4.0:Information of module
2hr transitory KNO3 EPR cell
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006807 nitrogen compound metabolic process BP 2.683e-03
GO:1901360 organic cyclic compound metabolic proces... BP 3.805e-03
GO:0006725 cellular aromatic compound metabolic pro... BP 4.119e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010101 post-embryonic root morphogenesis BP 3.853e-04
GO:0010102 lateral root morphogenesis BP 3.853e-04
GO:0048527 lateral root development BP 1.017e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 EPR cell		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.548 -0.137
2 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 0.523 -0.108
3 258629_at AT3G02850 SKOR, STELAR K+ outward rectifier 0.520 -0.155
4 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 0.503 -0.019
5 260522_x_at AT2G41730 unknown 0.482 0.225
6 263114_at AT1G03130 PSAD-2, photosystem I subunit D-2 0.444 0.003
7 253042_at AT4G37550 [Acetamidase/Formamidase family protein] 0.441 0.390
8 256703_at AT3G30260 AGL79, AGAMOUS-like 79 0.433 -0.018
9 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.420 0.014
10 262399_at AT1G49500 unknown 0.415 -0.062
11 258671_at AT3G08560 VHA-E2, vacuolar H+-ATPase subunit E isoform 2 0.412 0.057
12 250472_at AT5G10210 unknown 0.406 0.007
13 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] 0.397 0.035
14 253653_at AT4G30050 unknown 0.382 -0.018
15 263486_at AT2G22200 [Integrase-type DNA-binding superfamily protein] 0.368 -0.032
16 265784_at AT2G07280 unknown 0.346 0.048
17 249377_at AT5G40690 unknown 0.345 -0.078
18 250201_at AT5G14230 unknown 0.344 0.020
19 259549_at AT1G35290 ALT1, acyl-lipid thioesterase 1 0.343 0.127
20 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.332 0.210
21 248925_at AT5G45910 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.330 0.125
22 265984_at AT2G24210 TPS10, terpene synthase 10 0.327 0.077
23 253939_at AT4G26930 AtMYB97, myb domain protein 97, MYB97, myb domain protein 97 0.325 -0.086
24 245690_at AT5G04230 ATPAL3, PAL3, phenyl alanine ammonia-lyase 3 0.325 0.208
25 249896_at AT5G22530 unknown 0.323 0.035
26 261737_at AT1G47885 [Ribonuclease inhibitor] 0.319 -0.165
27 248289_at AT5G52880 [F-box family protein] 0.311 0.022
28 253990_at AT4G26160 ACHT1, atypical CYS HIS rich thioredoxin 1 0.301 -0.079
29 249415_at AT5G39660 CDF2, cycling DOF factor 2 0.299 -0.056
30 253322_at AT4G33980 unknown 0.293 0.159
31 264527_at AT1G30760 [FAD-binding Berberine family protein] 0.293 -0.079
32 265602_at AT2G14380 [gypsy-like retrotransposon family, has a 1.6e-123 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] 0.291 -0.028
33 259976_at AT1G76560 CP12-3, CP12 domain-containing protein 3 0.289 -0.004
34 257851_at AT3G12940 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.288 0.060
35 258959_at AT3G10600 CAT7, cationic amino acid transporter 7 0.286 -0.183
36 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.278 -0.042
37 253305_at AT4G33666 unknown 0.276 -0.103
38 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.275 0.328
39 257305_at AT3G30250 unknown 0.274 -0.069
40 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 0.264 -0.095
41 245925_at AT5G28770 AtbZIP63, Arabidopsis thaliana basic leucine zipper 63, BZO2H3 0.255 -0.086
42 255125_at AT4G08250 [GRAS family transcription factor] 0.252 -0.042
43 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B 0.252 -0.014
44 259379_at AT3G16350 [Homeodomain-like superfamily protein] 0.251 -0.470
45 254133_at AT4G24810 [Protein kinase superfamily protein] 0.249 -0.028
46 245505_at AT4G15690 [Thioredoxin superfamily protein] 0.249 0.124
47 259213_at AT3G09010 [Protein kinase superfamily protein] 0.247 -0.009
48 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.245 -0.059
49 262425_at AT1G47660 unknown 0.245 0.162
50 256043_at AT1G07210 [Ribosomal protein S18] 0.243 0.035
51 263319_at AT2G47160 AtBOR1, BOR1, REQUIRES HIGH BORON 1 0.242 0.042
52 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.242 0.076
53 258974_at AT3G01890 [SWIB/MDM2 domain superfamily protein] 0.242 0.196
54 263809_at AT2G04570 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.241 0.048
55 263642_at AT2G04750 [Actin binding Calponin homology (CH) domain-containing protein] 0.235 -0.152
56 244974_at ATCG00700 PSBN, photosystem II reaction center protein N 0.234 0.043
57 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.446 -0.055
