4.0:Information of module
Col-0 48 hpi
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 5.020e-59
GO:0045087 innate immune response BP 1.279e-57
GO:0006955 immune response BP 3.124e-57
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 2.056e-17
GO:0006790 sulfur compound metabolic process BP 2.710e-15
GO:0044283 small molecule biosynthetic process BP 2.964e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col-0 48 hpi		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 1.487 0.079
2 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.139 0.109
3 260101_at AT1G73260 ATKTI1, ARABIDOPSIS THALIANA KUNITZ TRYPSIN INHIBITOR 1, KTI1, kunitz trypsin inhibitor 1 1.094 -0.011
4 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 1.055 -0.096
5 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 1.031 -0.038
6 267345_at AT2G44240 unknown 0.991 0.073
7 248333_at AT5G52390 [PAR1 protein] 0.991 0.041
8 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.943 0.093
9 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.890 -0.346
10 266292_at AT2G29350 SAG13, senescence-associated gene 13 0.869 0.047
11 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.857 -0.016
12 258252_at AT3G15720 [Pectin lyase-like superfamily protein] 0.848 0.066
13 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.833 0.098
14 249481_at AT5G38900 [Thioredoxin superfamily protein] 0.823 0.015
15 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.820 0.011
16 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.819 -0.007
17 257592_at AT3G24982 ATRLP40, receptor like protein 40, RLP40, receptor like protein 40 0.816 0.053
18 258362_at AT3G14280 unknown 0.816 -0.106
19 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.810 -0.073
20 260568_at AT2G43570 CHI, chitinase, putative 0.798 0.036
21 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.795 0.072
22 249850_at AT5G23240 DJC76, DNA J protein C76 0.787 0.076
23 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.786 0.108
24 256569_at AT3G19550 unknown 0.782 -0.125
25 258209_at AT3G14060 unknown 0.781 0.071
26 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.779 -0.237
27 256937_at AT3G22620 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.775 -0.288
28 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] 0.762 -0.039
29 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.749 0.021
30 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.747 0.054
31 256933_at AT3G22600 LTPG5, glycosylphosphatidylinositol-anchored lipid protein transfer 5 0.732 -0.005
32 250798_at AT5G05340 PRX52, peroxidase 52 0.729 0.029
33 258203_at AT3G13950 unknown 0.727 0.033
34 250662_at AT5G07010 ATST2A, ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, ST2A, sulfotransferase 2A 0.726 0.111
35 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.722 -0.004
36 248932_at AT5G46050 AtNPF5.2, ATPTR3, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, NPF5.2, NRT1/ PTR family 5.2, PTR3, peptide transporter 3 0.717 -0.082
37 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.710 -0.164
38 256969_at AT3G21080 [ABC transporter-related] 0.704 0.183
39 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] 0.693 0.120
40 260804_at AT1G78410 [VQ motif-containing protein] 0.687 -0.152
41 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.683 0.238
42 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.677 -0.095
43 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 0.671 -0.218
44 265471_at AT2G37130 [Peroxidase superfamily protein] 0.660 0.127
45 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.657 -0.012
46 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 0.653 -0.033
47 257154_at AT3G27210 unknown 0.652 0.134
48 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.643 -0.147
49 257061_at AT3G18250 [Putative membrane lipoprotein] 0.642 0.051
50 245148_at AT2G45220 PME17, pectin methylesterase 17 0.641 0.032
51 247717_at AT5G59320 LTP3, lipid transfer protein 3 0.637 -0.055
52 265853_at AT2G42360 [RING/U-box superfamily protein] 0.636 0.139
53 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 0.628 0.246
54 247882_at AT5G57785 unknown 0.620 0.103
55 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.617 0.074
56 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] 0.614 0.104
57 249454_at AT5G39520 unknown 0.613 0.035
58 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.611 -0.149
59 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.605 0.035
60 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 0.601 0.236
61 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.597 0.043
62 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 0.588 -0.175
