4.0:Information of module
2hr continuous KNO3 and MSX and Gln PeR cell
In comparison with root control p35S help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.412e-08
GO:0042254 ribosome biogenesis BP 3.483e-07
GO:0022613 ribonucleoprotein complex biogenesis BP 4.904e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 7.039e-18
GO:0044765 single-organism transport BP 2.445e-15
GO:0044763 single-organism cellular process BP 3.256e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell		 Log2 signal ratio
root control p35S
1 245505_at AT4G15690 [Thioredoxin superfamily protein] 1.161 0.250
2 245506_at AT4G15700 [Thioredoxin superfamily protein] 1.024 0.018
3 245504_at AT4G15660 [Thioredoxin superfamily protein] 1.003 0.056
4 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.987 0.149
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.933 0.111
6 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.918 0.380
7 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.853 0.308
8 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.824 0.076
9 265387_at AT2G20670 unknown 0.778 -0.107
10 246215_at AT4G37180 [Homeodomain-like superfamily protein] 0.709 0.166
11 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.707 -0.145
12 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.689 0.099
13 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.680 -0.008
14 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.647 0.123
15 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.625 0.063
16 260668_at AT1G19530 unknown 0.618 0.565
17 251935_at AT3G54090 FLN1, fructokinase-like 1 0.587 0.035
18 250223_at AT5G14070 ROXY2 0.583 0.364
19 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.575 0.079
20 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.572 0.268
21 245353_at AT4G16000 unknown 0.571 0.157
22 246142_at AT5G19970 unknown 0.566 -0.068
23 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.565 0.289
24 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.556 0.068
25 262399_at AT1G49500 unknown 0.555 -0.017
26 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.550 0.031
27 250472_at AT5G10210 unknown 0.544 0.192
28 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 0.535 -0.021
29 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.523 0.244
30 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.503 -0.092
31 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.500 -0.057
32 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 0.486 0.196
33 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.482 0.233
34 261572_at AT1G01170 unknown 0.481 0.240
35 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.474 -0.082
36 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.465 0.160
37 258079_at AT3G25940 [TFIIB zinc-binding protein] 0.464 0.093
38 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.464 0.128
39 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.463 -0.047
40 255436_at AT4G03150 unknown 0.443 0.229
41 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 0.436 -0.118
42 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 0.273
43 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] 0.434 0.019
44 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.433 0.199
45 259766_at AT1G64360 unknown 0.430 -0.033
46 247754_at AT5G59080 unknown 0.429 0.298
47 248139_at AT5G54970 unknown 0.422 0.158
48 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 0.421 -0.021
49 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.412 -0.089
50 249076_at AT5G43970 ATTOM22-V, TOM22-V, translocase of outer membrane 22-V, TOM9-2, TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V 0.407 0.028
51 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.406 0.122
52 258225_at AT3G15630 unknown 0.397 0.133
53 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] 0.388 0.042
54 266486_at AT2G47950 unknown 0.387 0.064
55 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 0.382 -0.032
56 260096_at AT1G73240 unknown 0.381 -0.107
57 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.379 0.091
58 254263_at AT4G23493 unknown 0.375 0.391
59 254011_at AT4G26370 [antitermination NusB domain-containing protein] 0.373 0.310
60 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.372 0.269
61 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C 0.370 0.001
62 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.365 0.046
63 254831_at AT4G12600 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.365 -0.033
64 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.360 -0.038
65 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.353 0.121
66 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.351 0.121
67 260051_at AT1G78210 [alpha/beta-Hydrolases superfamily protein] 0.350 0.132
68 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.348 -0.072
69 262415_at AT1G49400 emb1129, embryo defective 1129 0.347 0.068
70 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 0.346 0.014
71 246505_at AT5G16250 unknown 0.346 0.129
72 265154_at AT1G30960 [GTP-binding family protein] 0.342 0.010
73 246965_at AT5G24840 [tRNA (guanine-N-7) methyltransferase] 0.341 0.030
74 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.338 -0.130
75 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 0.335 0.125
76 251834_at AT3G55170 [Ribosomal L29 family protein ] 0.331 -0.027
77 259982_at AT1G76410 ATL8 0.331 0.221
78 262931_at AT1G65700 AtLSM8, LSM8, SM-like 8 0.330 0.101
79 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.328 0.093
80 256225_at AT1G56220 [Dormancy/auxin associated family protein] 0.328 0.138
81 262010_at AT1G35612 [expressed protein] 0.324 -0.112
82 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] 0.321 -0.004
83 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.319 0.180
84 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.317 0.020
85 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.317 0.000
86 267562_at AT2G39670 [Radical SAM superfamily protein] 0.316 0.164
87 254840_at AT4G11930 unknown 0.311 0.005
88 250828_at AT5G05250 unknown 0.308 0.041
89 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.307 -0.054
90 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.306 0.136
91 255501_at AT4G02400 [U3 ribonucleoprotein (Utp) family protein] 0.305 -0.017
92 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.301 -0.132
93 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 0.299 0.140
94 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A 0.296 -0.061
95 262584_at AT1G15440 ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2, PWP2, periodic tryptophan protein 2 0.293 -0.084
96 262819_at AT1G11600 CYP77B1, cytochrome P450, family 77, subfamily B, polypeptide 1 0.288 -0.164
97 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.286 0.092
98 250434_at AT5G10390 H3.1, histone 3.1 0.286 0.099
99 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.285 0.171
100 256950_at AT3G19080 [SWIB complex BAF60b domain-containing protein] 0.284 -0.043
