4.0:Information of module
2hr continuous KNO3 and MSX and Gln PeR cell
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.412e-08
GO:0042254 ribosome biogenesis BP 3.483e-07
GO:0022613 ribonucleoprotein complex biogenesis BP 4.904e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 7.039e-18
GO:0044765 single-organism transport BP 2.445e-15
GO:0044763 single-organism cellular process BP 3.256e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell		 Log2 signal ratio
Leafminer damaged seedlings
1 245505_at AT4G15690 [Thioredoxin superfamily protein] 1.161 0.402
2 245506_at AT4G15700 [Thioredoxin superfamily protein] 1.024 0.558
3 245504_at AT4G15660 [Thioredoxin superfamily protein] 1.003 0.668
4 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.987 -0.720
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.933 0.259
6 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.918 0.104
7 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.853 -0.019
8 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.824 -0.062
9 265387_at AT2G20670 unknown 0.778 -0.242
10 246215_at AT4G37180 [Homeodomain-like superfamily protein] 0.709 0.315
11 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.707 0.015
12 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.689 -0.021
13 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.680 0.965
14 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.647 -0.076
15 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.625 0.220
16 260668_at AT1G19530 unknown 0.618 0.053
17 251935_at AT3G54090 FLN1, fructokinase-like 1 0.587 -0.062
18 250223_at AT5G14070 ROXY2 0.583 -0.033
19 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.575 0.477
20 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.572 -0.340
21 245353_at AT4G16000 unknown 0.571 0.661
22 246142_at AT5G19970 unknown 0.566 -0.183
23 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.565 -0.020
24 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.556 -0.114
25 262399_at AT1G49500 unknown 0.555 0.187
26 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.550 0.405
27 250472_at AT5G10210 unknown 0.544 -0.029
28 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 0.535 -0.099
29 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.523 0.191
30 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.503 0.414
31 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.500 0.188
32 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 0.486 -0.503
33 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.482 -0.101
34 261572_at AT1G01170 unknown 0.481 -0.030
35 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.474 0.301
36 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.465 -0.079
37 258079_at AT3G25940 [TFIIB zinc-binding protein] 0.464 0.013
38 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.464 0.339
39 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.463 0.495
40 255436_at AT4G03150 unknown 0.443 -0.236
41 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 0.436 -0.271
42 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 -0.054
43 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] 0.434 -0.085
44 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.433 -0.327
45 259766_at AT1G64360 unknown 0.430 0.209
46 247754_at AT5G59080 unknown 0.429 0.178
47 248139_at AT5G54970 unknown 0.422 0.234
48 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 0.421 -0.038
49 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.412 -0.032
50 249076_at AT5G43970 ATTOM22-V, TOM22-V, translocase of outer membrane 22-V, TOM9-2, TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V 0.407 0.015
51 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.406 -0.028
52 258225_at AT3G15630 unknown 0.397 0.156
53 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] 0.388 0.012
54 266486_at AT2G47950 unknown 0.387 0.499
55 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 0.382 -0.116
56 260096_at AT1G73240 unknown 0.381 -0.146
57 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.379 -0.107
58 254263_at AT4G23493 unknown 0.375 -0.172
59 254011_at AT4G26370 [antitermination NusB domain-containing protein] 0.373 0.111
60 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.372 0.156
61 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C 0.370 -0.189
62 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.365 0.543
63 254831_at AT4G12600 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.365 -0.018
64 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.360 0.156
65 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.353 0.183
66 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.351 -0.292
67 260051_at AT1G78210 [alpha/beta-Hydrolases superfamily protein] 0.350 0.472
68 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.348 -0.048
69 262415_at AT1G49400 emb1129, embryo defective 1129 0.347 -0.073
70 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 0.346 -0.208
71 246505_at AT5G16250 unknown 0.346 -0.121
72 265154_at AT1G30960 [GTP-binding family protein] 0.342 -0.023
73 246965_at AT5G24840 [tRNA (guanine-N-7) methyltransferase] 0.341 0.017
74 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.338 -0.076
75 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 0.335 -0.174
76 251834_at AT3G55170 [Ribosomal L29 family protein ] 0.331 -0.026
77 259982_at AT1G76410 ATL8 0.331 0.077
78 262931_at AT1G65700 AtLSM8, LSM8, SM-like 8 0.330 0.106
79 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.328 0.091
80 256225_at AT1G56220 [Dormancy/auxin associated family protein] 0.328 0.087
81 262010_at AT1G35612 [expressed protein] 0.324 -0.027
82 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] 0.321 0.030
83 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.319 0.591
84 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.317 -0.030
85 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.317 -0.159
86 267562_at AT2G39670 [Radical SAM superfamily protein] 0.316 -0.134
87 254840_at AT4G11930 unknown 0.311 -0.007
88 250828_at AT5G05250 unknown 0.308 -0.367
89 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.307 0.701
90 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.306 -0.217
91 255501_at AT4G02400 [U3 ribonucleoprotein (Utp) family protein] 0.305 -0.082
92 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.301 -0.025
93 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 0.299 0.014
94 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A 0.296 0.061
95 262584_at AT1G15440 ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2, PWP2, periodic tryptophan protein 2 0.293 -0.034
96 262819_at AT1G11600 CYP77B1, cytochrome P450, family 77, subfamily B, polypeptide 1 0.288 0.090
97 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.286 -0.115
98 250434_at AT5G10390 H3.1, histone 3.1 0.286 0.061
99 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.285 0.164
100 256950_at AT3G19080 [SWIB complex BAF60b domain-containing protein] 0.284 -0.199