63 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.581 -0.075
64 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.578 -0.234
65 264616_at AT2G17740 [Cysteine/Histidine-rich C1 domain family protein] 0.578 -0.191
66 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.573 -0.075
67 263772_at AT2G06255 ELF4-L3, ELF4-like 3 0.571 -0.063
68 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.570 -0.043
69 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.568 0.023
70 245038_at AT2G26560 PLA IIA, PHOSPHOLIPASE A 2A, PLA2A, phospholipase A 2A, PLAII alpha, PLP2, PATATIN-LIKE PROTEIN 2, PLP2, PHOSPHOLIPASE A 2A 0.567 0.008
71 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.566 0.235
72 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.561 -0.034
73 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 0.561 -0.299
74 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.560 -0.018
75 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 0.560 -0.254
76 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.557 -0.346
77 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.549 0.058
78 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.544 -0.097
79 247266_at AT5G64570 ATBXL4, ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, XYL4, beta-D-xylosidase 4 0.542 -0.141
80 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.541 0.001
81 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.541 0.014
82 264005_at AT2G22470 AGP2, arabinogalactan protein 2, ATAGP2 0.540 0.180
83 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] 0.535 0.080
84 251789_at AT3G55450 PBL1, PBS1-like 1 0.535 0.048
85 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.535 -0.049
86 261216_at AT1G33030 [O-methyltransferase family protein] 0.524 0.171
87 245317_at AT4G15610 [Uncharacterised protein family (UPF0497)] 0.519 0.016
88 257697_at AT3G12700 NANA, NANA 0.517 -0.058
89 249174_at AT5G42900 COR27, cold regulated gene 27 0.516 -0.049
90 255595_at AT4G01700 [Chitinase family protein] 0.510 -0.051
91 254543_at AT4G19810 ChiC, class V chitinase 0.509 0.013
92 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.508 0.028
93 262212_at AT1G74890 ARR15, response regulator 15 -0.719 0.122
94 249469_at AT5G39320 UDG4, UDP-glucose dehydrogenase 4 -0.650 0.065
95 260773_at AT1G78440 ATGA2OX1, Arabidopsis thaliana gibberellin 2-oxidase 1, GA2OX1, gibberellin 2-oxidase 1 -0.626 0.076
96 259432_at AT1G01520 ASG4, ALTERED SEED GERMINATION 4 -0.579 -0.378
97 261150_at AT1G19640 JMT, jasmonic acid carboxyl methyltransferase -0.533 0.041
98 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.523 -0.219
99 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.510 0.148
100 267411_at AT2G34930 [disease resistance family protein / LRR family protein] -0.505 0.093
101 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.492 0.090
102 265665_at AT2G27420 [Cysteine proteinases superfamily protein] -0.490 -0.157
103 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.486 0.029
104 253254_at AT4G34650 SQS2, squalene synthase 2 -0.478 0.028
105 245816_at AT1G26210 ATSOFL1, SOB FIVE-LIKE 1, SOFL1, SOB five-like 1 -0.458 -0.266
106 267359_at AT2G40020 [Nucleolar histone methyltransferase-related protein] -0.448 -0.119
107 256980_at AT3G26932 DRB3, dsRNA-binding protein 3 -0.442 -0.023
108 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 -0.439 -0.055
109 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.430 -0.062
110 249011_at AT5G44670 GALS2, galactan synthase 2 -0.421 -0.019
111 248839_at AT5G46690 bHLH071, beta HLH protein 71 -0.415 -0.034
112 247878_at AT5G57760 unknown -0.410 -0.138
113 267123_at AT2G23560 ATMES7, ARABIDOPSIS THALIANA METHYL ESTERASE 7, MES7, methyl esterase 7 -0.404 -0.054
114 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein -0.388 0.070
115 248656_at AT5G48460 [Actin binding Calponin homology (CH) domain-containing protein] -0.382 -0.091
116 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.378 -0.073
117 255818_at AT2G33570 GALS1, galactan synthase 1 -0.377 -0.039
118 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.373 0.097
119 250379_at AT5G11590 TINY2, TINY2 -0.362 0.065
120 247474_at AT5G62280 unknown -0.360 0.102
121 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 -0.357 -0.158
122 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] -0.355 -0.209
123 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.354 0.510
124 249645_at AT5G36910 THI2.2, thionin 2.2 -0.353 -0.112
125 264025_at AT2G21050 LAX2, like AUXIN RESISTANT 2 -0.350 -0.023
126 256275_at AT3G12110 ACT11, actin-11 -0.341 -0.191
127 261712_at AT1G32780 [GroES-like zinc-binding dehydrogenase family protein] -0.336 0.081
