4.0:Information of module
2hr continuous KNO3 LRCR cell
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0043085 positive regulation of catalytic activit... BP 1.097e-03
GO:0044093 positive regulation of molecular functio... BP 1.194e-03
GO:0009755 hormone-mediated signaling pathway BP 1.808e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006598 polyamine catabolic process BP 3.096e-03
GO:0009698 phenylpropanoid metabolic process BP 5.130e-03
GO:0009699 phenylpropanoid biosynthetic process BP 8.408e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 LRCR cell		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 266700_at AT2G19740 [Ribosomal protein L31e family protein] 0.751 0.763
2 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.611 -0.072
3 246142_at AT5G19970 unknown 0.534 0.468
4 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.483 -0.332
5 262399_at AT1G49500 unknown 0.467 1.282
6 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.409 -0.104
7 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.376 -0.124
8 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] 0.376 -0.175
9 262263_at AT1G70940 ATPIN3, ARABIDOPSIS PIN-FORMED 3, PIN3, PIN-FORMED 3 0.374 -0.247
10 263283_at AT2G36090 [F-box family protein] 0.362 0.682
11 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 0.355 0.021
12 259805_at AT1G47890 AtRLP7, receptor like protein 7, RLP7, receptor like protein 7 0.354 -0.978
13 248860_at AT5G46670 [Cysteine/Histidine-rich C1 domain family protein] 0.354 -0.945
14 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.350 0.415
15 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 0.341 -0.364
16 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 0.340 0.464
17 266361_at AT2G32450 [Calcium-binding tetratricopeptide family protein] 0.335 -0.183
18 247301_at AT5G63920 AtTOP3alpha, TOP3A, topoisomerase 3alpha 0.333 -0.353
19 264673_at AT1G09795 ATATP-PRT2, ATP phosphoribosyl transferase 2, ATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B 0.323 0.066
20 255849_at AT2G33320 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.318 -0.247
21 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.318 -0.398
22 265523_at AT2G06190 [gypsy-like retrotransposon family, has a 5.2e-36 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)] 0.306 0.296
23 257168_at AT3G24430 HCF101, HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.304 0.322
24 247149_at AT5G65660 [hydroxyproline-rich glycoprotein family protein] 0.303 0.479
25 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.302 -0.428
26 255419_at AT4G03230 [S-locus lectin protein kinase family protein] 0.300 -0.126
27 254728_at AT4G13690 unknown 0.298 -0.697
28 263488_at AT2G31840 MRL7-L, Mesophyll-cell RNAi Library line 7-like 0.298 -0.394
29 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 0.293 0.529
30 252151_at AT3G51320 [Pentatricopeptide repeat (PPR) superfamily protein] 0.288 -0.268
31 260226_at AT1G74660 MIF1, mini zinc finger 1 0.284 -0.197
32 266813_at AT2G44920 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.283 -0.568
33 267535_at AT2G41940 ZFP8, zinc finger protein 8 0.281 0.162
34 256952_at AT3G21160 MANIA, ALPHA-MANNOSIDASE IA, MNS2, alpha-mannosidase 2 0.279 -0.764
35 258522_at AT3G06660 [PAPA-1-like family protein / zinc finger (HIT type) family protein] 0.276 -0.027
36 250158_at AT5G15190 unknown 0.271 -0.191
37 266964_at AT2G39480 ABCB6, ATP-binding cassette B6, PGP6, P-glycoprotein 6 0.269 -0.848
38 257013_at AT3G26922 [F-box/RNI-like superfamily protein] 0.267 0.397
39 249913_at AT5G22810 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.265 -0.239
40 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.263 -0.419
41 257645_at AT3G25790 [myb-like transcription factor family protein] 0.263 0.873
42 261410_at AT1G07610 MT1C, metallothionein 1C 0.262 1.085
