4.0:Information of module
2hr continuous KNO3 and MSX and Gln PeR cell
In comparison with Laer pretreat GA Flg22 1h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.412e-08
GO:0042254 ribosome biogenesis BP 3.483e-07
GO:0022613 ribonucleoprotein complex biogenesis BP 4.904e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 7.039e-18
GO:0044765 single-organism transport BP 2.445e-15
GO:0044763 single-organism cellular process BP 3.256e-15
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell		 Log2 signal ratio
Laer pretreat GA Flg22 1h
1 245505_at AT4G15690 [Thioredoxin superfamily protein] 1.161 -0.329
2 245506_at AT4G15700 [Thioredoxin superfamily protein] 1.024 -0.647
3 245504_at AT4G15660 [Thioredoxin superfamily protein] 1.003 -0.456
4 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.987 0.054
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.933 -0.512
6 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.918 -0.207
7 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.853 0.052
8 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.824 -0.266
9 265387_at AT2G20670 unknown 0.778 0.046
10 246215_at AT4G37180 [Homeodomain-like superfamily protein] 0.709 0.049
11 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.707 0.105
12 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.689 0.109
13 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.680 0.160
14 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.647 0.068
15 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.625 0.071
16 260668_at AT1G19530 unknown 0.618 0.158
17 251935_at AT3G54090 FLN1, fructokinase-like 1 0.587 -0.155
18 250223_at AT5G14070 ROXY2 0.583 0.046
19 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.575 0.521
20 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.572 -0.218
21 245353_at AT4G16000 unknown 0.571 0.287
22 246142_at AT5G19970 unknown 0.566 -0.170
23 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.565 0.049
24 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.556 0.088
25 262399_at AT1G49500 unknown 0.555 -0.067
26 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.550 0.158
27 250472_at AT5G10210 unknown 0.544 -0.227
28 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 0.535 0.027
29 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.523 -0.095
30 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.503 0.206
31 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.500 -0.401
32 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 0.486 0.028
33 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.482 -0.311
34 261572_at AT1G01170 unknown 0.481 -0.310
35 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.474 0.081
36 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.465 -0.256
37 258079_at AT3G25940 [TFIIB zinc-binding protein] 0.464 -0.097
38 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.464 -0.538
39 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.463 -0.449
40 255436_at AT4G03150 unknown 0.443 -0.332
41 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 0.436 -0.163
42 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 0.084
43 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] 0.434 -0.019
44 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.433 -0.290
45 259766_at AT1G64360 unknown 0.430 0.090
46 247754_at AT5G59080 unknown 0.429 -0.231
47 248139_at AT5G54970 unknown 0.422 0.369
48 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 0.421 -0.058
49 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.412 -0.152
50 249076_at AT5G43970 ATTOM22-V, TOM22-V, translocase of outer membrane 22-V, TOM9-2, TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V 0.407 0.056
51 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.406 -0.027
52 258225_at AT3G15630 unknown 0.397 0.147
53 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] 0.388 0.007
54 266486_at AT2G47950 unknown 0.387 0.123
55 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 0.382 0.074
56 260096_at AT1G73240 unknown 0.381 0.037
57 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.379 0.265
58 254263_at AT4G23493 unknown 0.375 -0.013
59 254011_at AT4G26370 [antitermination NusB domain-containing protein] 0.373 -0.335
60 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.372 -0.178
61 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C 0.370 -0.021
62 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.365 0.075
63 254831_at AT4G12600 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.365 -0.055
64 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.360 -0.023
65 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.353 0.028
66 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.351 -0.025
67 260051_at AT1G78210 [alpha/beta-Hydrolases superfamily protein] 0.350 0.218
68 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.348 -0.045
69 262415_at AT1G49400 emb1129, embryo defective 1129 0.347 0.019
70 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 0.346 0.197
71 246505_at AT5G16250 unknown 0.346 0.126
72 265154_at AT1G30960 [GTP-binding family protein] 0.342 -0.021
73 246965_at AT5G24840 [tRNA (guanine-N-7) methyltransferase] 0.341 0.049
74 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.338 -0.181
75 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 0.335 -0.063
76 251834_at AT3G55170 [Ribosomal L29 family protein ] 0.331 0.044
77 259982_at AT1G76410 ATL8 0.331 0.046
78 262931_at AT1G65700 AtLSM8, LSM8, SM-like 8 0.330 0.076
79 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.328 0.202
80 256225_at AT1G56220 [Dormancy/auxin associated family protein] 0.328 0.066
81 262010_at AT1G35612 [expressed protein] 0.324 0.044
82 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] 0.321 -0.015
83 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.319 0.001
84 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.317 0.043
85 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.317 -0.061
86 267562_at AT2G39670 [Radical SAM superfamily protein] 0.316 -0.318
87 254840_at AT4G11930 unknown 0.311 0.056
88 250828_at AT5G05250 unknown 0.308 0.085
89 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.307 0.124
90 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.306 -0.503
91 255501_at AT4G02400 [U3 ribonucleoprotein (Utp) family protein] 0.305 -0.054
92 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.301 -0.032
93 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 0.299 0.070
94 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A 0.296 0.052
95 262584_at AT1G15440 ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2, PWP2, periodic tryptophan protein 2 0.293 -0.025
96 262819_at AT1G11600 CYP77B1, cytochrome P450, family 77, subfamily B, polypeptide 1 0.288 0.026
97 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.286 0.176
98 250434_at AT5G10390 H3.1, histone 3.1 0.286 0.222
99 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.285 0.049