128 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 -0.333 -0.194
129 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] -0.332 -0.108
130 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 -0.330 -0.160
131 251059_at AT5G01810 ATPK10, PROTEIN KINASE 10, CIPK15, CBL-interacting protein kinase 15, PKS3, SIP2, SOS3-INTERACTING PROTEIN 2, SNRK3.1, SNF1-RELATED PROTEIN KINASE 3.1 -0.329 -0.020
132 249588_at AT5G37790 [Protein kinase superfamily protein] -0.321 -0.102
133 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 -0.319 0.231
134 246885_at AT5G26230 MAKR1, membrane-associated kinase regulator 1 -0.318 -0.098
135 245190_at AT1G67690 [Zincin-like metalloproteases family protein] -0.309 0.152
136 253533_at AT4G31590 ATCSLC05, CELLULOSE-SYNTHASE LIKE C5, ATCSLC5, Cellulose-synthase-like C5, CSLC05, CELLULOSE-SYNTHASE LIKE C5, CSLC5, Cellulose-synthase-like C5 -0.302 -0.031
137 252612_at AT3G45160 [Putative membrane lipoprotein] -0.302 0.102
138 251575_at AT3G58120 ATBZIP61, BZIP61 -0.301 -0.106
139 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.297 0.236
140 261569_at AT1G01060 LHY, LATE ELONGATED HYPOCOTYL, LHY1, LATE ELONGATED HYPOCOTYL 1 -0.297 -0.072
141 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.293 -0.222
142 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.292 -0.149
143 249541_at AT5G38130 [HXXXD-type acyl-transferase family protein] -0.291 0.008
144 257959_at AT3G25560 AtNIK2, NIK2, NSP-interacting kinase 2 -0.288 0.022
145 245657_at AT1G56720 [Protein kinase superfamily protein] -0.286 0.008
146 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 -0.286 -0.144
147 267595_at AT2G32990 AtGH9B8, glycosyl hydrolase 9B8, GH9B8, glycosyl hydrolase 9B8 -0.285 -0.055
148 266295_at AT2G29550 TUB7, tubulin beta-7 chain -0.285 0.053
149 261605_at AT1G49580 [Calcium-dependent protein kinase (CDPK) family protein] -0.283 0.243
150 256125_at AT1G18250 ATLP-1 -0.279 -0.178
151 259042_at AT3G03450 RGL2, RGA-like 2 -0.278 -0.025
152 255549_at AT4G01950 ATGPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3, GPAT3, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 3 -0.278 -0.120
153 250751_at AT5G05890 [UDP-Glycosyltransferase superfamily protein] -0.278 -0.216
154 245676_at AT1G56670 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.275 0.126
155 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] -0.272 -0.012
156 259417_at AT1G02340 FBI1, HFR1, LONG HYPOCOTYL IN FAR-RED, REP1, REDUCED PHYTOCHROME SIGNALING 1, RSF1, REDUCED SENSITIVITY TO FAR-RED LIGHT 1 -0.271 -0.141
157 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.271 -0.355
158 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 -0.269 -0.077
159 248597_at AT5G49160 DDM2, DECREASED DNA METHYLATION 2, DMT01, DNA METHYLTRANSFERASE 01, DMT1, DNA METHYLTRANSFERASE 1, MET1, methyltransferase 1, MET2, METHYLTRANSFERASE 2, METI, METHYLTRANSFERASE I -0.268 0.229
160 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 -0.268 0.186
161 261766_at AT1G15580 ATAUX2-27, AUX2-27, AUXIN-INDUCIBLE 2-27, IAA5, indole-3-acetic acid inducible 5 -0.267 -0.032
162 245616_at AT4G14480 [Protein kinase superfamily protein] -0.266 0.029
163 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.264 0.055
164 246231_at AT4G37080 unknown -0.257 0.054
165 251714_at AT3G56370 [Leucine-rich repeat protein kinase family protein] -0.256 0.020
166 257650_at AT3G16800 [Protein phosphatase 2C family protein] -0.255 0.083
167 245171_at AT2G47560 [RING/U-box superfamily protein] -0.252 -0.069
168 252954_at AT4G38660 [Pathogenesis-related thaumatin superfamily protein] -0.252 0.135
169 249059_at AT5G44530 [Subtilase family protein] -0.250 -0.041
170 266439_s_at AT2G43200 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.249 0.169
171 266921_at AT2G45970 CYP86A8, cytochrome P450, family 86, subfamily A, polypeptide 8, LCR, LACERATA -0.248 0.044
172 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.246 0.183
173 258884_at AT3G10050 OMR1, L-O-methylthreonine resistant 1 -0.245 0.069
174 262026_at AT1G35670 ATCDPK2, calcium-dependent protein kinase 2, ATCPK11, CDPK2, calcium-dependent protein kinase 2, CPK11 -0.244 0.029
175 248801_at AT5G47370 HAT2 -0.242 0.010
176 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.240 -0.078
177 253165_at AT4G35320 unknown -0.239 -0.167
178 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 -0.237 0.143
179 256671_at AT3G52290 IQD3, IQ-domain 3 -0.235 0.050
180 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.234 -0.027
181 263656_at AT1G04240 IAA3, indole-3-acetic acid inducible 3, SHY2, SHORT HYPOCOTYL 2 -0.232 0.056
182 254382_at AT4G21890 unknown -0.231 -0.004
183 248759_at AT5G47610 [RING/U-box superfamily protein] -0.231 0.046