4.0:Information of module
2hr continuous KNO3 LRCR cell
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0043085 positive regulation of catalytic activit... BP 1.097e-03
GO:0044093 positive regulation of molecular functio... BP 1.194e-03
GO:0009755 hormone-mediated signaling pathway BP 1.808e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006598 polyamine catabolic process BP 3.096e-03
GO:0009698 phenylpropanoid metabolic process BP 5.130e-03
GO:0009699 phenylpropanoid biosynthetic process BP 8.408e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 LRCR cell		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 266700_at AT2G19740 [Ribosomal protein L31e family protein] 0.751 -0.031
2 264790_at AT2G17820 AHK1, ATHK1, histidine kinase 1, HK1, histidine kinase 1 0.611 0.114
3 246142_at AT5G19970 unknown 0.534 -0.059
4 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.483 -0.049
5 262399_at AT1G49500 unknown 0.467 -0.024
6 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.409 -0.024
7 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 0.376 -0.009
8 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] 0.376 -0.125
9 262263_at AT1G70940 ATPIN3, ARABIDOPSIS PIN-FORMED 3, PIN3, PIN-FORMED 3 0.374 -0.045
10 263283_at AT2G36090 [F-box family protein] 0.362 -0.041
11 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 0.355 0.029
12 259805_at AT1G47890 AtRLP7, receptor like protein 7, RLP7, receptor like protein 7 0.354 0.159
13 248860_at AT5G46670 [Cysteine/Histidine-rich C1 domain family protein] 0.354 -0.058
14 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.350 0.092
15 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 0.341 0.031
16 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 0.340 -0.093
17 266361_at AT2G32450 [Calcium-binding tetratricopeptide family protein] 0.335 0.040
18 247301_at AT5G63920 AtTOP3alpha, TOP3A, topoisomerase 3alpha 0.333 -0.054
19 264673_at AT1G09795 ATATP-PRT2, ATP phosphoribosyl transferase 2, ATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B 0.323 -0.011
20 255849_at AT2G33320 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.318 0.016
21 247638_at AT5G60490 AtFLA12, FLA12, FASCICLIN-like arabinogalactan-protein 12 0.318 -0.067
22 265523_at AT2G06190 [gypsy-like retrotransposon family, has a 5.2e-36 P-value blast match to GB:CAA73042 polyprotein (Gypsy_Ty3-element) (Ananas comosus)] 0.306 0.034
23 257168_at AT3G24430 HCF101, HIGH-CHLOROPHYLL-FLUORESCENCE 101 0.304 -0.038
24 247149_at AT5G65660 [hydroxyproline-rich glycoprotein family protein] 0.303 0.028
25 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.302 -0.021
26 255419_at AT4G03230 [S-locus lectin protein kinase family protein] 0.300 0.015
27 254728_at AT4G13690 unknown 0.298 -0.041
28 263488_at AT2G31840 MRL7-L, Mesophyll-cell RNAi Library line 7-like 0.298 -0.056
29 252911_at AT4G39510 CYP96A12, cytochrome P450, family 96, subfamily A, polypeptide 12 0.293 -0.060
30 252151_at AT3G51320 [Pentatricopeptide repeat (PPR) superfamily protein] 0.288 -0.027
31 260226_at AT1G74660 MIF1, mini zinc finger 1 0.284 -0.080
32 266813_at AT2G44920 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.283 -0.071
33 267535_at AT2G41940 ZFP8, zinc finger protein 8 0.281 -0.114
34 256952_at AT3G21160 MANIA, ALPHA-MANNOSIDASE IA, MNS2, alpha-mannosidase 2 0.279 -0.001
35 258522_at AT3G06660 [PAPA-1-like family protein / zinc finger (HIT type) family protein] 0.276 -0.030
36 250158_at AT5G15190 unknown 0.271 -0.137
37 266964_at AT2G39480 ABCB6, ATP-binding cassette B6, PGP6, P-glycoprotein 6 0.269 0.079
38 257013_at AT3G26922 [F-box/RNI-like superfamily protein] 0.267 -0.078
39 249913_at AT5G22810 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.265 -0.062
40 261613_at AT1G49720 ABF1, abscisic acid responsive element-binding factor 1, AtABF1 0.263 0.091
41 257645_at AT3G25790 [myb-like transcription factor family protein] 0.263 -0.049
42 261410_at AT1G07610 MT1C, metallothionein 1C 0.262 0.028
43 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.260 0.045
