4.0:Information of module
2hr continuous KNO3 ECR cell
In comparison with Mutant arf2-6 (IAA) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.449e-22
GO:0001101 response to acid chemical BP 1.962e-20
GO:0042221 response to chemical BP 2.503e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 7.184e-68
GO:0019684 photosynthesis, light reaction BP 3.650e-60
GO:0006091 generation of precursor metabolites and ... BP 2.419e-45
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 ECR cell		 Log2 signal ratio
Mutant arf2-6 (IAA)
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 1.040 0.106
2 257645_at AT3G25790 [myb-like transcription factor family protein] 0.814 -0.150
3 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.759 -0.307
4 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.740 0.233
5 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.694 -0.016
6 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.693 -0.146
7 246142_at AT5G19970 unknown 0.676 -0.098
8 253864_at AT4G27460 CBSX5, CBS domain containing protein 5 0.663 0.017
9 261791_at AT1G16170 unknown 0.612 -0.033
10 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.560 -0.010
11 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.554 -0.266
12 261487_at AT1G14340 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.543 -0.072
13 261410_at AT1G07610 MT1C, metallothionein 1C 0.533 -0.032
14 257720_at AT3G18450 [PLAC8 family protein] 0.529 -0.280
15 245677_at AT1G56660 unknown 0.514 -0.072
16 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.507 -0.105
17 247775_at AT5G58690 ATPLC5, PLC5, phosphatidylinositol-speciwc phospholipase C5 0.496 -0.043
18 257670_at AT3G20340 unknown 0.484 -0.105
19 247218_at AT5G65010 ASN2, asparagine synthetase 2 0.479 -0.080
20 246868_at AT5G26010 [Protein phosphatase 2C family protein] 0.467 -0.114
21 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.465 -0.072
22 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.461 -0.048
23 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.458 -0.011
24 253258_at AT4G34400 [AP2/B3-like transcriptional factor family protein] 0.446 -0.034
25 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.442 0.011
26 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.439 0.064
27 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.437 -0.001
28 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.427 0.092
29 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.425 -0.018
30 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.425 -0.038
31 248392_at AT5G52050 [MATE efflux family protein] 0.423 0.029
32 246216_at AT4G36380 ROT3, ROTUNDIFOLIA 3 0.421 -0.142
33 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.408 0.100
34 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 0.408 -0.047
35 257530_at AT3G03040 [F-box/RNI-like superfamily protein] 0.385 0.036
36 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.384 -0.028
37 265992_at AT2G24130 [Leucine-rich receptor-like protein kinase family protein] 0.380 -0.012
38 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.374 -0.171
39 247443_at AT5G62720 [Integral membrane HPP family protein] 0.371 -0.009
40 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.368 -0.052
41 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.364 0.099
42 262399_at AT1G49500 unknown 0.350 -0.052
43 259828_at AT1G72220 [RING/U-box superfamily protein] 0.349 -0.090
44 259015_at AT3G07350 unknown 0.348 -0.069
45 255435_at AT4G03280 PETC, photosynthetic electron transfer C, PGR1, PROTON GRADIENT REGULATION 1 -1.056 0.034
46 253009_at AT4G37930 SHM1, serine transhydroxymethyltransferase 1, SHMT1, SERINE HYDROXYMETHYLTRANSFERASE 1, STM, SERINE TRANSHYDROXYMETHYLTRANSFERASE -0.986 0.031
47 256527_at AT1G66100 [Plant thionin] -0.936 0.047
48 264545_at AT1G55670 PSAG, photosystem I subunit G -0.921 0.011
49 247320_at AT5G64040 PSAN -0.874 0.037
50 256168_at AT1G51805 [Leucine-rich repeat protein kinase family protein] -0.852 -0.003
51 251762_at AT3G55800 SBPASE, sedoheptulose-bisphosphatase -0.830 0.058
52 256309_at AT1G30380 PSAK, photosystem I subunit K -0.820 0.024
53 259727_at AT1G60950 ATFD2, FERREDOXIN 2, FD2, FED A -0.818 0.040
54 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] -0.804 0.070
55 261746_at AT1G08380 PSAO, photosystem I subunit O -0.767 0.023
56 266716_at AT2G46820 CURT1B, CURVATURE THYLAKOID 1B, PSAP, PSI-P, photosystem I P subunit, PTAC8, PLASTID TRANSCRIPTIONALLY ACTIVE 8, TMP14, THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA -0.765 0.057
57 255886_at AT1G20340 DRT112, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, PETE2, PLASTOCYANIN 2 -0.740 0.020
58 261518_at AT1G71695 [Peroxidase superfamily protein] -0.738 -0.006
59 263761_at AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 -0.727 0.012
60 254790_at AT4G12800 PSAL, photosystem I subunit l -0.701 -0.006
61 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.696 -0.015
62 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 -0.695 0.039
63 254398_at AT4G21280 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-1, PHOTOSYSTEM II SUBUNIT Q-1, PSBQA, photosystem II subunit QA -0.684 0.003
64 267635_at AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.677 0.011
65 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] -0.668 -0.010
66 254970_at AT4G10340 LHCB5, light harvesting complex of photosystem II 5 -0.664 0.032
67 248128_at AT5G54770 THI1, THI4, THIAMINE4, TZ, THIAZOLE REQUIRING -0.660 0.001
68 252462_at AT3G47250 unknown -0.647 -0.010
69 261197_at AT1G12900 GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 -0.642 -0.004
70 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 -0.640 0.030
71 262373_at AT1G73120 unknown -0.636 0.158
72 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.636 0.002
73 255572_at AT4G01050 TROL, thylakoid rhodanese-like -0.628 0.055
74 265998_at AT2G24270 ALDH11A3, aldehyde dehydrogenase 11A3 -0.611 0.160
75 251885_at AT3G54050 HCEF1, high cyclic electron flow 1 -0.607 0.030
76 267262_at AT2G22990 SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SNG1, sinapoylglucose 1 -0.603 0.057
77 245061_at AT2G39730 RCA, rubisco activase -0.603 0.006
78 253197_at AT4G35250 HCF244, high chlorophyll fluorescence phenotype 244 -0.602 0.036
79 252092_at AT3G51420 ATSSL4, STRICTOSIDINE SYNTHASE-LIKE 4, SSL4, strictosidine synthase-like 4 -0.595 0.084
80 264092_at AT1G79040 PSBR, photosystem II subunit R -0.594 -0.010
81 262557_at AT1G31330 PSAF, photosystem I subunit F -0.590 0.014
82 245195_at AT1G67740 PSBY, photosystem II BY, YCF32 -0.574 0.010
83 258993_at AT3G08940 LHCB4.2, light harvesting complex photosystem II -0.555 0.037
84 249482_at AT5G38980 unknown -0.555 -0.049
85 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.541 0.031
86 247073_at AT5G66570 MSP-1, MANGANESE-STABILIZING PROTEIN 1, OE33, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, OEE1, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OEE33, OXYGEN EVOLVING ENHANCER PROTEIN 33, PSBO-1, PS II OXYGEN-EVOLVING COMPLEX 1, PSBO1, PS II oxygen-evolving complex 1 -0.540 0.002
87 265287_at AT2G20260 PSAE-2, photosystem I subunit E-2 -0.534 -0.009