 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.501 0.102
30 248125_at AT5G54740 SESA5, seed storage albumin 5 0.501 0.579
31 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.496 0.053
32 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.468 0.098
33 264580_at AT1G05340 unknown 0.466 0.047
34 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 0.465 0.177
35 265255_at AT2G28420 GLYI8, glyoxylase I 8 0.461 0.210
36 251731_at AT3G56350 [Iron/manganese superoxide dismutase family protein] 0.440 0.097
37 259314_at AT3G05260 [NAD(P)-binding Rossmann-fold superfamily protein] 0.429 0.169
38 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] 0.415 0.115
39 259167_at AT3G01570 [Oleosin family protein] 0.383 0.089
40 260803_at AT1G78340 ATGSTU22, glutathione S-transferase TAU 22, GSTU22, glutathione S-transferase TAU 22 0.378 0.114
41 254203_at AT4G24150 AtGRF8, growth-regulating factor 8, GRF8, growth-regulating factor 8 0.375 0.027
42 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 0.374 0.011
43 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.369 -0.046
44 252137_at AT3G50980 XERO1, dehydrin xero 1 0.369 0.135
45 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.362 0.083
46 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.348 -0.476
47 250468_at AT5G10120 [Ethylene insensitive 3 family protein] 0.344 0.088
48 245567_at AT4G14630 GLP9, germin-like protein 9 0.331 0.018
49 266654_at AT2G25890 [Oleosin family protein] 0.326 0.023
50 256938_at AT3G22500 ATECP31, LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31 0.320 0.137
51 263175_at AT1G05510 OBAP1a, Oil Body-Associated Protein 1a 0.316 0.103
52 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.315 0.144
53 259935_at AT1G71250 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.311 0.041
54 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.304 0.054
55 249937_at AT5G22470 [NAD+ ADP-ribosyltransferases] 0.296 0.112
56 264342_at AT1G12080 [Vacuolar calcium-binding protein-related] 0.289 0.003
57 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.287 -0.040
58 259478_at AT1G18980 [RmlC-like cupins superfamily protein] 0.286 0.018
59 249849_at AT5G23230 NIC2, nicotinamidase 2 0.284 -0.011
60 249866_at AT5G23010 IMS3, 2-ISOPROPYLMALATE SYNTHASE 3, MAM1, methylthioalkylmalate synthase 1 0.281 -0.221
61 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 0.281 -0.096
62 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 0.279 0.005
63 249174_at AT5G42900 COR27, cold regulated gene 27 0.276 0.036
64 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.275 -0.001
65 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.274 0.063
66 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 0.273 0.073
67 249039_at AT5G44310 [Late embryogenesis abundant protein (LEA) family protein] 0.265 0.023
68 259276_at AT3G01190 [Peroxidase superfamily protein] 0.262 0.083
69 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] 0.257 0.101
70 257994_at AT3G19920 unknown 0.252 0.124
71 254013_at AT4G26050 PIRL8, plant intracellular ras group-related LRR 8 0.248 -0.058
72 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.246 0.011
73 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.243 -0.062
74 252537_at AT3G45710 [Major facilitator superfamily protein] 0.241 0.083
75 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.236 0.042
76 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.235 -0.038
77 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.235 0.042
78 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.232 -0.047
79 261224_at AT1G20160 ATSBT5.2 0.228 0.079
80 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.223 0.176
81 265817_at AT2G18050 HIS1-3, histone H1-3 0.223 -0.223
82 254440_at AT4G21020 [Late embryogenesis abundant protein (LEA) family protein] 0.217 0.039
83 262260_at AT1G70850 MLP34, MLP-like protein 34 0.217 0.003
84 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.215 -0.400
85 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.211 0.424
86 262517_at AT1G17180 ATGSTU25, glutathione S-transferase TAU 25, GSTU25, glutathione S-transferase TAU 25 0.207 0.069
87 249013_at AT5G44700 EDA23, EMBRYO SAC DEVELOPMENT ARREST 23, GSO2, GASSHO 2 0.206 -0.035
88 253870_at AT4G27530 unknown 0.205 0.055
89 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.202 0.087
90 262304_at AT1G70890 MLP43, MLP-like protein 43 0.201 -0.038
91 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.671 -0.369
92 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] -0.639 -0.232
93 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.600 -0.216
94 247431_at AT5G62520 SRO5, similar to RCD one 5 -0.600 -0.191
95 259879_at AT1G76650 CML38, calmodulin-like 38 -0.538 -0.285
96 247024_at AT5G66985 unknown -0.519 -0.237
97 245226_at AT3G29970 [B12D protein] -0.513 -0.489
98 261567_at AT1G33055 unknown -0.508 -0.234
99 261684_at AT1G47400 unknown -0.507 -0.113
100 257008_at AT3G14210 ESM1, epithiospecifier modifier 1 -0.492 -0.025
101 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.490 -0.158
102 254200_at AT4G24110 unknown -0.425 -0.296
103 254300_at AT4G22780 ACR7, ACT domain repeat 7 -0.400 -0.042
104 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.382 0.096
