4.0:Information of module
2hr transitory KNO3 EPR cell
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006807 nitrogen compound metabolic process BP 2.683e-03
GO:1901360 organic cyclic compound metabolic proces... BP 3.805e-03
GO:0006725 cellular aromatic compound metabolic pro... BP 4.119e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010101 post-embryonic root morphogenesis BP 3.853e-04
GO:0010102 lateral root morphogenesis BP 3.853e-04
GO:0048527 lateral root development BP 1.017e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 EPR cell		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 13 hrs Taking 70 mm of Stump (4dpg)
1 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.548 -0.182
2 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.523 0.251
3 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier 0.520 -0.212
4 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.503 0.452
5 260522_x_at AT2G41730 unknown 0.482 -0.379
6 263114_at AT1G03130 PSAD-2, photosystem I subunit D-2 0.444 0.267
7 253042_at AT4G37550 [Acetamidase/Formamidase family protein] 0.441 -0.013
8 256703_at AT3G30260 AGL79, AGAMOUS-like 79 0.433 0.038
9 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.420 1.618
10 262399_at AT1G49500 unknown 0.415 1.282
11 258671_at AT3G08560 VHA-E2, vacuolar H+-ATPase subunit E isoform 2 0.412 0.705
12 250472_at AT5G10210 unknown 0.406 -0.529
13 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.397 -0.167
14 253653_at AT4G30050 unknown 0.382 -0.614
15 263486_at AT2G22200 [Integrase-type DNA-binding superfamily protein] 0.368 -0.735
16 265784_at AT2G07280 unknown 0.346 -0.864
17 249377_at AT5G40690 unknown 0.345 0.315
18 250201_at AT5G14230 unknown 0.344 0.899
19 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 0.343 -0.051
20 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.332 -0.017
21 248925_at AT5G45910 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.330 -0.324
22 265984_at AT2G24210 TPS10, terpene synthase 10 0.327 -1.083
23 253939_at AT4G26930 AtMYB97, myb domain protein 97, MYB97, myb domain protein 97 0.325 -1.152
24 245690_at AT5G04230 ATPAL3, PAL3, phenyl alanine ammonia-lyase 3 0.325 -0.246
25 249896_at AT5G22530 unknown 0.323 -0.321
26 261737_at AT1G47885 [Ribonuclease inhibitor] 0.319 -0.725
27 248289_at AT5G52880 [F-box family protein] 0.311 -0.310
28 253990_at AT4G26160 ACHT1, atypical CYS HIS rich thioredoxin 1 0.301 -0.372
29 249415_at AT5G39660 CDF2, cycling DOF factor 2 0.299 0.501
30 253322_at AT4G33980 unknown 0.293 -1.078
31 264527_at AT1G30760 [FAD-binding Berberine family protein] 0.293 0.020
32 265602_at AT2G14380 [gypsy-like retrotransposon family, has a 1.6e-123 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.291 -0.011
33 259976_at AT1G76560 CP12-3, CP12 domain-containing protein 3 0.289 1.018
34 257851_at AT3G12940 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.288 0.412
35 258959_at AT3G10600 CAT7, cationic amino acid transporter 7 0.286 0.186
36 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.278 1.220
37 253305_at AT4G33666 unknown 0.276 -0.594
38 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.275 0.230
39 257305_at AT3G30250 unknown 0.274 -0.665
40 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 0.264 0.729
41 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 0.255 0.177
42 255125_at AT4G08250 [GRAS family transcription factor] 0.252 -0.552
43 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B 0.252 0.319
44 259379_at AT3G16350 [Homeodomain-like superfamily protein] 0.251 0.832
45 254133_at AT4G24810 [Protein kinase superfamily protein] 0.249 -0.599
46 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.249 -0.886
47 259213_at AT3G09010 [Protein kinase superfamily protein] 0.247 -0.211
48 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.245 -0.793
49 262425_at AT1G47660 unknown 0.245 0.352
50 256043_at AT1G07210 [Ribosomal protein S18] 0.243 0.381
51 263319_at AT2G47160 AtBOR1, BOR1, REQUIRES HIGH BORON 1 0.242 -0.267
52 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.242 -0.522
53 258974_at AT3G01890 [SWIB/MDM2 domain superfamily protein] 0.242 -0.229
54 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.241 -0.407
