4.0:Information of module
Col-0 48 hpi
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 5.020e-59
GO:0045087 innate immune response BP 1.279e-57
GO:0006955 immune response BP 3.124e-57
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 2.056e-17
GO:0006790 sulfur compound metabolic process BP 2.710e-15
GO:0044283 small molecule biosynthetic process BP 2.964e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 48 hpi		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.487 0.760
2 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.139 0.868
3 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 1.094 0.622
4 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.055 0.919
5 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 1.031 0.578
6 267345_at AT2G44240 unknown 0.991 -0.041
7 248333_at AT5G52390 [PAR1 protein] 0.991 1.081
8 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.943 0.028
9 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.890 0.525
10 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.869 -0.038
11 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.857 0.077
12 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.848 0.371
13 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.833 0.215
14 249481_at AT5G38900 [Thioredoxin superfamily protein] 0.823 0.319
15 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.820 -0.078
16 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.819 0.311
17 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.816 -0.120
18 258362_at AT3G14280 unknown 0.816 0.410
19 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.810 0.208
20 260568_at AT2G43570 CHI, chitinase, putative 0.798 0.470
21 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.795 0.328
22 249850_at AT5G23240 DJC76, DNA J protein C76 0.787 0.218
23 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.786 0.294
24 256569_at AT3G19550 unknown 0.782 0.321
25 258209_at AT3G14060 unknown 0.781 0.749
26 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.779 -0.058
27 256937_at AT3G22620 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.775 0.166
28 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] 0.762 0.791
29 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.749 0.670
30 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.747 0.811
31 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 0.732 0.217
32 250798_at AT5G05340 PRX52, peroxidase 52 0.729 0.770
33 258203_at AT3G13950 unknown 0.727 -0.096
34 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.726 0.810
35 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.722 0.019
36 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.717 0.722
37 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.710 0.545
38 256969_at AT3G21080 [ABC transporter-related] 0.704 0.424
39 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] 0.693 0.232
40 260804_at AT1G78410 [VQ motif-containing protein] 0.687 0.087
41 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.683 0.483
42 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.677 -0.007
43 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 0.671 0.431
44 265471_at AT2G37130 [Peroxidase superfamily protein] 0.660 0.126
45 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.657 1.106
46 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.653 -0.549
47 257154_at AT3G27210 unknown 0.652 0.386
48 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.643 0.125
49 257061_at AT3G18250 [Putative membrane lipoprotein] 0.642 0.371
50 245148_at AT2G45220 PME17, pectin methylesterase 17 0.641 0.091
51 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.637 0.728
52 265853_at AT2G42360 [RING/U-box superfamily protein] 0.636 0.269
53 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 0.628 -0.024
54 247882_at AT5G57785 unknown 0.620 -0.047
55 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.617 0.861
56 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] 0.614 0.182
57 249454_at AT5G39520 unknown 0.613 1.071
58 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.611 0.333
59 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.605 0.325
60 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 0.601 0.015
61 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.597 0.808
62 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 0.588 0.423
63 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.581 0.609
64 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.578 0.322
65 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.578 0.216
66 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.573 0.122
67 263772_at AT2G06255 ELF4-L3, ELF4-like 3 0.571 -0.041
68 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.570 0.713
69 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.568 0.098
70 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.567 0.757
71 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.566 0.670
72 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.561 0.364
73 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 0.561 0.078
74 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.560 0.099
75 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.560 -0.696
76 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.557 0.176
77 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.549 0.457
78 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.544 0.093
79 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 0.542 -0.004
80 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.541 0.050
81 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.541 0.387
82 264005_at AT2G22470 AGP2, arabinogalactan protein 2, ATAGP2 0.540 0.561
83 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.535 0.112
84 251789_at AT3G55450 PBL1, PBS1-like 1 0.535 0.083
85 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.535 0.080
86 261216_at AT1G33030 [O-methyltransferase family protein] 0.524 0.613
87 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.519 0.322
88 257697_at AT3G12700 NANA, NANA 0.517 0.492
89 249174_at AT5G42900 COR27, cold regulated gene 27 0.516 0.164
90 255595_at AT4G01700 [Chitinase family protein] 0.510 0.443
91 254543_at AT4G19810 ChiC, class V chitinase 0.509 0.355
92 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.508 0.771
93 262212_at AT1G74890 ARR15, response regulator 15 -0.719 -0.377
94 249469_at AT5G39320 UDG4, UDP-glucose dehydrogenase 4 -0.650 0.122
95 260773_at AT1G78440 ATGA2OX1, Arabidopsis thaliana gibberellin 2-oxidase 1, GA2OX1, gibberellin 2-oxidase 1 -0.626 0.033