100 256950_at AT3G19080 [SWIB complex BAF60b domain-containing protein] 0.284 0.004
101 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 0.279 0.048
102 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.976 0.070
103 250157_at AT5G15180 [Peroxidase superfamily protein] -0.932 -0.009
104 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] -0.910 -0.001
105 257330_at ATMG01290 ORF111C -0.860 0.056
106 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.860 -0.066
107 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.852 0.081
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.838 -0.326
109 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.822 0.101
110 248182_at AT5G54030 [Cysteine/Histidine-rich C1 domain family protein] -0.821 0.039
111 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 -0.815 -0.033
112 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.741 -0.084
113 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.731 -0.161
114 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.730 0.016
115 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.730 -0.071
116 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.722 -0.229
117 253741_at AT4G28890 [RING/U-box superfamily protein] -0.705 0.063
118 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] -0.703 0.208
119 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.698 0.062
120 265710_at AT2G03370 [Glycosyltransferase family 61 protein] -0.697 0.043
121 254193_at AT4G23870 unknown -0.697 0.103
122 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.686 0.026
123 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.684 0.219
124 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.680 -0.258
125 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.676 0.103
126 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 -0.670 0.174
127 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.668 -0.302
128 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.662 0.269
129 263658_at AT1G04490 unknown -0.653 -0.024
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.649 -0.262
131 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.648 -0.074
132 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.645 0.124
133 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 -0.629 0.138
134 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.624 -0.041
135 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.603 0.381
136 259701_at AT1G77770 [FUNCTIONS IN: zinc ion binding] -0.590 0.175
137 252218_at AT3G50150 unknown -0.589 0.057
138 264621_at AT2G17700 STY8, serine/threonine/tyrosine kinase 8 -0.586 0.080
139 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.577 0.086
140 257951_at AT3G21700 ATSGP2, SGP2 -0.572 0.241
141 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.572 0.294
142 250213_at AT5G13820 ATBP-1, ATBP1, ATTBP1, HPPBF-1, H-PROTEIN PROMOTE, TBP1, telomeric DNA binding protein 1 -0.571 0.169
143 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.569 0.166
144 245412_at AT4G17280 [Auxin-responsive family protein] -0.568 0.134
145 264590_at AT2G17710 unknown -0.563 -0.144
146 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.559 0.109
147 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.555 0.065
148 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.552 0.132
149 263989_at AT2G42880 ATMPK20, MAP kinase 20, MPK20, MAP kinase 20 -0.548 0.038
150 264989_at AT1G27200 unknown -0.542 0.074
151 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.541 -0.030
152 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] -0.540 0.076
153 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.539 0.064
154 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.528 0.491
155 258367_at AT3G14370 WAG2 -0.527 0.060
156 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.523 0.081
157 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.519 0.136
158 256997_at AT3G14067 [Subtilase family protein] -0.518 -0.206
159 251594_at AT3G57630 [exostosin family protein] -0.513 0.200
160 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 -0.511 -0.149
161 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.509 0.430
162 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.509 0.455
163 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.508 -0.013
164 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.506 0.135
165 250156_at AT5G15170 TDP1, tyrosyl-DNA phosphodiesterase 1 -0.505 -0.231
166 253150_at AT4G35660 unknown -0.503 0.053
167 259027_at AT3G09280 unknown -0.502 0.065
168 265688_at AT2G24300 [Calmodulin-binding protein] -0.501 0.060
169 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.501 -0.011
170 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] -0.500 0.249
171 259198_at AT3G03610 [ELMO/CED-12 family protein] -0.496 0.270
172 263830_at AT2G40260 [Homeodomain-like superfamily protein] -0.495 0.273
173 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.493 0.061
174 249435_at AT5G39970 [catalytics] -0.492 0.265
175 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.487 0.055
176 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.477 -0.192
177 261117_at AT1G75310 AUL1, auxilin-like 1 -0.476 -0.160
178 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.475 0.077
179 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.474 -0.278
180 254260_at AT4G23440 [Disease resistance protein (TIR-NBS class)] -0.473 0.023
181 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.472 -0.402
182 247248_at AT5G64560 ATMGT9, MGT9, magnesium transporter 9, MRS2-2 -0.471 -0.064
183 267319_at AT2G34660 ABCC2, ATP-binding cassette C2, AtABCC2, Arabidopsis thaliana ATP-binding cassette C2, ATMRP2, multidrug resistance-associated protein 2, EST4, MRP2, multidrug resistance-associated protein 2 -0.470 -0.177
184 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.470 0.019
185 259596_at AT1G28130 GH3.17 -0.468 0.387
186 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.468 -0.001
187 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.468 0.014
188 255642_at AT4G00820 iqd17, IQ-domain 17 -0.467 0.127
189 257761_at AT3G23090 WDL3 -0.462 0.094
190 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.461 0.175
191 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.459 0.433
192 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.457 -0.098
193 253708_at AT4G29210 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 -0.450 0.143
194 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.449 0.338
195 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.449 -0.095
196 254194_at AT4G23980 ARF9, auxin response factor 9 -0.449 -0.119
197 262626_at AT1G06430 FTSH8, FTSH protease 8 -0.447 -0.183
198 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.441 0.104
199 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.440 0.098
200 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.440 0.047
201 253622_at AT4G30560 ATCNGC9, cyclic nucleotide gated channel 9, CNGC9, cyclic nucleotide gated channel 9 -0.440 0.072