4.0:Information of module
2hr continuous KNO3 and MSX and Gln PeR cell
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 4.412e-08
GO:0042254 ribosome biogenesis BP 3.483e-07
GO:0022613 ribonucleoprotein complex biogenesis BP 4.904e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044699 single-organism process BP 7.039e-18
GO:0044765 single-organism transport BP 2.445e-15
GO:0044763 single-organism cellular process BP 3.256e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 and MSX and Gln PeR cell		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 245505_at AT4G15690 [Thioredoxin superfamily protein] 1.161 0.124
2 245506_at AT4G15700 [Thioredoxin superfamily protein] 1.024 0.018
3 245504_at AT4G15660 [Thioredoxin superfamily protein] 1.003 0.052
4 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.987 0.051
5 245392_at AT4G15680 [Thioredoxin superfamily protein] 0.933 -0.089
6 251195_at AT3G62930 [Thioredoxin superfamily protein] 0.918 -0.024
7 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.853 -0.267
8 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.824 0.002
9 265387_at AT2G20670 unknown 0.778 0.083
10 246215_at AT4G37180 [Homeodomain-like superfamily protein] 0.709 0.085
11 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 0.707 0.206
12 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.689 -0.066
13 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.680 0.012
14 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] 0.647 0.022
15 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.625 0.085
16 260668_at AT1G19530 unknown 0.618 0.007
17 251935_at AT3G54090 FLN1, fructokinase-like 1 0.587 0.094
18 250223_at AT5G14070 ROXY2 0.583 0.017
19 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.575 0.081
20 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.572 0.123
21 245353_at AT4G16000 unknown 0.571 -0.085
22 246142_at AT5G19970 unknown 0.566 0.020
23 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.565 0.051
24 249862_at AT5G22920 [CHY-type/CTCHY-type/RING-type Zinc finger protein] 0.556 -0.556
25 262399_at AT1G49500 unknown 0.555 -0.062
26 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.550 -0.069
27 250472_at AT5G10210 unknown 0.544 0.007
28 251956_at AT3G53460 CP29, chloroplast RNA-binding protein 29 0.535 0.018
29 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.523 -0.070
30 260741_at AT1G15040 GAT, glutamine amidotransferase, GAT1_2.1, glutamine amidotransferase 1_2.1 0.503 0.131
31 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.500 0.076
32 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 0.486 -0.171
33 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 0.482 0.615
34 261572_at AT1G01170 unknown 0.481 -0.036
35 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.474 -0.042
36 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.465 -0.222
37 258079_at AT3G25940 [TFIIB zinc-binding protein] 0.464 0.069
38 260547_at AT2G43550 [Scorpion toxin-like knottin superfamily protein] 0.464 -0.065
39 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.463 -0.130
40 255436_at AT4G03150 unknown 0.443 0.020
41 263483_at AT2G04030 AtHsp90.5, HEAT SHOCK PROTEIN 90.5, AtHsp90C, CR88, EMB1956, EMBRYO DEFECTIVE 1956, Hsp88.1, HEAT SHOCK PROTEIN 88.1, HSP90.5, HEAT SHOCK PROTEIN 90.5 0.436 -0.011
42 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.434 0.151
43 251483_at AT3G59650 [mitochondrial ribosomal protein L51/S25/CI-B8 family protein] 0.434 -0.038
44 260805_at AT1G78320 ATGSTU23, glutathione S-transferase TAU 23, GSTU23, glutathione S-transferase TAU 23 0.433 0.384
45 259766_at AT1G64360 unknown 0.430 -0.069
46 247754_at AT5G59080 unknown 0.429 -0.026
47 248139_at AT5G54970 unknown 0.422 0.185
48 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 0.421 0.155