96 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 -0.579 -0.718
97 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -0.533 -0.287
98 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.523 -0.185
99 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.510 0.084
100 267411_at AT2G34930 [disease resistance family protein / LRR family protein] -0.505 0.433
101 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.492 -0.819
102 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.490 -0.717
103 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.486 0.375
104 253254_at AT4G34650 SQS2, squalene synthase 2 -0.478 -0.598
105 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.458 -0.077
106 267359_at AT2G40020 [Nucleolar histone methyltransferase-related protein] -0.448 -0.519
107 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.442 -0.498
108 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.439 -0.518
109 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.430 -0.775
110 249011_at AT5G44670 GALS2, galactan synthase 2 -0.421 -0.030
111 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.415 -0.885
112 247878_at AT5G57760 unknown -0.410 0.231
113 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 -0.404 -0.135
114 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.388 -0.118
115 248656_at AT5G48460 [Actin binding Calponin homology (CH) domain-containing protein] -0.382 -0.053
116 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.378 0.109
117 255818_at AT2G33570 GALS1, galactan synthase 1 -0.377 -0.180
118 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.373 -0.252
119 250379_at AT5G11590 TINY2, TINY2 -0.362 -0.329
120 247474_at AT5G62280 unknown -0.360 0.088
121 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 -0.357 -0.786
122 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] -0.355 -0.122
123 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.354 0.425
124 249645_at AT5G36910 THI2.2, thionin 2.2 -0.353 -0.850
125 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.350 0.191
126 256275_at AT3G12110 ACT11, actin-11 -0.341 -0.123
127 261712_at AT1G32780 [GroES-like zinc-binding dehydrogenase family protein] -0.336 -0.240
128 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 -0.333 -0.628
129 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] -0.332 -0.054
130 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.330 0.050
131 251059_at AT5G01810 ATPK10, PROTEIN KINASE 10, CIPK15, CBL-interacting protein kinase 15, PKS3, SIP2, SOS3-INTERACTING PROTEIN 2, SNRK3.1, SNF1-RELATED PROTEIN KINASE 3.1 -0.329 -0.209
132 249588_at AT5G37790 [Protein kinase superfamily protein] -0.321 0.062
133 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 -0.319 -0.534
134 246885_at AT5G26230 MAKR1, membrane-associated kinase regulator 1 -0.318 -0.043
135 245190_at AT1G67690 [Zincin-like metalloproteases family protein] -0.309 -0.089
136 253533_at AT4G31590 ATCSLC05, CELLULOSE-SYNTHASE LIKE C5, ATCSLC5, Cellulose-synthase-like C5, CSLC05, CELLULOSE-SYNTHASE LIKE C5, CSLC5, Cellulose-synthase-like C5 -0.302 -0.033
137 252612_at AT3G45160 [Putative membrane lipoprotein] -0.302 -0.837
138 251575_at AT3G58120 ATBZIP61, BZIP61 -0.301 -0.371
139 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.297 -0.356
140 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.297 -0.612
141 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.293 -0.160
142 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.292 -0.126
143 249541_at AT5G38130 [HXXXD-type acyl-transferase family protein] -0.291 0.013
144 257959_at AT3G25560 AtNIK2, NIK2, NSP-interacting kinase 2 -0.288 -0.238
145 245657_at AT1G56720 [Protein kinase superfamily protein] -0.286 -0.204
146 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.286 -0.483
147 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.285 -0.270
148 266295_at AT2G29550 TUB7, tubulin beta-7 chain -0.285 0.075
149 261605_at AT1G49580 [Calcium-dependent protein kinase (CDPK) family protein] -0.283 -0.052
150 256125_at AT1G18250 ATLP-1 -0.279 0.181
151 259042_at AT3G03450 RGL2, RGA-like 2 -0.278 -0.282
152 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.278 -0.353
153 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.278 -0.115
154 245676_at AT1G56670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.275 -0.139
155 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] -0.272 0.016
156 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.271 0.032
157 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.271 -0.032
158 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.269 -0.402
159 248597_at AT5G49160 DDM2, DECREASED DNA METHYLATION 2, DMT01, DNA METHYLTRANSFERASE 01, DMT1, DNA METHYLTRANSFERASE 1, MET1, methyltransferase 1, MET2, METHYLTRANSFERASE 2, METI, METHYLTRANSFERASE I -0.268 -0.109
160 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 -0.268 -0.611
161 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.267 0.410
162 245616_at AT4G14480 [Protein kinase superfamily protein] -0.266 -0.220
163 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.264 -0.141
164 246231_at AT4G37080 unknown -0.257 -0.554
165 251714_at AT3G56370 [Leucine-rich repeat protein kinase family protein] -0.256 -0.059
166 257650_at AT3G16800 [Protein phosphatase 2C family protein] -0.255 -0.313
167 245171_at AT2G47560 [RING/U-box superfamily protein] -0.252 0.102
168 252954_at AT4G38660 [Pathogenesis-related thaumatin superfamily protein] -0.252 -0.062
169 249059_at AT5G44530 [Subtilase family protein] -0.250 -0.663
170 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.249 -0.143
171 266921_at AT2G45970 CYP86A8, cytochrome P450, family 86, subfamily A, polypeptide 8, LCR, LACERATA -0.248 -0.155
172 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.246 -0.096
173 258884_at AT3G10050 OMR1, L-O-methylthreonine resistant 1 -0.245 -0.058
174 262026_at AT1G35670 ATCDPK2, calcium-dependent protein kinase 2, ATCPK11, CDPK2, calcium-dependent protein kinase 2, CPK11 -0.244 -0.085
175 248801_at AT5G47370 HAT2 -0.242 0.146
176 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.240 0.018
177 253165_at AT4G35320 unknown -0.239 -0.076
178 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 -0.237 0.015
179 256671_at AT3G52290 IQD3, IQ-domain 3 -0.235 -0.165
180 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.234 -0.115
181 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.232 -0.112
182 254382_at AT4G21890 unknown -0.231 -0.147
183 248759_at AT5G47610 [RING/U-box superfamily protein] -0.231 -0.362