4.0:Information of module
gun1-1 +lincomycin
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 1.036e-85
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 1.177e-84
GO:0006081 cellular aldehyde metabolic process BP 6.169e-77
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 2.062e-05
GO:0006354 DNA-templated transcription, elongation BP 2.312e-05
GO:0002376 immune system process BP 2.521e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
gun1-1 +lincomycin		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 256603_at AT3G28270 unknown 1.061 -0.938
2 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A 0.992 0.066
3 258055_at AT3G16250 NDF4, NDH-dependent cyclic electron flow 1, PnsB3, Photosynthetic NDH subcomplex B 3 0.709 -1.293
4 261942_at AT1G22590 AGL87, AGAMOUS-like 87 0.701 -0.815
5 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.662 -0.110
6 249191_at AT5G42760 [Leucine carboxyl methyltransferase] 0.617 -1.212
7 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] 0.614 -0.018
8 262612_at AT1G14150 PnsL2, Photosynthetic NDH subcomplex L 2, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 0.610 -1.169
9 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.610 0.015
10 258025_at AT3G19480 3-PGDH, PGDH3, phosphoglycerate dehydrogenase 3 0.591 -0.772
11 264648_at AT1G09080 BIP3, binding protein 3 0.576 -0.005
12 248890_at AT5G46270 [Disease resistance protein (TIR-NBS-LRR class) family] 0.573 -0.246
13 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 0.572 -0.485
14 263597_at AT2G01870 unknown 0.536 -0.499
15 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 0.536 -0.224
16 261782_at AT1G76110 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] 0.532 -0.983
17 246004_at AT5G20630 ATGER3, ARABIDOPSIS THALIANA GERMIN 3, GER3, germin 3, GLP3, GERMIN-LIKE PROTEIN 3, GLP3A, GLP3B 0.501 -0.590
18 251155_at AT3G63160 OEP6, outer envelope protein 6 0.493 -0.594
19 252366_at AT3G48420 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.486 -1.213
20 261430_at AT1G18830 SEC31A 0.474 -0.020
21 259352_at AT3G05170 [Phosphoglycerate mutase family protein] 0.471 0.163
22 263287_at AT2G36145 unknown 0.468 -0.856
23 250255_at AT5G13730 SIG4, sigma factor 4, SIGD 0.467 -0.720
24 256015_at AT1G19150 LHCA2*1, Lhca6, photosystem I light harvesting complex gene 6 0.456 -0.723
25 249120_at AT5G43750 NDH18, NAD(P)H dehydrogenase 18, PnsB5, Photosynthetic NDH subcomplex B 5 0.453 -0.673
26 260388_at AT1G74070 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.439 -0.781
27 264096_at AT1G78995 unknown 0.434 -0.713
28 245876_at AT1G26230 Cpn60beta4, chaperonin-60beta4 0.424 -0.762
29 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.420 0.144
30 252853_at AT4G39710 FKBP16-2, FK506-binding protein 16-2, PnsL4, Photosynthetic NDH subcomplex L 4 0.411 -0.801
31 250506_at AT5G09930 ABCF2, ATP-binding cassette F2 0.410 -0.020
32 266979_at AT2G39470 PnsL1, Photosynthetic NDH subcomplex L 1, PPL2, PsbP-like protein 2 0.403 -1.099
33 258315_at AT3G16175 [Thioesterase superfamily protein] 0.394 -0.286
34 259913_at AT1G72660 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.393 -0.036
35 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] 0.390 -0.902
36 259172_at AT3G03630 CS26, cysteine synthase 26 0.384 -0.446
37 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.378 -0.641
38 264435_at AT1G10360 ATGSTU18, glutathione S-transferase TAU 18, GST29, GLUTATHIONE S-TRANSFERASE 29, GSTU18, glutathione S-transferase TAU 18 0.370 -0.851
39 258920_at AT3G10520 AHB2, haemoglobin 2, ARATH GLB2, ATGLB2, ARABIDOPSIS HEMOGLOBIN 2, GLB2, HEMOGLOBIN 2, HB2, haemoglobin 2, NSHB2, NON-SYMBIOTIC HAEMOGLOBIN 2 0.368 -0.305
40 262313_at AT1G70900 unknown 0.367 -0.135
