4.0:Information of module
3.5h KNO3 Whole root
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007049 cell cycle BP 1.088e-06
GO:0044267 cellular protein metabolic process BP 3.302e-05
GO:0022402 cell cycle process BP 8.275e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006661 phosphatidylinositol biosynthetic proces... BP 3.889e-13
GO:0046488 phosphatidylinositol metabolic process BP 4.158e-13
GO:0046474 glycerophospholipid biosynthetic process BP 9.471e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
3.5h KNO3 Whole root		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.305 -0.177
2 262864_at AT1G64920 [UDP-Glycosyltransferase superfamily protein] 0.288 -0.134
3 256018_at AT1G58300 HO4, heme oxygenase 4 0.282 -0.942
4 261558_at AT1G01770 unknown 0.174 0.788
5 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] 0.174 -1.114
6 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 0.163 0.709
7 262454_at AT1G11190 BFN1, bifunctional nuclease i, ENDO1, ENDONUCLEASE 1 0.160 -0.137
8 250571_at AT5G08200 [peptidoglycan-binding LysM domain-containing protein] 0.154 -0.449
9 263127_at AT1G78610 MSL6, mechanosensitive channel of small conductance-like 6 0.149 -0.031
10 262628_at AT1G06490 ATGSL07, Arabidopsis thaliana glucan synthase-like 7, atgsl7, CalS7, callose synthase 7, gsl07, GSL07, glucan synthase-like 7, GSL7, glucan synthase-like 7 0.146 -0.776
11 245109_at AT2G41520 DJC62, DNA J protein C62, TPR15, tetratricopeptide repeat 15 0.141 0.592
12 245174_at AT2G47500 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] 0.135 -0.120
13 257237_at AT3G14890 [phosphoesterase] 0.132 0.435
14 267163_at AT2G37520 [Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain] 0.129 -0.385
15 253432_at AT4G32450 MEF8S, MEF8 similar 0.127 -0.526
16 262859_at AT1G64790 ILA, ILITYHIA 0.127 0.085
17 257593_at AT3G24840 [Sec14p-like phosphatidylinositol transfer family protein] 0.127 -0.178
18 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.126 0.193
19 247147_at AT5G65630 GTE7, global transcription factor group E7 0.126 0.501
20 250691_at AT5G06580 [FAD-linked oxidases family protein] 0.125 -0.319
21 250739_at AT5G05740 ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 0.121 0.692
22 245089_at AT2G45290 TKL2, transketolase 2 0.118 0.254
23 254299_at AT4G22920 ATNYE1, NON-YELLOWING 1, NYE1, NON-YELLOWING 1, SGR, STAY-GREEN 0.118 -0.130
24 256480_at AT1G33410 ATNUP160, ARABIDOPSIS NUCLEOPORIN 160, NUP160, NUCLEOPORIN 160, SAR1, SUPPRESSOR OF AUXIN RESISTANCE1 0.116 0.699
25 248740_at AT5G48130 [Phototropic-responsive NPH3 family protein] 0.116 -0.498
26 248749_at AT5G47880 ERF1-1, eukaryotic release factor 1-1 0.116 0.468
27 265155_at AT1G30990 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.111 -0.050
28 263163_at AT1G03160 FZL, FZO-like 0.109 -0.130
29 266092_at AT2G37880 unknown 0.109 0.284
30 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.108 -0.087
31 249965_at AT5G19020 MEF18, mitochondrial editing factor 18 0.107 -0.296
32 245657_at AT1G56720 [Protein kinase superfamily protein] 0.107 -0.714
33 252468_at AT3G46970 ATPHS2, Arabidopsis thaliana alpha-glucan phosphorylase 2, PHS2, alpha-glucan phosphorylase 2 0.106 0.582
34 251419_at AT3G60470 unknown 0.105 -0.768
35 254155_at AT4G24480 [Protein kinase superfamily protein] 0.104 -0.372
36 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] -0.354 -0.219
37 265817_at AT2G18050 HIS1-3, histone H1-3 -0.273 0.012
38 255248_at AT4G05180 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-2, photosystem II subunit Q-2, PSII-Q -0.266 0.585
39 252661_at AT3G44450 unknown -0.246 1.058
40 261572_at AT1G01170 unknown -0.240 1.478
41 262634_at AT1G06690 [NAD(P)-linked oxidoreductase superfamily protein] -0.232 0.441
42 247339_at AT5G63690 [Nucleic acid-binding, OB-fold-like protein] -0.220 -0.036
43 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.218 0.065
44 251194_at AT3G62920 unknown -0.217 -0.111
45 250233_at AT5G13460 IQD11, IQ-domain 11 -0.210 0.451
46 251031_at AT5G02120 OHP, one helix protein, PDE335, PIGMENT DEFECTIVE 335 -0.209 0.700
47 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 -0.207 0.813
48 251676_at AT3G57320 unknown -0.202 0.403
49 247072_at AT5G66490 unknown -0.199 -0.560
50 264134_at AT1G79070 [SNARE-associated protein-related] -0.189 -0.395
51 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.187 0.012
52 247409_at AT5G62980 FOLB2 -0.186 0.075
53 245064_at AT2G39725 [LYR family of Fe/S cluster biogenesis protein] -0.182 -0.009
54 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 -0.182 1.365
55 245370_at AT4G16840 unknown -0.180 0.300
56 249966_at AT5G19030 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.175 0.725
57 245747_at AT1G51100 CRR41, CHLORORESPIRATORY REDUCTION 41 -0.173 -0.092
58 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 -0.170 -0.015
59 254362_at AT4G22160 unknown -0.169 0.111
60 255865_at AT2G30330 BLOS1, BLOC subunit 1 -0.169 -0.135
61 246001_at AT5G20790 unknown -0.169 1.230
62 246913_at AT5G25830 GATA12, GATA transcription factor 12 -0.167 0.907
63 264636_at AT1G65490 unknown -0.166 -0.749
64 258333_at AT3G16000 MFP1, MAR binding filament-like protein 1 -0.162 0.350
65 263124_at AT1G78480 [Prenyltransferase family protein] -0.161 -0.060
66 263661_at AT1G04290 [Thioesterase superfamily protein] -0.160 0.799
67 253726_at AT4G29430 rps15ae, ribosomal protein S15A E -0.160 -0.230
68 259171_at AT3G03590 [SWIB/MDM2 domain superfamily protein] -0.156 -0.636
69 262719_at AT1G43590 unknown -0.156 -0.308