4.0:Information of module
2hr continuous KNO3 and MSX and Gln PeR cell
In comparison with shoot hypoxia p35S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.412e-08
GO:0042254 ribosome biogenesis BP 3.483e-07
GO:0022613 ribonucleoprotein complex biogenesis BP 4.904e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 7.039e-18
GO:0044765 single-organism transport BP 2.445e-15
GO:0044763 single-organism cellular process BP 3.256e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell		 Log2 signal ratio
shoot hypoxia p35S
1 245505_at AT4G15690 [Thioredoxin superfamily protein] 1.161 0.510
2 245506_at AT4G15700 [Thioredoxin superfamily protein] 1.024 0.268
3 245504_at AT4G15660 [Thioredoxin superfamily protein] 1.003 0.228
4 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.987 0.432
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.933 0.501
6 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.918 0.413
7 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.853 0.128
8 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.824 0.099
9 265387_at AT2G20670 unknown 0.778 0.062
10 246215_at AT4G37180 [Homeodomain-like superfamily protein] 0.709 -0.022
11 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.707 -0.111
12 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.689 0.009
13 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.680 0.339
14 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.647 0.011
15 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.625 0.020
16 260668_at AT1G19530 unknown 0.618 0.178
17 251935_at AT3G54090 FLN1, fructokinase-like 1 0.587 0.022
18 250223_at AT5G14070 ROXY2 0.583 0.153
19 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.575 -0.019
20 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.572 0.220
21 245353_at AT4G16000 unknown 0.571 0.172
22 246142_at AT5G19970 unknown 0.566 0.016
23 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.565 0.088
24 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.556 0.047
25 262399_at AT1G49500 unknown 0.555 0.118
26 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.550 0.014
27 250472_at AT5G10210 unknown 0.544 0.082
28 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 0.535 -0.081
29 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.523 0.354
30 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.503 0.021
31 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.500 0.054
32 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 0.486 0.079
33 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.482 0.061
34 261572_at AT1G01170 unknown 0.481 0.101
35 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.474 -0.028
36 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.465 -0.016
37 258079_at AT3G25940 [TFIIB zinc-binding protein] 0.464 0.209
38 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.464 0.108
39 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.463 0.088
40 255436_at AT4G03150 unknown 0.443 0.142
41 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 0.436 -0.133
42 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 -0.040
43 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] 0.434 0.065
44 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.433 0.143
45 259766_at AT1G64360 unknown 0.430 0.184
46 247754_at AT5G59080 unknown 0.429 0.184
47 248139_at AT5G54970 unknown 0.422 0.311
48 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 0.421 0.016
49 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.412 -0.025
50 249076_at AT5G43970 ATTOM22-V, TOM22-V, translocase of outer membrane 22-V, TOM9-2, TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V 0.407 0.146
51 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.406 -0.149
52 258225_at AT3G15630 unknown 0.397 0.254
53 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] 0.388 0.034
54 266486_at AT2G47950 unknown 0.387 0.129
55 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 0.382 0.217
56 260096_at AT1G73240 unknown 0.381 -0.160
57 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.379 0.104
58 254263_at AT4G23493 unknown 0.375 0.152
59 254011_at AT4G26370 [antitermination NusB domain-containing protein] 0.373 -0.032
60 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.372 0.046
61 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C 0.370 -0.029
62 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.365 0.134
63 254831_at AT4G12600 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.365 -0.039
64 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.360 0.106
65 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.353 0.294
66 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.351 0.236
67 260051_at AT1G78210 [alpha/beta-Hydrolases superfamily protein] 0.350 0.046
68 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.348 -0.012
69 262415_at AT1G49400 emb1129, embryo defective 1129 0.347 0.179
70 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 0.346 -0.052
71 246505_at AT5G16250 unknown 0.346 -0.033
72 265154_at AT1G30960 [GTP-binding family protein] 0.342 -0.033
73 246965_at AT5G24840 [tRNA (guanine-N-7) methyltransferase] 0.341 0.098
74 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.338 0.023
75 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 0.335 -0.013
76 251834_at AT3G55170 [Ribosomal L29 family protein ] 0.331 -0.032
77 259982_at AT1G76410 ATL8 0.331 0.167
78 262931_at AT1G65700 AtLSM8, LSM8, SM-like 8 0.330 0.169
79 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.328 0.239
80 256225_at AT1G56220 [Dormancy/auxin associated family protein] 0.328 0.210
81 262010_at AT1G35612 [expressed protein] 0.324 -0.088
82 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] 0.321 0.049
83 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.319 0.037
84 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.317 0.036
85 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.317 -0.113
86 267562_at AT2G39670 [Radical SAM superfamily protein] 0.316 -0.078
87 254840_at AT4G11930 unknown 0.311 0.006
88 250828_at AT5G05250 unknown 0.308 -0.023
89 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.307 0.009
90 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.306 0.136
91 255501_at AT4G02400 [U3 ribonucleoprotein (Utp) family protein] 0.305 0.037
92 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.301 0.009
93 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 0.299 -0.067
94 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A 0.296 -0.073
95 262584_at AT1G15440 ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2, PWP2, periodic tryptophan protein 2 0.293 -0.053
96 262819_at AT1G11600 CYP77B1, cytochrome P450, family 77, subfamily B, polypeptide 1 0.288 -0.275
97 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.286 -0.023
98 250434_at AT5G10390 H3.1, histone 3.1 0.286 0.226
99 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.285 0.026
100 256950_at AT3G19080 [SWIB complex BAF60b domain-containing protein] 0.284 0.010