44 260343_at AT1G69200 FLN2, fructokinase-like 2 0.258 0.002
45 253965_at AT4G26490 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.257 -0.015
46 246698_at AT5G30480 [CACTA-like transposase family (Ptta/En/Spm), has a 6.2e-37 P-value blast match to At5g29026.1/8-244 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.255 -0.118
47 266570_at AT2G24090 PRPL35, plastid ribosomal protein L35 0.250 -0.053
48 260230_at AT1G74500 ATBS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, bHLH135, basic helix-loop-helix protein 135, BS1, activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1, PRE3, PACLOBUTRAZOL RESISTANCE 3, TMO7, TARGET OF MONOPTEROS 7 -0.670 -0.008
49 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] -0.468 -0.096
50 254408_at AT4G21390 B120 -0.450 0.218
51 246033_at AT5G08280 HEMC, hydroxymethylbilane synthase, RUG1, RUGOSA 1 -0.438 -0.039
52 258648_at AT3G07900 [O-fucosyltransferase family protein] -0.389 -0.069
53 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A -0.387 -0.061
54 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 -0.379 -0.057
55 251744_at AT3G56010 unknown -0.362 -0.043
56 250327_at AT5G12050 unknown -0.358 -0.176
57 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 -0.356 -0.037
58 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 -0.354 0.053
59 253635_at AT4G30620 [Uncharacterised BCR, YbaB family COG0718] -0.345 -0.061
60 246883_at AT5G26190 [Cysteine/Histidine-rich C1 domain family protein] -0.332 0.028
61 247103_at AT5G66610 DAR7, DA1-related protein 7 -0.332 0.034
62 247972_at AT5G56740 HAC07, HAC7, HAG02, HAG2, histone acetyltransferase of the GNAT family 2 -0.324 0.040
63 259095_at AT3G05020 ACP, ACYL CARRIER PROTEIN, ACP1, acyl carrier protein 1 -0.323 -0.032
64 264119_at AT1G79180 ATMYB63, MYB DOMAIN PROTEIN 63, MYB63, myb domain protein 63 -0.320 0.012
65 250150_at AT5G14710 unknown -0.315 -0.054
66 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.307 -0.076
67 250389_at AT5G11320 AtYUC4, YUC4, YUCCA4 -0.307 -0.043
68 247237_at AT5G64600 [O-fucosyltransferase family protein] -0.306 0.014
69 246036_at AT5G08370 AGAL2, alpha-galactosidase 2, AtAGAL2, alpha-galactosidase 2 -0.304 0.022
70 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 -0.297 0.029
71 247425_at AT5G62550 unknown -0.291 0.083
72 267425_at AT2G34810 [FAD-binding Berberine family protein] -0.289 0.046
73 266203_at AT2G02230 AtPP2-B1, phloem protein 2-B1, PP2-B1, phloem protein 2-B1 -0.286 0.036
74 259274_at AT3G01220 ATHB20, homeobox protein 20, HB20, homeobox protein 20 -0.284 -0.005
75 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.282 0.032
76 251504_at AT3G59030 ATTT12, A. THALIANA TRANSPARENT TESTA, TT12, TRANSPARENT TESTA 12 -0.279 -0.029
77 251114_at AT5G01380 [Homeodomain-like superfamily protein] -0.278 0.018
78 267358_at AT2G39890 ATPROT1, PROLINE TRANSPORTER 1, PROT1, proline transporter 1 -0.278 -0.054
79 254807_at AT4G12700 unknown -0.274 0.017
80 246962_s_at AT5G24800 ATBZIP9, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, BZIP9, basic leucine zipper 9, BZO2H2, BASIC LEUCINE ZIPPER O2 HOMOLOG 2 -0.273 0.017
81 247597_at AT5G60860 AtRABA1f, RAB GTPase homolog A1F, RABA1f, RAB GTPase homolog A1F -0.264 -0.034
82 257825_at AT3G26700 [Protein kinase superfamily protein] -0.264 -0.038
83 244913_at ATMG00840 ORF121B -0.262 -0.063
84 255243_at AT4G05590 unknown -0.262 -0.021
85 249610_at AT5G37360 unknown -0.260 -0.040
86 245025_at ATCG00130 ATPF -0.259 -0.034
87 245444_at AT4G16740 ATTPS03, terpene synthase 03, TPS03, terpene synthase 03 -0.258 -0.061
88 260968_at AT1G12250 [Pentapeptide repeat-containing protein] -0.257 -0.065
89 249579_at AT5G37680 ARLA1A, ADP-ribosylation factor-like A1A, ATARLA1A, ADP-ribosylation factor-like A1A -0.256 -0.050
90 253768_at AT4G28550 [Ypt/Rab-GAP domain of gyp1p superfamily protein] -0.253 0.127
91 251671_at AT3G57210 unknown -0.252 -0.009
92 250812_at AT5G04900 NOL, NYC1-like -0.250 -0.058
93 249332_at AT5G40980 unknown -0.249 -0.112