41 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 0.358 -0.260
42 262288_at AT1G70760 CRR23, CHLORORESPIRATORY REDUCTION 23, NdhL, NADH dehydrogenase-like complex L 0.355 -1.035
43 256792_at AT3G22150 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.347 -0.601
44 254125_at AT4G24670 TAR2, tryptophan aminotransferase related 2 0.346 -0.519
45 258087_at AT3G26060 ATPRX Q, PRXQ, peroxiredoxin Q 0.346 -0.596
46 253884_at AT4G27670 HSP21, heat shock protein 21 0.342 -0.042
47 266291_at AT2G29320 [NAD(P)-binding Rossmann-fold superfamily protein] 0.335 -0.332
48 249510_at AT5G38510 [Rhomboid-related intramembrane serine protease family protein] 0.334 -0.472
49 261801_at AT1G30520 AAE14, acyl-activating enzyme 14 0.334 -0.693
50 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.328 0.319
51 258333_at AT3G16000 MFP1, MAR binding filament-like protein 1 0.327 -0.564
52 249876_at AT5G23060 CaS, calcium sensing receptor 0.316 -0.801
53 261769_at AT1G76100 PETE1, plastocyanin 1 0.316 -0.593
54 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.311 -0.075
55 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] 0.310 -1.039
56 250211_at AT5G13880 unknown 0.305 -0.253
57 260309_at AT1G70580 AOAT2, alanine-2-oxoglutarate aminotransferase 2, GGT2, GLUTAMATE:GLYOXYLATE AMINOTRANSFERASE 2 0.305 -0.350
58 250802_at AT5G04970 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.304 0.078
59 267505_at AT2G45560 CYP76C1, cytochrome P450, family 76, subfamily C, polypeptide 1 0.300 -0.193
60 254398_at AT4G21280 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-1, PHOTOSYSTEM II SUBUNIT Q-1, PSBQA, photosystem II subunit QA 0.295 -0.570
61 267483_at AT2G02810 ATUTR1, UDP-GALACTOSE TRANSPORTER 1, UTR1, UDP-galactose transporter 1 0.293 0.226
62 248094_at AT5G55220 [trigger factor type chaperone family protein] 0.292 -0.736
63 247102_at AT5G66550 [Maf-like protein] 0.291 -0.223
64 247943_at AT5G57170 [Tautomerase/MIF superfamily protein] 0.291 -0.448
65 256979_at AT3G21055 PSBTN, photosystem II subunit T 0.290 -0.512
66 245747_at AT1G51100 CRR41, CHLORORESPIRATORY REDUCTION 41 0.289 -0.438
67 250262_at AT5G13410 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.288 -0.402
68 250739_at AT5G05740 ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 0.287 -0.708
69 259981_at AT1G76450 [Photosystem II reaction center PsbP family protein] 0.286 -0.624
70 254889_at AT4G11650 ATOSM34, osmotin 34, OSM34, osmotin 34 -0.560 0.856
71 260012_at AT1G67865 unknown -0.504 0.206
72 266712_at AT2G46750 AtGulLO2, GulLO2, L -gulono-1,4-lactone ( L -GulL) oxidase 2 -0.502 0.628
73 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] -0.445 0.115
74 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase -0.412 0.078
75 260568_at AT2G43570 CHI, chitinase, putative -0.395 0.470
76 261006_at AT1G26410 [FAD-binding Berberine family protein] -0.363 -0.064
77 251420_at AT3G60490 [Integrase-type DNA-binding superfamily protein] -0.344 0.083
78 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 -0.319 -0.183
79 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 -0.318 -0.123
80 253217_at AT4G34970 ADF9, actin depolymerizing factor 9 -0.301 0.151
81 247197_at AT5G65240 [Leucine-rich repeat protein kinase family protein] -0.301 0.196
82 246933_at AT5G25160 ZFP3, zinc finger protein 3 -0.294 0.164
83 260004_at AT1G67860 unknown -0.286 0.269
84 259036_at AT3G09220 LAC7, laccase 7 -0.277 -0.158
85 245041_at AT2G26530 AR781 -0.272 -0.034
86 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] -0.264 0.888
87 247425_at AT5G62550 unknown -0.264 0.198
88 246759_at AT5G27950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.255 -0.232
89 257670_at AT3G20340 unknown -0.255 0.400