49 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.412 0.056
50 249076_at AT5G43970 ATTOM22-V, TOM22-V, translocase of outer membrane 22-V, TOM9-2, TRANSLOCASE OUTER MITOCHONDRIAL MEMBRANE 22-V 0.407 -0.031
51 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 0.406 -0.061
52 258225_at AT3G15630 unknown 0.397 0.105
53 261911_at AT1G80750 [Ribosomal protein L30/L7 family protein] 0.388 -0.059
54 266486_at AT2G47950 unknown 0.387 0.116
55 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 0.382 -0.128
56 260096_at AT1G73240 unknown 0.381 -0.086
57 256537_at AT1G33340 [ENTH/ANTH/VHS superfamily protein] 0.379 -0.084
58 254263_at AT4G23493 unknown 0.375 0.063
59 254011_at AT4G26370 [antitermination NusB domain-containing protein] 0.373 -0.106
60 259616_at AT1G47960 ATC/VIF1, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1, C/VIF1, cell wall / vacuolar inhibitor of fructosidase 1 0.372 -0.044
61 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C 0.370 -0.050
62 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.365 -0.089
63 254831_at AT4G12600 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] 0.365 0.126
64 249126_at AT5G43380 TOPP6, type one serine/threonine protein phosphatase 6 0.360 0.100
65 245367_at AT4G16265 NRPB9B, NRPD9B, NRPE9B 0.353 -0.128
66 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.351 0.153
67 260051_at AT1G78210 [alpha/beta-Hydrolases superfamily protein] 0.350 0.123
68 258965_at AT3G10530 [Transducin/WD40 repeat-like superfamily protein] 0.348 -0.021
69 262415_at AT1G49400 emb1129, embryo defective 1129 0.347 0.070
70 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 0.346 0.083
71 246505_at AT5G16250 unknown 0.346 0.096
72 265154_at AT1G30960 [GTP-binding family protein] 0.342 -0.013
73 246965_at AT5G24840 [tRNA (guanine-N-7) methyltransferase] 0.341 0.044
74 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.338 -0.115
75 259193_at AT3G01480 ATCYP38, ARABIDOPSIS CYCLOPHILIN 38, CYP38, cyclophilin 38 0.335 0.120
76 251834_at AT3G55170 [Ribosomal L29 family protein ] 0.331 0.079
77 259982_at AT1G76410 ATL8 0.331 0.105
78 262931_at AT1G65700 AtLSM8, LSM8, SM-like 8 0.330 0.310
79 264726_at AT1G22985 CRF7, cytokinin response factor 7 0.328 0.070
80 256225_at AT1G56220 [Dormancy/auxin associated family protein] 0.328 -0.072
81 262010_at AT1G35612 [expressed protein] 0.324 -0.034
82 246479_at AT5G16060 [Cytochrome c oxidase biogenesis protein Cmc1-like] 0.321 -0.115
83 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 0.319 -0.038
84 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.317 -0.085
85 264561_at AT1G55810 UKL3, uridine kinase-like 3 0.317 0.015
86 267562_at AT2G39670 [Radical SAM superfamily protein] 0.316 0.045
87 254840_at AT4G11930 unknown 0.311 -0.003
88 250828_at AT5G05250 unknown 0.308 -0.076
89 259977_at AT1G76590 [PLATZ transcription factor family protein] 0.307 -0.144
90 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.306 -0.075
91 255501_at AT4G02400 [U3 ribonucleoprotein (Utp) family protein] 0.305 -0.083
92 265032_at AT1G61580 ARP2, ARABIDOPSIS RIBOSOMAL PROTEIN 2, RPL3B, R-protein L3 B 0.301 0.015
93 245739_at AT1G44110 CYCA1;1, Cyclin A1;1 0.299 -0.040
94 245122_at AT2G47420 DIM1A, adenosine dimethyl transferase 1A 0.296 0.139
95 262584_at AT1G15440 ATPWP2, PERIODIC TRYPTOPHAN PROTEIN 2, PWP2, periodic tryptophan protein 2 0.293 0.153
96 262819_at AT1G11600 CYP77B1, cytochrome P450, family 77, subfamily B, polypeptide 1 0.288 0.093
97 264969_at AT1G67320 EMB2813, EMBRYO DEFECTIVE 2813 0.286 0.090
98 250434_at AT5G10390 H3.1, histone 3.1 0.286 -0.137
99 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a 0.285 0.029
100 256950_at AT3G19080 [SWIB complex BAF60b domain-containing protein] 0.284 0.137