101 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 0.279 -0.002
102 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.976 -0.385
103 250157_at AT5G15180 [Peroxidase superfamily protein] -0.932 -0.345
104 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] -0.910 -0.168
105 257330_at ATMG01290 ORF111C -0.860 -0.142
106 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.860 0.014
107 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.852 -0.178
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.838 -0.109
109 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.822 0.030
110 248182_at AT5G54030 [Cysteine/Histidine-rich C1 domain family protein] -0.821 -0.146
111 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 -0.815 0.079
112 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.741 -0.037
113 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.731 -0.459
114 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.730 -0.238
115 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.730 -0.377
116 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.722 -0.182
117 253741_at AT4G28890 [RING/U-box superfamily protein] -0.705 -0.092
118 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] -0.703 0.019
119 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.698 -0.179
120 265710_at AT2G03370 [Glycosyltransferase family 61 protein] -0.697 -0.137
121 254193_at AT4G23870 unknown -0.697 -0.111
122 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.686 -0.249
123 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.684 -0.460
124 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.680 -0.128
125 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.676 -0.207
126 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 -0.670 0.023
127 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.668 -0.006
128 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.662 -0.096
129 263658_at AT1G04490 unknown -0.653 0.013
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.649 -0.263
131 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.648 -0.117
132 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.645 0.002
133 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 -0.629 -0.321
134 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.624 -0.179
135 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.603 -0.134
136 259701_at AT1G77770 [FUNCTIONS IN: zinc ion binding] -0.590 0.007
137 252218_at AT3G50150 unknown -0.589 -0.176
138 264621_at AT2G17700 STY8, serine/threonine/tyrosine kinase 8 -0.586 0.024
139 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.577 0.074
140 257951_at AT3G21700 ATSGP2, SGP2 -0.572 -0.122
141 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.572 -0.371
142 250213_at AT5G13820 ATBP-1, ATBP1, ATTBP1, HPPBF-1, H-PROTEIN PROMOTE, TBP1, telomeric DNA binding protein 1 -0.571 -0.039
143 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.569 0.009
144 245412_at AT4G17280 [Auxin-responsive family protein] -0.568 -0.137
145 264590_at AT2G17710 unknown -0.563 0.011
146 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.559 -0.176
147 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.555 -0.053
148 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.552 -0.011
149 263989_at AT2G42880 ATMPK20, MAP kinase 20, MPK20, MAP kinase 20 -0.548 0.014
150 264989_at AT1G27200 unknown -0.542 -0.115
151 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.541 0.016
152 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] -0.540 -0.176
153 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.539 -0.154
154 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.528 -0.053
155 258367_at AT3G14370 WAG2 -0.527 -0.210
156 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.523 -0.134
157 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.519 -0.214
158 256997_at AT3G14067 [Subtilase family protein] -0.518 -0.141
159 251594_at AT3G57630 [exostosin family protein] -0.513 -0.199
160 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 -0.511 -0.151
161 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.509 -0.132
162 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.509 -0.213
163 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.508 0.152
164 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.506 -0.191
165 250156_at AT5G15170 TDP1, tyrosyl-DNA phosphodiesterase 1 -0.505 -0.072
166 253150_at AT4G35660 unknown -0.503 0.015
167 259027_at AT3G09280 unknown -0.502 -0.044
168 265688_at AT2G24300 [Calmodulin-binding protein] -0.501 -0.244
169 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.501 -0.070
170 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] -0.500 -0.218
171 259198_at AT3G03610 [ELMO/CED-12 family protein] -0.496 0.018
172 263830_at AT2G40260 [Homeodomain-like superfamily protein] -0.495 -0.190
173 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.493 -0.458
174 249435_at AT5G39970 [catalytics] -0.492 -0.192
175 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.487 -0.241
176 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.477 -0.077
177 261117_at AT1G75310 AUL1, auxilin-like 1 -0.476 0.028
178 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.475 -0.191
179 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.474 0.080
180 254260_at AT4G23440 [Disease resistance protein (TIR-NBS class)] -0.473 -0.030
181 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.472 -0.182
182 247248_at AT5G64560 ATMGT9, MGT9, magnesium transporter 9, MRS2-2 -0.471 0.124
183 267319_at AT2G34660 ABCC2, ATP-binding cassette C2, AtABCC2, Arabidopsis thaliana ATP-binding cassette C2, ATMRP2, multidrug resistance-associated protein 2, EST4, MRP2, multidrug resistance-associated protein 2 -0.470 -0.165
184 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.470 0.058
185 259596_at AT1G28130 GH3.17 -0.468 -0.115
186 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.468 -0.219
187 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.468 -0.056
188 255642_at AT4G00820 iqd17, IQ-domain 17 -0.467 -0.106
189 257761_at AT3G23090 WDL3 -0.462 0.139
190 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.461 -0.344
191 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.459 0.002
192 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.457 -0.057
193 253708_at AT4G29210 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 -0.450 -0.067
194 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.449 0.047
195 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.449 -0.159
196 254194_at AT4G23980 ARF9, auxin response factor 9 -0.449 0.060
197 262626_at AT1G06430 FTSH8, FTSH protease 8 -0.447 -0.208
198 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.441 -0.221
199 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.440 -0.547
200 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.440 -0.104
201 253622_at AT4G30560 ATCNGC9, cyclic nucleotide gated channel 9, CNGC9, cyclic nucleotide gated channel 9 -0.440 -0.311