43 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.260 -0.250
44 260343_at AT1G69200 FLN2, fructokinase-like 2 0.258 0.586
45 253965_at AT4G26490 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.257 -1.121
46 246698_at AT5G30480 [CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-37 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.255 -0.563
47 266570_at AT2G24090 PRPL35, plastid ribosomal protein L35 0.250 0.868
48 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -0.670 0.730
49 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] -0.468 0.638
50 254408_at AT4G21390 B120 -0.450 -0.453
51 246033_at AT5G08280 HEMC, hydroxymethylbilane synthase, RUG1, RUGOSA 1 -0.438 0.438
52 258648_at AT3G07900 [O-fucosyltransferase family protein] -0.389 -0.142
53 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.387 -0.647
54 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.379 -0.819
55 251744_at AT3G56010 unknown -0.362 -0.134
56 250327_at AT5G12050 unknown -0.358 -0.799
57 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 -0.356 0.009
58 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.354 -0.442
59 253635_at AT4G30620 [Uncharacterised BCR, YbaB family COG0718] -0.345 1.105
60 246883_at AT5G26190 [Cysteine/Histidine-rich C1 domain family protein] -0.332 -0.135
61 247103_at AT5G66610 DAR7, DA1-related protein 7 -0.332 0.287
62 247972_at AT5G56740 HAC07, HAC7, HAG02, HAG2, histone acetyltransferase of the GNAT family 2 -0.324 0.300
63 259095_at AT3G05020 ACP, ACYL CARRIER PROTEIN, ACP1, acyl carrier protein 1 -0.323 1.003
64 264119_at AT1G79180 ATMYB63, MYB DOMAIN PROTEIN 63, MYB63, myb domain protein 63 -0.320 0.371
65 250150_at AT5G14710 unknown -0.315 0.907
66 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.307 -0.285
67 250389_at AT5G11320 AtYUC4, YUC4, YUCCA4 -0.307 -0.958
68 247237_at AT5G64600 [O-fucosyltransferase family protein] -0.306 0.098
69 246036_at AT5G08370 AGAL2, alpha-galactosidase 2, AtAGAL2, alpha-galactosidase 2 -0.304 0.101
70 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 -0.297 0.183
71 247425_at AT5G62550 unknown -0.291 -0.116
72 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.289 -0.525
73 266203_at AT2G02230 AtPP2-B1, phloem protein 2-B1, PP2-B1, phloem protein 2-B1 -0.286 -0.641
74 259274_at AT3G01220 ATHB20, homeobox protein 20, HB20, homeobox protein 20 -0.284 0.185
75 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.282 -0.696
76 251504_at AT3G59030 ATTT12, A. THALIANA TRANSPARENT TESTA, TT12, TRANSPARENT TESTA 12 -0.279 -0.414
77 251114_at AT5G01380 [Homeodomain-like superfamily protein] -0.278 -1.545
78 267358_at AT2G39890 ATPROT1, PROLINE TRANSPORTER 1, PROT1, proline transporter 1 -0.278 -0.780
79 254807_at AT4G12700 unknown -0.274 0.675
80 246962_s_at AT5G24800 ATBZIP9, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, BZIP9, basic leucine zipper 9, BZO2H2, BASIC LEUCINE ZIPPER O2 HOMOLOG 2 -0.273 0.684
81 247597_at AT5G60860 AtRABA1f, RAB GTPase homolog A1F, RABA1f, RAB GTPase homolog A1F -0.264 -0.029
82 257825_at AT3G26700 [Protein kinase superfamily protein] -0.264 0.204
83 244913_at ATMG00840 ORF121B -0.262 -0.034
84 255243_at AT4G05590 unknown -0.262 -1.177
85 249610_at AT5G37360 unknown -0.260 0.279
86 245025_at ATCG00130 ATPF -0.259 -0.449
87 245444_at AT4G16740 ATTPS03, terpene synthase 03, TPS03, terpene synthase 03 -0.258 -0.881
88 260968_at AT1G12250 [Pentapeptide repeat-containing protein] -0.257 0.181
89 249579_at AT5G37680 ARLA1A, ADP-ribosylation factor-like A1A, ATARLA1A, ADP-ribosylation factor-like A1A -0.256 0.229
90 253768_at AT4G28550 [Ypt/Rab-GAP domain of gyp1p superfamily protein] -0.253 -0.444
91 251671_at AT3G57210 unknown -0.252 -0.747
92 250812_at AT5G04900 NOL, NYC1-like -0.250 0.124
93 249332_at AT5G40980 unknown -0.249 0.958