4.0:Information of module
gid1a gid1b-1 gid1c-2 1 hr 100 uM GA3
In comparison with GA4 3 h (ga1 seed) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009739 response to gibberellin BP 7.353e-10
GO:0033993 response to lipid BP 1.727e-09
GO:0009725 response to hormone BP 7.412e-08
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009725 response to hormone BP 2.210e-12
GO:0009719 response to endogenous stimulus BP 3.101e-12
GO:0050794 regulation of cellular process BP 5.094e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
gid1a gid1b-1 gid1c-2 1 hr 100 uM GA3		 Log2 signal ratio
GA4 3 h (ga1 seed)
1 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.849 1.055
2 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 0.734 0.354
3 265891_at AT2G15010 [Plant thionin] 0.712 1.712
4 266912_at AT2G45900 TRM13, TON1 Recruiting Motif 13 0.661 0.238
5 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.638 1.560
6 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 0.618 1.453
7 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.611 0.655
8 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 0.541 1.189
9 257947_at AT3G21720 ICL, isocitrate lyase 0.533 0.265
10 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 0.528 0.905
11 253103_at AT4G36110 SAUR9, SMALL AUXIN UPREGULATED RNA 9 0.521 -0.241
12 247061_at AT5G66780 unknown 0.509 1.649
13 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 0.494 0.463
14 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 0.489 1.925
15 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.456 1.554
16 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 0.448 0.928
17 260883_at AT1G29270 unknown 0.437 -0.156
18 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 0.429 0.186
19 245341_at AT4G16447 unknown 0.423 -0.021
20 255900_at AT1G17830 unknown 0.402 0.019
21 252924_at AT4G39070 BBX20, B-box domain protein 20, BZS1, BZS1 0.388 0.205
22 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 0.387 -0.032
23 246929_at AT5G25210 unknown 0.385 0.719
24 258809_at AT3G04070 anac047, NAC domain containing protein 47, NAC047, NAC domain containing protein 47 0.376 -0.519
25 264931_at AT1G60590 [Pectin lyase-like superfamily protein] 0.371 -0.245
26 263829_at AT2G40435 unknown 0.357 0.868
27 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 0.352 0.430
28 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.344 0.565
29 263325_at AT2G04240 XERICO 0.339 0.319
30 266124_at AT2G45080 cycp3;1, cyclin p3;1 0.324 0.007
31 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.310 1.050
32 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 0.295 1.140
33 250868_at AT5G03860 MLS, malate synthase 0.290 0.528
34 265249_at AT2G01940 ATIDD15, ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 15, SGR5, SHOOT GRAVITROPISM 5 0.287 0.319
35 254293_at AT4G23060 IQD22, IQ-domain 22 0.285 0.266
36 252482_at AT3G46670 UGT76E11, UDP-glucosyl transferase 76E11 0.282 0.523
37 247212_at AT5G65040 unknown 0.276 -0.257
38 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 0.272 0.274
39 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.266 0.060
40 253774_at AT4G28530 anac074, NAC domain containing protein 74, NAC074, NAC domain containing protein 74 0.262 -0.165
41 248759_at AT5G47610 [RING/U-box superfamily protein] 0.261 -0.433
42 265345_at AT2G22680 WAVH1, WAV3 homolog 1 0.256 0.861
43 255461_at AT4G02780 ABC33, ATCPS1, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, CPS, CPP synthase, CPS1, ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, GA1, GA REQUIRING 1 -0.634 0.168
44 259302_at AT3G05120 ATGID1A, GA INSENSITIVE DWARF1A, GID1A, GA INSENSITIVE DWARF1A -0.467 0.267
45 258091_at AT3G14560 unknown -0.372 -0.847
46 247474_at AT5G62280 unknown -0.326 -0.797
47 251575_at AT3G58120 ATBZIP61, BZIP61 -0.320 -1.074
48 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.288 -0.430
49 265342_at AT2G18300 HBI1, HOMOLOG OF BEE2 INTERACTING WITH IBH 1 -0.280 -0.896
50 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 -0.273 -0.486
51 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.259 -0.406
52 247177_at AT5G65300 unknown -0.255 0.425
53 254572_at AT4G19380 [Long-chain fatty alcohol dehydrogenase family protein] -0.245 -0.369
54 252537_at AT3G45710 [Major facilitator superfamily protein] -0.237 -0.970
55 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.231 -0.207
56 267515_at AT2G45680 TCP9, TCP domain protein 9 -0.226 -0.436
57 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.223 0.196
58 250327_at AT5G12050 unknown -0.219 -0.820
59 256720_at AT2G34140 [Dof-type zinc finger DNA-binding family protein] -0.219 -0.237
60 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.217 -0.508
61 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.215 -0.072
62 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.210 -1.256
63 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 -0.208 -0.190
64 259985_at AT1G76620 unknown -0.203 0.001
65 249211_at AT5G42680 unknown -0.197 -0.438
66 249383_at AT5G39860 BHLH136, BASIC HELIX-LOOP-HELIX PROTEIN 136, BNQ1, BANQUO 1, PRE1, PACLOBUTRAZOL RESISTANCE1 -0.194 -0.006
67 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.194 -0.927
68 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] -0.194 -0.603
69 249309_at AT5G41410 BEL1, BELL 1 -0.191 -0.439
70 248736_at AT5G48110 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.189 -0.196
71 250891_at AT5G04530 KCS19, 3-ketoacyl-CoA synthase 19 -0.188 -0.967
72 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 -0.188 -0.227
73 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.182 -0.035
74 252129_at AT3G50890 AtHB28, homeobox protein 28, HB28, homeobox protein 28, ZHD7, ZINC FINGER HOMEODOMAIN 7 -0.176 0.050
75 260081_at AT1G78170 unknown -0.173 0.000
76 250569_at AT5G08130 BIM1 -0.173 0.174
77 260226_at AT1G74660 MIF1, mini zinc finger 1 -0.172 -0.419
78 267158_at AT2G37640 ATEXP3, EXPANSIN 3, ATEXPA3, ARABIDOPSIS THALIANA EXPANSIN A3, ATHEXP ALPHA 1.9, EXP3 -0.171 0.008
79 245276_at AT4G16780 ATHB-2, homeobox protein 2, ATHB2, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, HAT4, HB-2, homeobox protein 2 -0.168 0.095
80 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 -0.168 -1.255
81 251601_at AT3G57800 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.167 -0.181
82 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 -0.159 -1.457
83 267535_at AT2G41940 ZFP8, zinc finger protein 8 -0.158 -0.516