101 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 0.279 0.006
102 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.976 -0.104
103 250157_at AT5G15180 [Peroxidase superfamily protein] -0.932 -0.067
104 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] -0.910 0.084
105 257330_at ATMG01290 ORF111C -0.860 -0.172
106 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.860 -0.210
107 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.852 -0.026
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.838 -0.262
109 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.822 0.026
110 248182_at AT5G54030 [Cysteine/Histidine-rich C1 domain family protein] -0.821 0.033
111 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 -0.815 0.003
112 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.741 -0.036
113 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.731 -0.121
114 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.730 0.031
115 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.730 -0.019
116 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.722 0.028
117 253741_at AT4G28890 [RING/U-box superfamily protein] -0.705 0.024
118 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] -0.703 0.037
119 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.698 0.151
120 265710_at AT2G03370 [Glycosyltransferase family 61 protein] -0.697 0.014
121 254193_at AT4G23870 unknown -0.697 0.015
122 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.686 -0.022
123 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.684 -0.156
124 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.680 0.028
125 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.676 0.005
126 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 -0.670 -0.085
127 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.668 -0.026
128 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.662 0.018
129 263658_at AT1G04490 unknown -0.653 -0.074
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.649 -0.000
131 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.648 -0.027
132 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.645 0.031
133 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 -0.629 0.056
134 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.624 0.058
135 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.603 -0.021
136 259701_at AT1G77770 [FUNCTIONS IN: zinc ion binding] -0.590 0.127
137 252218_at AT3G50150 unknown -0.589 0.007
138 264621_at AT2G17700 STY8, serine/threonine/tyrosine kinase 8 -0.586 0.034
139 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.577 0.013
140 257951_at AT3G21700 ATSGP2, SGP2 -0.572 -0.138
141 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.572 -0.059
142 250213_at AT5G13820 ATBP-1, ATBP1, ATTBP1, HPPBF-1, H-PROTEIN PROMOTE, TBP1, telomeric DNA binding protein 1 -0.571 -0.119
143 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.569 -0.053
144 245412_at AT4G17280 [Auxin-responsive family protein] -0.568 0.010
145 264590_at AT2G17710 unknown -0.563 0.147
146 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.559 -0.024
147 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.555 0.086
148 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.552 0.034
149 263989_at AT2G42880 ATMPK20, MAP kinase 20, MPK20, MAP kinase 20 -0.548 -0.103
150 264989_at AT1G27200 unknown -0.542 -0.079
151 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.541 0.043
152 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] -0.540 0.011
153 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.539 -0.012
154 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.528 0.106
155 258367_at AT3G14370 WAG2 -0.527 0.034
156 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.523 0.155
157 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.519 -0.057
158 256997_at AT3G14067 [Subtilase family protein] -0.518 -0.036
159 251594_at AT3G57630 [exostosin family protein] -0.513 -0.016
160 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 -0.511 0.109
161 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.509 0.005
162 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.509 -0.005
163 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.508 0.328
164 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.506 -0.008
165 250156_at AT5G15170 TDP1, tyrosyl-DNA phosphodiesterase 1 -0.505 -0.036
166 253150_at AT4G35660 unknown -0.503 0.084
167 259027_at AT3G09280 unknown -0.502 0.066
168 265688_at AT2G24300 [Calmodulin-binding protein] -0.501 0.078
169 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.501 0.002
170 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] -0.500 0.064
171 259198_at AT3G03610 [ELMO/CED-12 family protein] -0.496 -0.025
172 263830_at AT2G40260 [Homeodomain-like superfamily protein] -0.495 -0.017
173 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.493 -0.022
174 249435_at AT5G39970 [catalytics] -0.492 0.009
175 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.487 0.100
176 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.477 0.094
177 261117_at AT1G75310 AUL1, auxilin-like 1 -0.476 -0.037
178 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.475 0.011
179 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.474 0.199
180 254260_at AT4G23440 [Disease resistance protein (TIR-NBS class)] -0.473 -0.090
181 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.472 -0.208
182 247248_at AT5G64560 ATMGT9, MGT9, magnesium transporter 9, MRS2-2 -0.471 0.089
183 267319_at AT2G34660 ABCC2, ATP-binding cassette C2, AtABCC2, Arabidopsis thaliana ATP-binding cassette C2, ATMRP2, multidrug resistance-associated protein 2, EST4, MRP2, multidrug resistance-associated protein 2 -0.470 -0.199
184 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.470 0.087
185 259596_at AT1G28130 GH3.17 -0.468 -0.077
186 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.468 -0.045
187 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.468 -0.202
188 255642_at AT4G00820 iqd17, IQ-domain 17 -0.467 0.072
189 257761_at AT3G23090 WDL3 -0.462 0.178
190 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.461 -0.088
191 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.459 0.173
192 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.457 0.021
193 253708_at AT4G29210 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 -0.450 -0.053
194 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.449 0.065
195 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.449 0.003
196 254194_at AT4G23980 ARF9, auxin response factor 9 -0.449 -0.200
197 262626_at AT1G06430 FTSH8, FTSH protease 8 -0.447 -0.062
198 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.441 0.058
199 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.440 0.006
200 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.440 0.102
201 253622_at AT4G30560 ATCNGC9, cyclic nucleotide gated channel 9, CNGC9, cyclic nucleotide gated channel 9 -0.440 -0.019