4.0:Information of module
abi4-102 -lincomycin
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0034754 cellular hormone metabolic process BP 1.422e-09
GO:0009683 indoleacetic acid metabolic process BP 7.536e-09
GO:0009684 indoleacetic acid biosynthetic process BP 7.536e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 4.586e-27
GO:0009657 plastid organization BP 1.027e-25
GO:0006081 cellular aldehyde metabolic process BP 1.195e-24
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
abi4-102 -lincomycin		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.854 -0.031
2 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.790 0.079
3 250979_at AT5G03090 unknown 0.651 0.086
4 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.630 0.075
5 263498_at AT2G42610 LSH10, LIGHT SENSITIVE HYPOCOTYLS 10 0.619 0.056
6 249053_at AT5G44440 [FAD-binding Berberine family protein] 0.602 0.134
7 248949_at AT5G45570 [Ulp1 protease family protein] 0.567 -0.076
8 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.535 0.109
9 251772_at AT3G55920 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.487 -0.041
10 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.476 0.001
11 263089_at AT2G16000 [copia-like retrotransposon family, has a 2.6e-248 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.399 -0.022
12 253155_at AT4G35720 unknown 0.383 0.093
13 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.377 0.072
14 245422_at AT4G17470 [alpha/beta-Hydrolases superfamily protein] 0.351 -0.018
15 265503_at AT2G15510 [non-LTR retrotransposon family (LINE), has a 3.0e-20 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)] 0.350 -0.244
16 257551_at AT3G13270 unknown 0.342 -0.143
17 249114_at AT5G43800 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.332 -0.117
18 258367_at AT3G14370 WAG2 0.331 -0.083
19 263894_at AT2G21910 CYP96A5, cytochrome P450, family 96, subfamily A, polypeptide 5 0.322 0.038
20 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 0.313 0.148
21 245076_at AT2G23170 GH3.3 0.304 0.091
22 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.301 -0.049
23 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 0.297 -0.158
24 245103_at AT2G41590 unknown 0.283 -0.123
25 252612_at AT3G45160 [Putative membrane lipoprotein] 0.282 0.102
26 267389_at AT2G44460 BGLU28, beta glucosidase 28 0.264 -0.045
27 250433_at AT5G10400 H3.1, histone 3.1 0.248 -0.097
28 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.242 0.009
29 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.242 -0.076
30 246888_at AT5G26270 unknown 0.233 0.099
31 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.225 -0.130
32 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.218 -0.069
33 254914_at AT4G11290 [Peroxidase superfamily protein] 0.218 0.037
34 261521_at AT1G71830 ATSERK1, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1, SERK1, somatic embryogenesis receptor-like kinase 1 0.208 -0.175
35 264635_at AT1G65500 unknown 0.200 -0.118
36 246687_at AT5G33370 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.198 -0.045
37 254092_at AT4G25090 [Riboflavin synthase-like superfamily protein] 0.195 0.080
38 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.192 -0.092
39 266392_at AT2G41280 ATM10, M10 0.186 -0.090
40 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.182 0.301
41 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.181 -0.120
42 248812_at AT5G47330 [alpha/beta-Hydrolases superfamily protein] 0.177 0.047
43 247878_at AT5G57760 unknown 0.175 -0.138
44 258323_at AT3G22750 [Protein kinase superfamily protein] 0.174 -0.027
45 250992_at AT5G02260 ATEXP9, ATEXPA9, expansin A9, ATHEXP ALPHA 1.10, EXP9, EXPA9, expansin A9 0.173 0.127
46 246228_at AT4G36430 [Peroxidase superfamily protein] 0.172 0.067
47 261951_at AT1G64490 [DEK, chromatin associated protein] 0.172 -0.071
48 263002_at AT1G54200 unknown 0.171 0.090
49 244986_at ATCG00820 RPS19, ribosomal protein S19 0.168 0.325
50 259774_at AT1G29520 [AWPM-19-like family protein] 0.166 -0.024
51 251886_at AT3G54260 TBL36, TRICHOME BIREFRINGENCE-LIKE 36 0.163 -0.042
52 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 0.159 -0.026
53 265121_at AT1G62560 FMO GS-OX3, flavin-monooxygenase glucosinolate S-oxygenase 3 0.155 -0.090
54 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.153 0.615
55 253070_at AT4G37850 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.152 0.173
56 260074_at AT1G73640 AtRABA6a, RAB GTPase homolog A6A, RABA6a, RAB GTPase homolog A6A 0.152 0.063
57 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.150 0.058
58 247302_at AT5G63880 VPS20.1 0.150 0.002
59 255111_at AT4G08780 [Peroxidase superfamily protein] 0.149 -0.070
60 251244_at AT3G62060 [Pectinacetylesterase family protein] 0.147 -0.184
61 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.146 -0.034
62 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase 0.144 -0.067
63 248914_at AT5G45750 AtRABA1c, RAB GTPase homolog A1C, RABA1c, RAB GTPase homolog A1C 0.141 0.152
64 255460_at AT4G02800 unknown 0.140 -0.145
65 259366_at AT1G13280 AOC4, allene oxide cyclase 4 0.138 -0.113
66 265083_at AT1G03820 unknown 0.134 -0.088
67 258255_at AT3G26800 unknown 0.132 0.144