101 247524_at AT5G61440 ACHT5, atypical CYS HIS rich thioredoxin 5 0.279 0.060
102 266307_at AT2G27000 CYP705A8, cytochrome P450, family 705, subfamily A, polypeptide 8 -0.976 -0.195
103 250157_at AT5G15180 [Peroxidase superfamily protein] -0.932 -0.099
104 267215_at AT2G02630 [Cysteine/Histidine-rich C1 domain family protein] -0.910 -0.117
105 257330_at ATMG01290 ORF111C -0.860 0.097
106 260540_at AT2G43500 NLP8, NIN-like protein 8 -0.860 -0.213
107 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.852 -0.101
108 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 -0.838 0.071
109 247591_at AT5G60770 ATNRT2.4, ARABIDOPSIS THALIANA NITRATE TRANSPORTER 2.4, NRT2.4, nitrate transporter 2.4 -0.822 0.138
110 248182_at AT5G54030 [Cysteine/Histidine-rich C1 domain family protein] -0.821 0.176
111 250688_at AT5G06510 NF-YA10, nuclear factor Y, subunit A10 -0.815 -0.038
112 250054_at AT5G17860 CAX7, calcium exchanger 7 -0.741 0.044
113 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 -0.731 -0.060
114 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.730 0.083
115 253910_at AT4G27290 [S-locus lectin protein kinase family protein] -0.730 0.171
116 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.722 -0.092
117 253741_at AT4G28890 [RING/U-box superfamily protein] -0.705 -0.130
118 251761_at AT3G55700 [UDP-Glycosyltransferase superfamily protein] -0.703 -0.044
119 262978_at AT1G75780 TUB1, tubulin beta-1 chain -0.698 0.014
120 265710_at AT2G03370 [Glycosyltransferase family 61 protein] -0.697 -0.004
121 254193_at AT4G23870 unknown -0.697 0.017
122 252490_at AT3G46720 [UDP-Glycosyltransferase superfamily protein] -0.686 0.141
123 253654_at AT4G30060 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.684 -0.193
124 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] -0.680 0.017
125 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.676 0.008
126 247052_at AT5G66700 ATHB53, ARABIDOPSIS THALIANA HOMEOBOX 53, HB-8, HOMEOBOX-8, HB53, homeobox 53 -0.670 0.056
127 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 -0.668 0.040
128 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.662 -0.048
129 263658_at AT1G04490 unknown -0.653 -0.013
130 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.649 0.041
131 252530_at AT3G46500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.648 -0.154
132 250719_at AT5G06250 DPA4, DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4 -0.645 0.180
133 263565_at AT2G15390 atfut4, FUT4, fucosyltransferase 4 -0.629 0.071
134 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.624 0.117
135 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 -0.603 0.024
136 259701_at AT1G77770 [FUNCTIONS IN: zinc ion binding] -0.590 0.124
137 252218_at AT3G50150 unknown -0.589 -0.190
138 264621_at AT2G17700 STY8, serine/threonine/tyrosine kinase 8 -0.586 0.057
139 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.577 -0.131
140 257951_at AT3G21700 ATSGP2, SGP2 -0.572 0.046
141 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.572 0.055
142 250213_at AT5G13820 ATBP-1, ATBP1, ATTBP1, HPPBF-1, H-PROTEIN PROMOTE, TBP1, telomeric DNA binding protein 1 -0.571 -0.119
143 249942_at AT5G22300 AtNIT4, NITRILASE 4, NIT4, nitrilase 4 -0.569 -0.202
144 245412_at AT4G17280 [Auxin-responsive family protein] -0.568 -0.097
145 264590_at AT2G17710 unknown -0.563 0.032
146 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.559 -0.136
147 247554_at AT5G61010 ATEXO70E2, exocyst subunit exo70 family protein E2, EXO70E2, exocyst subunit exo70 family protein E2 -0.555 -0.327
148 250049_at AT5G17780 [alpha/beta-Hydrolases superfamily protein] -0.552 0.147
149 263989_at AT2G42880 ATMPK20, MAP kinase 20, MPK20, MAP kinase 20 -0.548 0.094
150 264989_at AT1G27200 unknown -0.542 0.093