58 248923_at AT5G45940 AtNUDT11, Arabidopsis thaliana nudix hydrolase homolog 11, AtNUDX11, Arabidopsis thaliana nudix hydrolase homolog 11, NUDT11, nudix hydrolase homolog 11, NUDX11, nudix hydrolase homolog 11 -0.396 0.043
59 253227_at AT4G35030 [Protein kinase superfamily protein] -0.396 0.029
60 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.389 0.077
61 259888_at AT1G76350 NLP5, NIN-like protein 5 -0.378 -0.131
62 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.373 0.002
63 263406_at AT2G04160 AIR3, AUXIN-INDUCED IN ROOT CULTURES 3 -0.370 0.061
64 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor -0.353 0.177
65 257951_at AT3G21700 ATSGP2, SGP2 -0.351 0.046
66 253650_at AT4G30020 [PA-domain containing subtilase family protein] -0.350 0.216
67 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] -0.348 -0.033
68 263677_at AT1G04520 PDLP2, plasmodesmata-located protein 2 -0.346 0.119
69 260395_at AT1G69780 ATHB13 -0.337 -0.148
70 258502_at AT3G02490 [Pentatricopeptide repeat (PPR) superfamily protein] -0.336 0.109
71 248891_at AT5G46280 MCM3, MINICHROMOSOME MAINTENANCE 3 -0.333 0.296
72 253219_at AT4G34990 AtMYB32, myb domain protein 32, MYB32, myb domain protein 32 -0.332 -0.099
73 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -0.330 -0.102
74 258134_at AT3G24530 [AAA-type ATPase family protein / ankyrin repeat family protein] -0.330 0.051
75 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.326 -0.048
76 250395_at AT5G10950 [Tudor/PWWP/MBT superfamily protein] -0.317 -0.043
77 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 -0.317 0.055
78 263073_at AT2G17500 [Auxin efflux carrier family protein] -0.317 -0.096
79 265439_at AT2G21045 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.311 0.076
80 248970_at AT5G45380 ATDUR3, DUR3, DEGRADATION OF UREA 3 -0.308 0.041
81 246282_at AT4G36580 [AAA-type ATPase family protein] -0.307 0.054
82 257540_at AT3G21520 AtDMP1, Arabidopsis thaliana DUF679 domain membrane protein 1, DMP1, DUF679 domain membrane protein 1 -0.298 -0.118
83 258748_at AT3G05930 GLP8, germin-like protein 8 -0.286 0.100
84 246249_at AT4G36680 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.275 -0.099
85 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 -0.270 -0.114
86 260462_at AT1G10970 ATZIP4, ZIP4, zinc transporter 4 precursor -0.269 -0.029
87 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 -0.263 0.090
88 260563_at AT2G43840 UGT74F1, UDP-glycosyltransferase 74 F1 -0.259 -0.078
89 256712_at AT2G34020 [Calcium-binding EF-hand family protein] -0.255 0.128
90 262411_at AT1G34640 [peptidases] -0.253 0.068
91 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.249 0.220
92 247059_at AT5G66690 UGT72E2 -0.248 -0.002
93 254281_at AT4G22840 [Sodium Bile acid symporter family] -0.244 0.079
94 250679_at AT5G06550 JMJ22, Jumonji domain-containing protein 22 -0.243 -0.083
95 254971_at AT4G10380 AtNIP5;1, NIP5;1, NOD26-like intrinsic protein 5;1, NLM6, NOD26-LIKE MIP 6, NLM8, NOD26-LIKE MIP 8 -0.238 0.086
96 267632_at AT2G42160 BRIZ1, BRAP2 RING ZnF UBP domain-containing protein 1 -0.234 0.038
97 256510_at AT1G33360 [ATP-dependent Clp protease] -0.234 -0.016
98 260639_at AT1G53180 unknown -0.232 0.019
99 256935_at AT3G22570 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.231 0.028
100 259162_at AT3G01640 ATGLCAK, ARABIDOPSIS THALIANA GLUCURONOKINASE, GLCAK, glucuronokinase G -0.230 0.040
101 259849_at AT1G72190 [D-isomer specific 2-hydroxyacid dehydrogenase family protein] -0.227 0.008
102 261220_at AT1G19970 [ER lumen protein retaining receptor family protein] -0.226 -0.057
103 248183_at AT5G54040 [Cysteine/Histidine-rich C1 domain family protein] -0.226 0.026
104 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 -0.223 0.274
105 266421_at AT2G38540 ATLTP1, ARABIDOPSIS THALIANA LIPID TRANSFER PROTEIN 1, LP1, lipid transfer protein 1, LTP1, LIPID TRANSFER PROTEIN 1 -0.223 0.019
106 266136_at AT2G45060 [Uncharacterised conserved protein UCP022280] -0.222 0.002
107 259351_at AT3G05150 [Major facilitator superfamily protein] -0.220 0.071
108 253065_at AT4G37740 AtGRF2, growth-regulating factor 2, GRF2, growth-regulating factor 2 -0.217 0.518
109 260930_at AT1G02620 [Ras-related small GTP-binding family protein] -0.210 0.095
110 253605_at AT4G30990 [ARM repeat superfamily protein] -0.209 -0.062
111 245338_at AT4G16442 [Uncharacterised protein family (UPF0497)] -0.207 -0.001