55 263642_at AT2G04750 [Actin binding Calponin homology (CH) domain-containing protein] 0.235 -0.800
56 244974_at ATCG00700 PSBN, photosystem II reaction center protein N 0.234 -0.133
57 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.446 -0.748
58 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.396 0.759
59 253227_at AT4G35030 [Protein kinase superfamily protein] -0.396 -1.122
60 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.389 0.510
61 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.378 -0.862
62 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.373 -0.919
63 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.370 0.421
64 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor -0.353 0.334
65 257951_at AT3G21700 ATSGP2, SGP2 -0.351 -0.893
66 253650_at AT4G30020 [PA-domain containing subtilase family protein] -0.350 0.220
67 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.348 -0.158
68 263677_at AT1G04520 PDLP2, plasmodesmata-located protein 2 -0.346 0.374
69 260395_at AT1G69780 ATHB13 -0.337 -0.197
70 258502_at AT3G02490 [Pentatricopeptide repeat (PPR) superfamily protein] -0.336 -0.254
71 248891_at AT5G46280 MCM3, MINICHROMOSOME MAINTENANCE 3 -0.333 0.574
72 253219_at AT4G34990 AtMYB32, myb domain protein 32, MYB32, myb domain protein 32 -0.332 -0.675
73 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -0.330 -1.113
74 258134_at AT3G24530 [AAA-type ATPase family protein / ankyrin repeat family protein] -0.330 -0.453
75 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.326 -0.013
76 250395_at AT5G10950 [Tudor/PWWP/MBT superfamily protein] -0.317 -0.532
77 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.317 0.638
78 263073_at AT2G17500 [Auxin efflux carrier family protein] -0.317 -0.292
79 265439_at AT2G21045 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.311 0.482
80 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.308 0.162
81 246282_at AT4G36580 [AAA-type ATPase family protein] -0.307 0.636
82 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 -0.298 -0.355
83 258748_at AT3G05930 GLP8, germin-like protein 8 -0.286 -0.221
84 246249_at AT4G36680 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.275 0.415
85 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 -0.270 0.013
86 260462_at AT1G10970 ATZIP4, ZIP4, zinc transporter 4 precursor -0.269 0.259
87 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.263 0.137
88 260563_at AT2G43840 UGT74F1, UDP-glycosyltransferase 74 F1 -0.259 -1.014
89 256712_at AT2G34020 [Calcium-binding EF-hand family protein] -0.255 0.136
90 262411_at AT1G34640 [peptidases] -0.253 0.764
91 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.249 -0.335
92 247059_at AT5G66690 UGT72E2 -0.248 -0.188
93 254281_at AT4G22840 [Sodium Bile acid symporter family] -0.244 0.553
94 250679_at AT5G06550 JMJ22, Jumonji domain-containing protein 22 -0.243 0.340
95 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.238 0.762
96 267632_at AT2G42160 BRIZ1, BRAP2 RING ZnF UBP domain-containing protein 1 -0.234 -0.162
97 256510_at AT1G33360 [ATP-dependent Clp protease] -0.234 -0.424
98 260639_at AT1G53180 unknown -0.232 1.153
99 256935_at AT3G22570 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.231 0.064
100 259162_at AT3G01640 ATGLCAK, ARABIDOPSIS THALIANA GLUCURONOKINASE, GLCAK, glucuronokinase G -0.230 -0.132
101 259849_at AT1G72190 [D-isomer specific 2-hydroxyacid dehydrogenase family protein] -0.227 0.715
102 261220_at AT1G19970 [ER lumen protein retaining receptor family protein] -0.226 0.645
103 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -0.226 0.438
104 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -0.223 -0.212
105 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 -0.223 -0.246
106 266136_at AT2G45060 [Uncharacterised conserved protein UCP022280] -0.222 -0.228
107 259351_at AT3G05150 [Major facilitator superfamily protein] -0.220 0.373
108 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.217 -0.572
109 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.210 -0.442
110 253605_at AT4G30990 [ARM repeat superfamily protein] -0.209 -0.808
111 245338_at AT4G16442 [Uncharacterised protein family (UPF0497)] -0.207 -0.135