101 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 0.279 -0.288
102 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.976 -0.015
103 250157_at AT5G15180 [Peroxidase superfamily protein] -0.932 0.034
104 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] -0.910 -0.009
105 257330_at ATMG01290 ORF111C -0.860 -0.050
106 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.860 -0.144
107 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.852 0.008
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.838 -0.522
109 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.822 -0.008
110 248182_at AT5G54030 [Cysteine/Histidine-rich C1 domain family protein] -0.821 0.038
111 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 -0.815 -0.145
112 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.741 0.383
113 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.731 0.011
114 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.730 0.107
115 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.730 -0.007
116 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.722 0.177
117 253741_at AT4G28890 [RING/U-box superfamily protein] -0.705 -0.032
118 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] -0.703 -0.057
119 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.698 -0.463
120 265710_at AT2G03370 [Glycosyltransferase family 61 protein] -0.697 -0.016
121 254193_at AT4G23870 unknown -0.697 0.036
122 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.686 -0.019
123 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.684 0.184
124 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.680 -0.374
125 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.676 -0.013
126 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 -0.670 0.051
127 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.668 -0.142
128 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.662 0.022
129 263658_at AT1G04490 unknown -0.653 -0.009
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.649 0.074
131 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.648 -0.051
132 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.645 -0.045
133 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 -0.629 0.638
134 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.624 -0.372
135 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.603 0.061
136 259701_at AT1G77770 [FUNCTIONS IN: zinc ion binding] -0.590 -0.089
137 252218_at AT3G50150 unknown -0.589 -0.019
138 264621_at AT2G17700 STY8, serine/threonine/tyrosine kinase 8 -0.586 0.062
139 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.577 -0.193
140 257951_at AT3G21700 ATSGP2, SGP2 -0.572 0.362
141 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.572 0.047
142 250213_at AT5G13820 ATBP-1, ATBP1, ATTBP1, HPPBF-1, H-PROTEIN PROMOTE, TBP1, telomeric DNA binding protein 1 -0.571 0.260
143 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.569 0.307
144 245412_at AT4G17280 [Auxin-responsive family protein] -0.568 0.027
145 264590_at AT2G17710 unknown -0.563 -0.084
146 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.559 0.001
147 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.555 0.096
148 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.552 -0.122
149 263989_at AT2G42880 ATMPK20, MAP kinase 20, MPK20, MAP kinase 20 -0.548 -0.126
150 264989_at AT1G27200 unknown -0.542 0.131
151 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.541 -0.082
152 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] -0.540 0.021
153 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.539 0.114
154 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.528 0.007
155 258367_at AT3G14370 WAG2 -0.527 -0.107
156 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.523 0.025
157 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.519 -0.024
158 256997_at AT3G14067 [Subtilase family protein] -0.518 -0.064
159 251594_at AT3G57630 [exostosin family protein] -0.513 0.060
160 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 -0.511 0.214
161 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.509 0.080
162 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.509 0.184
163 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.508 -0.123
164 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.506 0.436
165 250156_at AT5G15170 TDP1, tyrosyl-DNA phosphodiesterase 1 -0.505 -0.141
166 253150_at AT4G35660 unknown -0.503 0.022
167 259027_at AT3G09280 unknown -0.502 -0.055
168 265688_at AT2G24300 [Calmodulin-binding protein] -0.501 -0.066
169 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.501 -0.026
170 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] -0.500 0.647
171 259198_at AT3G03610 [ELMO/CED-12 family protein] -0.496 0.155
172 263830_at AT2G40260 [Homeodomain-like superfamily protein] -0.495 -0.137
173 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.493 -0.024
174 249435_at AT5G39970 [catalytics] -0.492 -0.029
175 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.487 0.048
176 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.477 -0.121
177 261117_at AT1G75310 AUL1, auxilin-like 1 -0.476 -0.061
178 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.475 0.090
179 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.474 -0.360
180 254260_at AT4G23440 [Disease resistance protein (TIR-NBS class)] -0.473 -0.296
181 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.472 0.032
182 247248_at AT5G64560 ATMGT9, MGT9, magnesium transporter 9, MRS2-2 -0.471 0.277
183 267319_at AT2G34660 ABCC2, ATP-binding cassette C2, AtABCC2, Arabidopsis thaliana ATP-binding cassette C2, ATMRP2, multidrug resistance-associated protein 2, EST4, MRP2, multidrug resistance-associated protein 2 -0.470 -0.230
184 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.470 -0.391
185 259596_at AT1G28130 GH3.17 -0.468 -0.044
186 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.468 -0.075
187 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.468 -0.322
188 255642_at AT4G00820 iqd17, IQ-domain 17 -0.467 -0.267
189 257761_at AT3G23090 WDL3 -0.462 -0.128
190 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.461 0.001
191 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.459 0.971
192 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.457 0.509
193 253708_at AT4G29210 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 -0.450 0.278
194 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.449 0.689
195 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.449 0.067
196 254194_at AT4G23980 ARF9, auxin response factor 9 -0.449 -0.124
197 262626_at AT1G06430 FTSH8, FTSH protease 8 -0.447 -0.174
198 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.441 0.517
199 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.440 -0.025
200 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.440 -0.071
201 253622_at AT4G30560 ATCNGC9, cyclic nucleotide gated channel 9, CNGC9, cyclic nucleotide gated channel 9 -0.440 0.006