68 260312_at AT1G63880 [Disease resistance protein (TIR-NBS-LRR class) family] 0.130 -0.163
69 251423_at AT3G60550 CYCP3;2, cyclin p3;2 0.128 -0.045
70 257144_at AT3G27300 G6PD5, glucose-6-phosphate dehydrogenase 5 -0.760 0.024
71 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.534 0.084
72 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.514 -0.146
73 248549_at AT5G50310 [Galactose oxidase/kelch repeat superfamily protein] -0.473 0.044
74 252004_at AT3G52780 ATPAP20, PAP20 -0.446 -0.037
75 254250_at AT4G23290 CRK21, cysteine-rich RLK (RECEPTOR-like protein kinase) 21 -0.325 -0.321
76 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.321 0.852
77 250478_at AT5G10250 DOT3, DEFECTIVELY ORGANIZED TRIBUTARIES 3 -0.309 -0.074
78 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 -0.302 0.043
79 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.279 0.244
80 266118_at AT2G02130 LCR68, low-molecular-weight cysteine-rich 68, PDF2.3 -0.275 0.084
81 261813_at AT1G08280 [Glycosyltransferase family 29 (sialyltransferase) family protein] -0.274 -0.047
82 254543_at AT4G19810 ChiC, class V chitinase -0.253 0.013
83 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.250 -0.053
84 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 -0.245 -0.281
85 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B -0.232 -0.050
86 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 -0.229 0.236
87 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -0.228 -0.038
88 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.217 0.023
89 255294_at AT4G04750 [Major facilitator superfamily protein] -0.214 0.005
90 248854_at AT5G46580 [pentatricopeptide (PPR) repeat-containing protein] -0.211 0.058
91 262801_at AT1G21010 unknown -0.207 0.045
92 266562_at AT2G23970 [Class I glutamine amidotransferase-like superfamily protein] -0.205 0.029
93 245692_at AT5G04150 BHLH101 -0.205 -0.001
94 258034_at AT3G21300 [RNA methyltransferase family protein] -0.202 -0.050
95 249464_at AT5G39710 EMB2745, EMBRYO DEFECTIVE 2745 -0.197 -0.066
96 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.196 -0.285
97 251935_at AT3G54090 FLN1, fructokinase-like 1 -0.195 0.094
98 261819_at AT1G11410 [S-locus lectin protein kinase family protein] -0.189 0.128
99 265122_at AT1G62540 FMO GS-OX2, flavin-monooxygenase glucosinolate S-oxygenase 2 -0.186 -0.137
100 258701_at AT3G09720 AtRH57, RH57, RNA helicase 57 -0.184 0.104
101 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 -0.180 0.004
102 251670_at AT3G57190 PrfB3, peptide chain release factor 3 -0.179 -0.054
103 249874_at AT5G23070 AtTK1b, TK1b, thymidine kinase 1b -0.177 0.084
104 249071_at AT5G44050 [MATE efflux family protein] -0.174 -0.081
105 265596_at AT2G20020 ATCAF1, CAF1 -0.174 0.185
106 267550_at AT2G32800 AP4.3A, LecRK-S.2, L-type lectin receptor kinase S.2 -0.174 0.032
107 259892_at AT1G72610 ATGER1, A. THALIANA GERMIN-LIKE PROTEIN 1, GER1, germin-like protein 1, GLP1, GERMIN-LIKE PROTEIN 1 -0.174 0.065
108 264452_at AT1G10270 GRP23, glutamine-rich protein 23 -0.171 0.015
109 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 -0.170 0.052
110 259172_at AT3G03630 CS26, cysteine synthase 26 -0.167 0.060
111 250696_at AT5G06790 unknown -0.166 -0.034
112 251936_at AT3G53700 MEE40, maternal effect embryo arrest 40 -0.164 0.047
113 266572_at AT2G23840 [HNH endonuclease] -0.162 0.018
114 256518_at AT1G66080 unknown -0.161 -0.062
115 253782_at AT4G28590 AtECB1, ECB1, early chloroplast biogenesis 1, MRL7, Mesophyll-cell RNAi Library line 7, SVR4, SUPPRESSOR OF VARIEGATION 4 -0.160 -0.234
116 258534_at AT3G06730 TRX P, thioredoxin putative plastidic, TRX z, Thioredoxin z -0.158 -0.059
117 250624_at AT5G07330 unknown -0.154 -0.125
118 261296_at AT1G48460 unknown -0.153 0.019
119 258884_at AT3G10050 OMR1, L-O-methylthreonine resistant 1 -0.152 0.069
120 264041_at AT2G03710 AGL3, AGAMOUS-like 3, SEP4, SEPALLATA 4 -0.151 0.048
121 246850_at AT5G26860 LON1, lon protease 1, LON_ARA_ARA -0.149 0.040
122 264294_at AT1G78750 [F-box/RNI-like superfamily protein] -0.148 0.052
123 263826_at AT2G40410 AtCaN2, Ca2+-dependent nuclease, CAN2, calcium dependent nuclease 2 -0.147 -0.129
124 263255_at AT1G10490 unknown -0.144 -0.165
125 247981_at AT5G56640 MIOX5, myo-inositol oxygenase 5 -0.144 -0.164
126 260581_at AT2G47190 ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, myb domain protein 2 -0.143 0.122
127 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 -0.142 -0.005
128 257856_at AT3G12930 [Lojap-related protein] -0.142 -0.096
129 263014_at AT1G23400 ATCAF2, ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, CAF2 -0.140 -0.205
130 249708_at AT5G35660 [Glycine-rich protein family] -0.138 -0.080
131 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN -0.137 0.012
132 248094_at AT5G55220 [trigger factor type chaperone family protein] -0.134 0.185
133 267046_at AT2G34360 [MATE efflux family protein] -0.134 0.092
134 251476_at AT3G59670 unknown -0.133 0.071
135 258106_at AT3G23580 RNR2, RNR2A, ribonucleotide reductase 2A -0.133 0.001
136 264142_at AT1G78930 [Mitochondrial transcription termination factor family protein] -0.132 -0.104
137 266368_at AT2G41380 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.130 0.029