4.0:Information of module
2hr continuous KNO3 ECR cell
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.449e-22
GO:0001101 response to acid chemical BP 1.962e-20
GO:0042221 response to chemical BP 2.503e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015979 photosynthesis BP 7.184e-68
GO:0019684 photosynthesis, light reaction BP 3.650e-60
GO:0006091 generation of precursor metabolites and ... BP 2.419e-45
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 ECR cell		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 1.040 -0.192
2 257645_at AT3G25790 [myb-like transcription factor family protein] 0.814 0.030
3 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.759 -0.045
4 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.740 0.661
5 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.694 0.026
6 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.693 -0.062
7 246142_at AT5G19970 unknown 0.676 -0.725
8 253864_at AT4G27460 CBSX5, CBS domain containing protein 5 0.663 0.039
9 261791_at AT1G16170 unknown 0.612 -0.141
10 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.560 -0.154
11 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.554 0.232
12 261487_at AT1G14340 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.543 -0.019
13 261410_at AT1G07610 MT1C, metallothionein 1C 0.533 0.268
14 257720_at AT3G18450 [PLAC8 family protein] 0.529 -0.049
15 245677_at AT1G56660 unknown 0.514 0.026
16 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase 0.507 0.259
17 247775_at AT5G58690 ATPLC5, PLC5, phosphatidylinositol-speciwc phospholipase C5 0.496 -0.077
18 257670_at AT3G20340 unknown 0.484 0.400
19 247218_at AT5G65010 ASN2, asparagine synthetase 2 0.479 -0.336
20 246868_at AT5G26010 [Protein phosphatase 2C family protein] 0.467 -0.012
21 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.465 0.035
22 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.461 -0.107
23 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.458 -0.265
24 253258_at AT4G34400 [AP2/B3-like transcriptional factor family protein] 0.446 -0.147
25 260623_at AT1G08090 ACH1, ATNRT2.1, NITRATE TRANSPORTER 2.1, ATNRT2:1, nitrate transporter 2:1, LIN1, LATERAL ROOT INITIATION 1, NRT2, NITRATE TRANSPORTER 2, NRT2.1, NITRATE TRANSPORTER 2.1, NRT2:1, nitrate transporter 2:1, NRT2;1AT 0.442 0.028
26 259813_at AT1G49860 ATGSTF14, glutathione S-transferase (class phi) 14, GSTF14, glutathione S-transferase (class phi) 14 0.439 0.018
27 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.437 0.387
28 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.427 -0.237
29 249266_at AT5G41670 [6-phosphogluconate dehydrogenase family protein] 0.425 0.133
30 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.425 0.094
31 248392_at AT5G52050 [MATE efflux family protein] 0.423 0.100
32 246216_at AT4G36380 ROT3, ROTUNDIFOLIA 3 0.421 -0.020
33 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.408 0.170
34 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 0.408 0.181
35 257530_at AT3G03040 [F-box/RNI-like superfamily protein] 0.385 0.090
36 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.384 -0.074
37 265992_at AT2G24130 [Leucine-rich receptor-like protein kinase family protein] 0.380 0.033
38 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.374 -0.187
39 247443_at AT5G62720 [Integral membrane HPP family protein] 0.371 -0.002
40 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.368 0.111
41 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.364 -0.101
42 262399_at AT1G49500 unknown 0.350 -0.143
43 259828_at AT1G72220 [RING/U-box superfamily protein] 0.349 -0.109
44 259015_at AT3G07350 unknown 0.348 -0.071
45 255435_at AT4G03280 PETC, photosynthetic electron transfer C, PGR1, PROTON GRADIENT REGULATION 1 -1.056 -0.348