90 244983_at ATCG00790 RPL16, ribosomal protein L16 -0.246 -0.307
91 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.231 -0.194
92 250872_at AT5G03960 IQD12, IQ-domain 12 -0.231 0.115
93 245088_at AT2G39850 [Subtilisin-like serine endopeptidase family protein] -0.228 -0.705
94 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.224 0.487
95 245932_at AT5G09290 [Inositol monophosphatase family protein] -0.222 -0.043
96 244982_at ATCG00780 RPL14, ribosomal protein L14 -0.215 -0.353
97 258787_at AT3G11840 PUB24, plant U-box 24 -0.212 0.138
98 255626_at AT4G00780 [TRAF-like family protein] -0.201 -0.096
99 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 -0.199 0.106
100 254551_at AT4G19840 ATPP2-A1, phloem protein 2-A1, ATPP2A-1, phloem protein 2-A1, PP2-A1, phloem protein 2-A1 -0.187 -0.051
101 262782_at AT1G13195 [RING/U-box superfamily protein] -0.183 0.092
102 265345_at AT2G22680 WAVH1, WAV3 homolog 1 -0.183 0.397
103 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 -0.180 0.197
104 254347_at AT4G22070 ATWRKY31, WRKY31, WRKY DNA-binding protein 31 -0.180 -0.094
105 257113_at AT3G20130 CYP705A22, cytochrome P450, family 705, subfamily A, polypeptide 22, GPS1, gravity persistence signal 1 -0.178 0.116
106 244981_at ATCG00770 RPS8, ribosomal protein S8 -0.175 -0.411
107 262071_at AT1G59510 CF9 -0.172 -0.067
108 245196_at AT1G67750 [Pectate lyase family protein] -0.172 0.507
109 254592_at AT4G18880 AT-HSFA4A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, HSF A4A, heat shock transcription factor A4A -0.171 0.079
110 263427_at AT2G22260 ALKBH2, homolog of E. coli alkB -0.171 -0.179
111 246133_at AT5G20960 AAO1, aldehyde oxidase 1, AO1, aldehyde oxidase 1, AOalpha, aldehyde oxidase alpha, AT-AO1, ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, ATAO, AtAO1, Arabidopsis thaliana aldehyde oxidase 1 -0.170 -0.061
112 247902_at AT5G57350 AHA3, H(+)-ATPase 3, ATAHA3, ARABIDOPSIS THALIANA ARABIDOPSIS H(+)-ATPASE, HA3, H(+)-ATPase 3 -0.169 -0.127
113 259169_at AT3G03520 NPC3, non-specific phospholipase C3 -0.168 -0.006
114 245017_at ATCG00510 PSAI, photsystem I subunit I -0.166 -0.356
115 248469_at AT5G50820 anac097, NAC domain containing protein 97, NAC097, NAC domain containing protein 97 -0.164 -0.101
116 253510_at AT4G31730 GDU1, glutamine dumper 1 -0.163 -0.445
117 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 -0.162 0.636
118 250032_at AT5G18170 GDH1, glutamate dehydrogenase 1 -0.160 -0.008
119 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.160 -0.338
120 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] -0.160 0.322
121 244986_at ATCG00820 RPS19, ribosomal protein S19 -0.159 -0.238
122 244965_at ATCG00590 ORF31 -0.157 -0.309
123 258445_at AT3G22400 ATLOX5, Arabidopsis thaliana lipoxygenase 5, LOX5 -0.157 -0.245
124 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.156 0.214
125 253493_at AT4G31820 ENP, ENHANCER OF PINOID, MAB4, MACCHI-BOU 4, NPY1, NAKED PINS IN YUC MUTANTS 1 -0.155 -0.101
126 258228_at AT3G27610 [Nucleotidylyl transferase superfamily protein] -0.154 0.062
127 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 -0.153 -0.203
128 247324_at AT5G64190 unknown -0.153 0.311
129 257476_at AT1G80960 [F-box and Leucine Rich Repeat domains containing protein] -0.152 -0.014
130 250216_at AT5G14090 AtLAZY1, LAZY1, LAZY 1 -0.152 -0.481
131 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.148 0.098
132 249415_at AT5G39660 CDF2, cycling DOF factor 2 -0.146 -0.350
133 253036_at AT4G38340 NLP3, NIN-like protein 3 -0.141 -0.239
134 266375_at AT2G14630 unknown -0.140 -0.091
135 245049_at ATCG00050 RPS16, ribosomal protein S16 -0.140 -0.740
136 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.136 0.472
137 265440_at AT2G20960 pEARLI4 -0.135 0.032