105 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 -0.378 -0.394
106 257925_at AT3G23170 unknown -0.374 -0.052
107 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.356 -0.107
108 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -0.352 -0.158
109 255807_at AT4G10270 [Wound-responsive family protein] -0.347 -0.211
110 257654_at AT3G13310 DJC66, DNA J protein C66 -0.329 -0.011
111 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.311 -0.111
112 249384_at AT5G39890 unknown -0.300 -0.068
113 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.298 0.017
114 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.282 0.034
115 250498_at AT5G09660 PMDH2, peroxisomal NAD-malate dehydrogenase 2 -0.281 0.002
116 245173_at AT2G47520 AtERF71, Arabidopsis thaliana ethylene response factor 71, ERF71, ethylene response factor 71, HRE2, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 -0.273 -0.009
117 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -0.271 -0.006
118 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.267 0.034
119 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 -0.267 0.055
120 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 -0.262 -0.028
121 251704_at AT3G56360 unknown -0.259 -0.106
122 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 -0.256 0.006
123 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 -0.249 -0.171
124 258262_at AT3G15770 unknown -0.245 -0.045
125 245296_at AT4G16370 oligopeptide transporter -0.245 0.099
126 244980_at ATCG00760 RPL36, ribosomal protein L36 -0.243 0.018
127 250152_at AT5G15120 unknown -0.239 -0.132
128 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 -0.236 -0.079
129 246149_at AT5G19890 [Peroxidase superfamily protein] -0.235 0.076
130 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.229 -0.005
131 245163_at AT2G33230 YUC7, YUCCA 7 -0.229 -0.006
132 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.229 -0.114
133 256926_at AT3G22540 unknown -0.225 -0.011
134 244965_at ATCG00590 ORF31 -0.218 -0.018
135 261717_at AT1G18400 BEE1, BR enhanced expression 1 -0.216 -0.153
136 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.216 -0.096
137 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.215 0.067
138 264836_at AT1G03610 unknown -0.215 -0.040
139 245005_at ATCG00330 RPS14, chloroplast ribosomal protein S14 -0.214 -0.043
140 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.212 -0.042
141 244977_at ATCG00730 PETD, photosynthetic electron transfer D -0.211 0.055
142 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.211 0.054
143 254828_at AT4G12550 AIR1, Auxin-Induced in Root cultures 1 -0.208 0.063
144 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.205 -0.028
145 262160_at AT1G52590 [Putative thiol-disulphide oxidoreductase DCC] -0.204 0.004
146 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.204 -0.158
147 256599_at AT3G14760 unknown -0.204 -0.050
148 252421_at AT3G47540 [Chitinase family protein] -0.199 0.033
149 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.199 -0.032
150 244938_at ATCG01120 RPS15, chloroplast ribosomal protein S15 -0.198 -0.128
151 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A -0.193 -0.126
152 245000_at ATCG00210 YCF6 -0.193 0.000
153 255088_at AT4G09350 CRRJ, CHLORORESPIRATORY REDUCTION J, DJC75, DNA J protein C75, NdhT, NADH dehydrogenase-like complex T -0.192 -0.140
154 262170_at AT1G74940 unknown -0.192 -0.027
155 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] -0.190 -0.112
156 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 -0.188 -0.043
157 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.188 0.011
158 260427_at AT1G72430 SAUR78, SMALL AUXIN UPREGULATED RNA 78 -0.187 -0.027
159 256262_at AT3G12150 unknown -0.186 -0.004
160 255074_at AT4G09100 [RING/U-box superfamily protein] -0.185 -0.018
161 260727_at AT1G48100 [Pectin lyase-like superfamily protein] -0.184 -0.010
162 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.183 0.096
163 262238_at AT1G48300 DGAT3, diacylglycerol acyltransferase 3 -0.182 -0.027
164 264211_at AT1G22770 FB, GI, GIGANTEA -0.182 -0.004
165 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.182 -0.032
166 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 -0.182 -0.037
167 249234_at AT5G42200 [RING/U-box superfamily protein] -0.179 -0.066
168 250937_at AT5G03230 unknown -0.177 -0.055
169 249053_at AT5G44440 [FAD-binding Berberine family protein] -0.173 -0.038
170 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.172 0.022
171 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] -0.171 -0.220
172 251006_at AT5G02600 NAKR1, SODIUM POTASSIUM ROOT DEFECTIVE 1, NPCC6, nuclear-enriched phloem companion cell gene 6 -0.170 0.120
173 263374_at AT2G20560 [DNAJ heat shock family protein] -0.170 0.007
174 250826_at AT5G05220 unknown -0.169 0.022
175 244974_at ATCG00700 PSBN, photosystem II reaction center protein N -0.168 0.028
176 258608_at AT3G03020 unknown -0.167 0.078
177 249015_at AT5G44730 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.164 -0.126
178 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 -0.163 -0.150
179 262357_at AT1G73040 [Mannose-binding lectin superfamily protein] -0.162 0.056