4.0:Information of module
sfr6 control
In comparison with Dark 3day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 1.905e-06
GO:0009853 photorespiration BP 1.997e-06
GO:0043094 cellular metabolic compound salvage BP 3.357e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006888 ER to Golgi vesicle-mediated transport BP 3.275e-04
GO:0042793 transcription from plastid promoter BP 9.552e-04
GO:0009658 chloroplast organization BP 1.140e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sfr6 control		 Log2 signal ratio
Dark 3day ivd
1 254700_at AT4G18000 unknown 0.330 -0.071
2 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.261 -4.548
3 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 0.225 -5.640
4 262293_at AT1G27640 unknown 0.164 1.370
5 251317_at AT3G61490 [Pectin lyase-like superfamily protein] 0.144 -1.397
6 247940_at AT5G57190 PSD2, phosphatidylserine decarboxylase 2 0.143 -0.788
7 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.143 -4.295
8 249392_at AT5G40150 [Peroxidase superfamily protein] 0.141 -3.174
9 260727_at AT1G48100 [Pectin lyase-like superfamily protein] 0.133 -4.912
10 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.132 -1.983
11 249476_at AT5G38910 [RmlC-like cupins superfamily protein] 0.132 -0.071
12 266309_at AT2G27140 [HSP20-like chaperones superfamily protein] 0.128 -1.768
13 258919_at AT3G10525 LGO, LOSS OF GIANT CELLS FROM ORGANS, SMR1, SIAMESE RELATED 1 0.123 -0.314
14 247213_at AT5G64900 ATPEP1, ARABIDOPSIS THALIANA PEPTIDE 1, PEP1, PEPTIDE 1, PROPEP1, precursor of peptide 1 0.122 1.428
15 262201_at AT2G01120 ATORC4, ORIGIN RECOGNITION COMPLEX SUBUNIT 4, ORC4, origin recognition complex subunit 4 0.117 -0.430
16 249607_at AT5G37280 [RING/U-box superfamily protein] 0.114 -0.071
17 245568_at AT4G14650 unknown 0.113 -0.071
18 262753_at AT1G16340 ATKDSA2, ATKSDA 0.113 -2.890
19 256673_at AT3G52370 FLA15, FASCICLIN-like arabinogalactan protein 15 precursor 0.111 -6.439
20 246142_at AT5G19970 unknown 0.102 -2.911
21 251067_at AT5G01910 unknown 0.101 -3.476
22 246346_at AT3G56810 unknown 0.100 -3.243
23 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.099 -6.867
24 251852_at AT3G54750 unknown 0.098 -1.880
25 259398_at AT1G17700 PRA1.F1, prenylated RAB acceptor 1.F1 0.097 -4.531
26 254803_at AT4G13100 [RING/U-box superfamily protein] 0.097 -2.558
27 252163_at AT3G50610 unknown 0.097 -0.071
28 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 0.096 -1.546
29 247873_at AT5G57690 ATDGK4, DGK4, diacylglycerol kinase 4 0.096 -0.071
30 256944_at AT3G18990 REM39, REPRODUCTIVE MERISTEM 39, VRN1, REDUCED VERNALIZATION RESPONSE 1 0.090 0.630
31 251210_at AT3G62810 [complex 1 family protein / LVR family protein] 0.089 -1.472
32 246247_at AT4G36640 [Sec14p-like phosphatidylinositol transfer family protein] 0.089 -0.754
33 250979_at AT5G03090 unknown 0.088 -0.071
34 257201_at AT3G23740 unknown 0.088 -4.313
35 260211_at AT1G74440 unknown 0.088 -2.049
36 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.088 -5.246
37 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] -0.460 3.348
38 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.406 2.759
39 261639_at AT1G50010 TUA2, tubulin alpha-2 chain -0.385 -0.636
40 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 -0.345 -4.057
41 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.303 5.455
42 253332_at AT4G33420 [Peroxidase superfamily protein] -0.274 0.163
43 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 -0.172 2.512
44 264680_at AT1G65510 unknown -0.154 4.522
45 246044_at AT5G19450 CDPK19, calcium-dependent protein kinase 19, CPK8 -0.153 0.924
46 258634_at AT3G08000 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.105 -2.207
47 253732_at AT4G29140 ADS1, ACTIVATED DISEASE SUSCEPTIBILITY 1 -0.105 -3.147
48 257502_at AT1G78110 unknown -0.101 -0.190
49 255484_at AT4G02540 [Cysteine/Histidine-rich C1 domain family protein] -0.097 0.561
50 246383_at AT1G77360 APPR6, Arabidopsis pentatricopeptide repeat 6 -0.096 1.150
51 264815_at AT1G03620 [ELMO/CED-12 family protein] -0.090 4.528
52 256544_at AT1G42560 ATMLO9, ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 9, MLO9, MILDEW RESISTANCE LOCUS O 9 -0.090 1.016
53 246209_at AT4G36870 BLH2, BEL1-like homeodomain 2, SAW1, SAWTOOTH 1 -0.087 0.875
54 245000_at ATCG00210 YCF6 -0.087 1.913
55 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A -0.086 0.318
56 259232_at AT3G11420 unknown -0.083 1.106
57 260809_at AT1G43730 [RNA-directed DNA polymerase (reverse transcriptase)-related family protein] -0.081 -0.071
58 246407_at AT1G57670 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.081 0.496
59 256725_at AT2G34070 TBL37, TRICHOME BIREFRINGENCE-LIKE 37 -0.081 -2.448
60 252100_at AT3G51110 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.077 2.229
61 247790_at AT5G58720 [smr (Small MutS Related) domain-containing protein] -0.077 2.154
62 262525_at AT1G17060 CHI2, CHIBI 2, CYP72C1, cytochrome p450 72c1, SHK1, SHRINK 1, SOB7, SUPPRESSOR OF PHYB-4 7 -0.077 0.491
63 250852_at AT5G04670 [Enhancer of polycomb-like transcription factor protein] -0.074 0.708
64 258253_at AT3G26760 [NAD(P)-binding Rossmann-fold superfamily protein] -0.074 0.017
65 257246_at AT3G24130 [Pectin lyase-like superfamily protein] -0.074 -0.071
66 266732_at AT2G03240 [EXS (ERD1/XPR1/SYG1) family protein] -0.074 -0.267
67 262673_at AT1G76060 EMB1793, EMBRYO DEFECTIVE 1793 -0.072 0.388
68 246278_at AT4G37190 [LOCATED IN: cytosol, plasma membrane] -0.071 -0.492
69 260563_at AT2G43840 UGT74F1, UDP-glycosyltransferase 74 F1 -0.071 -2.164
70 263403_at AT2G04040 ATDTX1, DTX1, detoxification 1, TX1 -0.069 2.285
71 247841_at AT5G58040 ATFIP1[V], homolog of yeast FIP1 [V], ATFIPS5, FIP1[V], homolog of yeast FIP1 [V], FIPS5 -0.069 1.875