151 265677_at AT2G32080 PUR ALPHA-1, purin-rich alpha 1 -0.541 -0.014
152 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] -0.540 -0.095
153 249562_at AT5G38350 [Disease resistance protein (NBS-LRR class) family] -0.539 0.144
154 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.528 0.099
155 258367_at AT3G14370 WAG2 -0.527 -0.083
156 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.523 0.040
157 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 -0.519 -0.277
158 256997_at AT3G14067 [Subtilase family protein] -0.518 0.165
159 251594_at AT3G57630 [exostosin family protein] -0.513 0.086
160 251584_at AT3G58620 TTL4, tetratricopetide-repeat thioredoxin-like 4 -0.511 0.066
161 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.509 -0.057
162 246978_at AT5G24910 CYP714A1, cytochrome P450, family 714, subfamily A, polypeptide 1, ELA1, EUI-like p450 A1 -0.509 -0.049
163 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.508 0.043
164 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 -0.506 0.128
165 250156_at AT5G15170 TDP1, tyrosyl-DNA phosphodiesterase 1 -0.505 -0.088
166 253150_at AT4G35660 unknown -0.503 0.131
167 259027_at AT3G09280 unknown -0.502 -0.007
168 265688_at AT2G24300 [Calmodulin-binding protein] -0.501 0.094
169 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.501 0.061
170 252940_at AT4G39270 [Leucine-rich repeat protein kinase family protein] -0.500 0.002
171 259198_at AT3G03610 [ELMO/CED-12 family protein] -0.496 -0.143
172 263830_at AT2G40260 [Homeodomain-like superfamily protein] -0.495 -0.039
173 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.493 0.079
174 249435_at AT5G39970 [catalytics] -0.492 0.149
175 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 -0.487 -0.219
176 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.477 -0.209
177 261117_at AT1G75310 AUL1, auxilin-like 1 -0.476 -0.160
178 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.475 0.086
179 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.474 -0.019
180 254260_at AT4G23440 [Disease resistance protein (TIR-NBS class)] -0.473 -0.010
181 267423_at AT2G35060 KUP11, K+ uptake permease 11 -0.472 0.058
182 247248_at AT5G64560 ATMGT9, MGT9, magnesium transporter 9, MRS2-2 -0.471 -0.308
183 267319_at AT2G34660 ABCC2, ATP-binding cassette C2, AtABCC2, Arabidopsis thaliana ATP-binding cassette C2, ATMRP2, multidrug resistance-associated protein 2, EST4, MRP2, multidrug resistance-associated protein 2 -0.470 -0.056
184 250344_at AT5G11930 [Thioredoxin superfamily protein] -0.470 -0.071
185 259596_at AT1G28130 GH3.17 -0.468 -0.114
186 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.468 0.101
187 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.468 -0.168
188 255642_at AT4G00820 iqd17, IQ-domain 17 -0.467 0.098
189 257761_at AT3G23090 WDL3 -0.462 -0.073
190 256736_at AT3G29410 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.461 -0.007
191 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] -0.459 0.086
192 245052_at AT2G26440 PME12, pectin methylesterase 12 -0.457 -0.034
193 253708_at AT4G29210 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 -0.450 0.096
194 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.449 0.083
195 266011_at AT2G37440 [DNAse I-like superfamily protein] -0.449 0.066
196 254194_at AT4G23980 ARF9, auxin response factor 9 -0.449 0.206
197 262626_at AT1G06430 FTSH8, FTSH protease 8 -0.447 -0.088
198 262887_at AT1G14780 [MAC/Perforin domain-containing protein] -0.441 -0.137
199 267217_at AT2G02610 [Cysteine/Histidine-rich C1 domain family protein] -0.440 0.155
200 258704_at AT3G09780 ATCRR1, CCR1, CRINKLY4 related 1 -0.440 -0.090
201 253622_at AT4G30560 ATCNGC9, cyclic nucleotide gated channel 9, CNGC9, cyclic nucleotide gated channel 9 -0.440 -0.069