4.0:Information of module
tetraploid
In comparison with AtHDA6(rts1-1) rts1-5 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.638e-18
GO:0009719 response to endogenous stimulus BP 3.214e-18
GO:0010033 response to organic substance BP 1.219e-14
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0080167 response to karrikin BP 2.649e-08
GO:0009411 response to UV BP 9.579e-07
GO:0071555 cell wall organization BP 2.535e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
tetraploid		 Log2 signal ratio
AtHDA6(rts1-1) rts1-5
1 262211_at AT1G74930 ORA47 0.882 -0.109
2 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.694 0.058
3 267357_at AT2G40000 ATHSPRO2, ARABIDOPSIS ORTHOLOG OF SUGAR BEET HS1 PRO-1 2, HSPRO2, ortholog of sugar beet HS1 PRO-1 2 0.598 0.019
4 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.596 -0.441
5 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 0.580 -0.461
6 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 0.560 0.156
7 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.553 -0.280
8 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.460 -0.163
9 253643_at AT4G29780 unknown 0.457 0.052
10 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.457 -0.404
11 245041_at AT2G26530 AR781 0.421 0.017
12 265184_at AT1G23710 unknown 0.387 -0.087
13 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 0.378 0.031
14 255568_at AT4G01250 AtWRKY22, WRKY22 0.372 0.057
15 260770_at AT1G49200 [RING/U-box superfamily protein] 0.359 0.140
16 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.352 0.002
17 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.350 0.140
18 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.346 -0.024
19 265387_at AT2G20670 unknown 0.345 0.002
20 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.338 0.047
21 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.324 -0.010
22 251039_at AT5G02020 SIS, Salt Induced Serine rich 0.309 -0.085
23 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.298 -0.274
24 255926_at AT1G22190 RAP2.4, related to AP2 4 0.288 0.046
25 258792_at AT3G04640 [glycine-rich protein] 0.287 -0.035
26 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 0.276 -0.216
27 258901_at AT3G05640 [Protein phosphatase 2C family protein] 0.266 -0.404
28 263265_at AT2G38820 unknown 0.252 -0.135
29 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.249 -0.283
30 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.248 0.037
31 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 0.247 -0.466
32 259979_at AT1G76600 unknown 0.247 0.048
33 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] 0.245 0.098
34 247585_at AT5G60680 unknown 0.240 -0.091
35 266259_at AT2G27830 unknown 0.237 -0.027
36 247708_at AT5G59550 unknown 0.236 0.041
37 264379_at AT2G25200 unknown 0.235 -0.001
38 264210_at AT1G22640 ATMYB3, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, MYB3, myb domain protein 3 0.233 -0.149
39 259015_at AT3G07350 unknown 0.230 -0.114
40 252250_at AT3G49790 [Carbohydrate-binding protein] 0.223 0.024
41 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] 0.220 0.002
42 259231_at AT3G11410 AHG3, ATPP2CA, ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, PP2CA, protein phosphatase 2CA 0.219 -0.058
43 260037_at AT1G68840 AtRAV2, EDF2, ETHYLENE RESPONSE DNA BINDING FACTOR 2, RAP2.8, RELATED TO AP2 8, RAV2, related to ABI3/VP1 2, TEM2, TEMPRANILLO 2 0.218 0.003
44 253322_at AT4G33980 unknown 0.217 -0.033
45 246289_at AT3G56880 [VQ motif-containing protein] 0.217 -0.016
46 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.215 0.062
47 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 0.214 -0.008
48 261265_at AT1G26800 [RING/U-box superfamily protein] 0.211 -0.065
49 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 0.206 -0.062
50 254574_at AT4G19430 unknown -0.666 0.083
51 251677_at AT3G56980 BHLH039, bHLH39, basic helix-loop-helix 39, ORG3, OBP3-RESPONSIVE GENE 3 -0.583 0.354
52 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -0.403 -0.022
53 251248_at AT3G62150 ABCB21, ATP-binding cassette B21, PGP21, P-glycoprotein 21 -0.361 0.154
54 264751_at AT1G23020 ATFRO3, FERRIC REDUCTION OXIDASE 3, FRO3, ferric reduction oxidase 3 -0.296 0.183
55 257421_at AT1G12030 unknown -0.264 0.476
56 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] -0.252 0.302
57 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 -0.241 0.012
58 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.234 0.181
59 256379_at AT1G66840 PMI2, plastid movement impaired 2, WEB2, WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 2 -0.207 0.071
60 259325_at AT3G05320 [O-fucosyltransferase family protein] -0.207 0.237
61 252661_at AT3G44450 unknown -0.205 -0.158
62 245296_at AT4G16370 oligopeptide transporter -0.200 0.106
63 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 -0.194 0.089
64 258677_at AT3G08730 ATPK1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ATPK6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATS6K1, PK1, protein-serine kinase 1, PK6, ROTEIN-SERINE KINASE 6, S6K1, P70 RIBOSOMAL S6 KINASE -0.192 0.052
65 260427_at AT1G72430 SAUR78, SMALL AUXIN UPREGULATED RNA 78 -0.191 0.218
66 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 -0.191 0.136
67 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.183 0.021
68 254016_at AT4G26150 CGA1, cytokinin-responsive gata factor 1, GATA22, GATA TRANSCRIPTION FACTOR 22, GNL, GNC-LIKE -0.176 0.204
69 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 -0.175 0.180
70 263808_at AT2G04340 unknown -0.173 0.052
71 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.169 0.224
72 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 -0.169 0.178
73 257076_at AT3G19680 unknown -0.155 0.199
74 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 -0.151 0.091
75 245306_at AT4G14690 ELIP2, EARLY LIGHT-INDUCIBLE PROTEIN 2 -0.150 0.054
76 248028_at AT5G55620 unknown -0.150 0.017
77 252316_at AT3G48700 ATCXE13, carboxyesterase 13, CXE13, carboxyesterase 13 -0.147 -0.113
78 255064_at AT4G08950 EXO, EXORDIUM -0.146 0.180
79 257181_at AT3G13190 unknown -0.145 -0.033
80 245692_at AT5G04150 BHLH101 -0.138 0.125
81 262328_at AT1G64100 [pentatricopeptide (PPR) repeat-containing protein] -0.136 -0.004
82 260951_at AT1G06150 EMB1444, EMBRYO DEFECTIVE 1444 -0.136 0.017
83 259968_at AT1G76530 [Auxin efflux carrier family protein] -0.135 -0.046
84 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 -0.135 0.237
85 266711_at AT2G46740 AtGulLO5, GulLO5, L -gulono-1,4-lactone ( L -GulL) oxidase 5 -0.135 -0.064
86 253940_at AT4G26950 unknown -0.134 -0.017
87 266532_at AT2G16890 [UDP-Glycosyltransferase superfamily protein] -0.131 -0.062
88 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 -0.130 0.198
89 248270_at AT5G53450 ORG1, OBP3-responsive gene 1 -0.128 0.065
90 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] -0.126 -0.008
91 263873_at AT2G21860 [violaxanthin de-epoxidase-related] -0.126 0.029
92 262446_at AT1G49310 unknown -0.125 -0.041
93 258009_at AT3G19440 [Pseudouridine synthase family protein] -0.123 0.007
94 248049_at AT5G56090 COX15, cytochrome c oxidase 15 -0.123 0.053
95 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 -0.122 0.032
96 256923_at AT3G29635 [HXXXD-type acyl-transferase family protein] -0.121 0.024
97 252320_at AT3G48580 XTH11, xyloglucan endotransglucosylase/hydrolase 11 -0.120 -0.089