46 253009_at AT4G37930 SHM1, serine transhydroxymethyltransferase 1, SHMT1, SERINE HYDROXYMETHYLTRANSFERASE 1, STM, SERINE TRANSHYDROXYMETHYLTRANSFERASE -0.986 -0.596
47 256527_at AT1G66100 [Plant thionin] -0.936 -1.032
48 264545_at AT1G55670 PSAG, photosystem I subunit G -0.921 -0.275
49 247320_at AT5G64040 PSAN -0.874 -0.518
50 256168_at AT1G51805 [Leucine-rich repeat protein kinase family protein] -0.852 -0.506
51 251762_at AT3G55800 SBPASE, sedoheptulose-bisphosphatase -0.830 -0.629
52 256309_at AT1G30380 PSAK, photosystem I subunit K -0.820 -0.429
53 259727_at AT1G60950 ATFD2, FERREDOXIN 2, FD2, FED A -0.818 -0.249
54 252463_at AT3G47070 [LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope] -0.804 -0.592
55 261746_at AT1G08380 PSAO, photosystem I subunit O -0.767 -0.448
56 266716_at AT2G46820 CURT1B, CURVATURE THYLAKOID 1B, PSAP, PSI-P, photosystem I P subunit, PTAC8, PLASTID TRANSCRIPTIONALLY ACTIVE 8, TMP14, THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA -0.765 -0.437
57 255886_at AT1G20340 DRT112, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, PETE2, PLASTOCYANIN 2 -0.740 -0.332
58 261518_at AT1G71695 [Peroxidase superfamily protein] -0.738 -0.127
59 263761_at AT2G21330 AtFBA1, FBA1, fructose-bisphosphate aldolase 1 -0.727 -0.819
60 254790_at AT4G12800 PSAL, photosystem I subunit l -0.701 -0.347
61 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 -0.696 -1.015
62 252929_at AT4G38970 AtFBA2, FBA2, fructose-bisphosphate aldolase 2 -0.695 -0.527
63 254398_at AT4G21280 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-1, PHOTOSYSTEM II SUBUNIT Q-1, PSBQA, photosystem II subunit QA -0.684 -0.570
64 267635_at AT2G42220 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.677 -0.643
65 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] -0.668 0.037
66 254970_at AT4G10340 LHCB5, light harvesting complex of photosystem II 5 -0.664 -0.279
67 248128_at AT5G54770 THI1, THI4, THIAMINE4, TZ, THIAZOLE REQUIRING -0.660 -0.321
68 252462_at AT3G47250 unknown -0.647 -0.113
69 261197_at AT1G12900 GAPA-2, glyceraldehyde 3-phosphate dehydrogenase A subunit 2 -0.642 -0.496
70 252430_at AT3G47470 CAB4, LHCA4, light-harvesting chlorophyll-protein complex I subunit A4 -0.640 -0.358
71 262373_at AT1G73120 unknown -0.636 0.252
72 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.636 -0.360
73 255572_at AT4G01050 TROL, thylakoid rhodanese-like -0.628 -0.505
74 265998_at AT2G24270 ALDH11A3, aldehyde dehydrogenase 11A3 -0.611 -0.285
75 251885_at AT3G54050 HCEF1, high cyclic electron flow 1 -0.607 -0.726
76 267262_at AT2G22990 SCPL8, SERINE CARBOXYPEPTIDASE-LIKE 8, SNG1, sinapoylglucose 1 -0.603 -0.436
77 245061_at AT2G39730 RCA, rubisco activase -0.603 -0.342
78 253197_at AT4G35250 HCF244, high chlorophyll fluorescence phenotype 244 -0.602 -0.650
79 252092_at AT3G51420 ATSSL4, STRICTOSIDINE SYNTHASE-LIKE 4, SSL4, strictosidine synthase-like 4 -0.595 -0.321
80 264092_at AT1G79040 PSBR, photosystem II subunit R -0.594 -0.224
81 262557_at AT1G31330 PSAF, photosystem I subunit F -0.590 -0.273
82 245195_at AT1G67740 PSBY, photosystem II BY, YCF32 -0.574 -0.335
83 258993_at AT3G08940 LHCB4.2, light harvesting complex photosystem II -0.555 -0.354
84 249482_at AT5G38980 unknown -0.555 -0.270
85 265033_at AT1G61520 LHCA3, photosystem I light harvesting complex gene 3 -0.541 -0.217
86 247073_at AT5G66570 MSP-1, MANGANESE-STABILIZING PROTEIN 1, OE33, OXYGEN EVOLVING COMPLEX 33 KILODALTON PROTEIN, OEE1, 33 KDA OXYGEN EVOLVING POLYPEPTIDE 1, OEE33, OXYGEN EVOLVING ENHANCER PROTEIN 33, PSBO-1, PS II OXYGEN-EVOLVING COMPLEX 1, PSBO1, PS II oxygen-evolving complex 1 -0.540 -0.332
87 265287_at AT2G20260 PSAE-2, photosystem I subunit E-2 -0.534 -0.332