4.0:Information of module
root longitudinal zone-4 NaCl
In comparison with Dark 2day wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 3.254e-21
GO:0009719 response to endogenous stimulus BP 1.827e-20
GO:0001101 response to acid chemical BP 1.280e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 1.098e-18
GO:0010053 root epidermal cell differentiation BP 5.563e-18
GO:0090627 plant epidermal cell differentiation BP 1.479e-17
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-4 NaCl		 Log2 signal ratio
Dark 2day wt
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.433 2.849
2 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 1.107 3.067
3 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 1.092 -0.020
4 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.025 0.897
5 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.921 2.419
6 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.877 3.355
7 252073_at AT3G51750 unknown 0.866 -2.512
8 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.822 5.829
9 249771_at AT5G24080 [Protein kinase superfamily protein] 0.798 3.553
10 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.791 6.534
11 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.780 9.395
12 248205_at AT5G54300 unknown 0.744 0.680
13 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 0.732 1.829
14 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.721 -0.020
15 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.656 1.124
16 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.646 2.159
17 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] 0.645 5.629
18 256285_at AT3G12510 [MADS-box family protein] 0.636 0.567
19 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.625 1.321
20 260357_at AT1G69260 AFP1, ABI five binding protein 0.624 1.370
21 256548_at AT3G14770 AtSWEET2, SWEET2 0.619 -1.194
22 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.608 -0.020
23 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.601 0.427
24 253182_at AT4G35190 LOG5, LONELY GUY 5 0.595 -0.937
25 265024_at AT1G24600 unknown 0.565 1.912
26 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.558 9.929
27 247061_at AT5G66780 unknown 0.557 0.895
28 260875_at AT1G21410 SKP2A 0.553 1.893
29 254634_at AT4G18650 [transcription factor-related] 0.534 -0.020
30 265481_at AT2G15960 unknown 0.534 6.481
31 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.506 1.683
32 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.500 2.228
33 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 0.497 1.617
34 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 0.496 3.486
35 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.490 3.219
36 251916_at AT3G53960 [Major facilitator superfamily protein] 0.480 0.123
37 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] 0.469 -0.832
38 248392_at AT5G52050 [MATE efflux family protein] 0.459 -1.423
39 266143_at AT2G38905 [Low temperature and salt responsive protein family] 0.459 -0.020
40 253997_at AT4G26090 RPS2, RESISTANT TO P. SYRINGAE 2 0.455 0.621
41 250158_at AT5G15190 unknown 0.445 4.102
42 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.444 3.430
43 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 0.438 -1.629
44 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 0.437 1.299
45 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.431 -0.020
46 262061_at AT1G80110 ATPP2-B11, phloem protein 2-B11, PP2-B11, phloem protein 2-B11 0.410 2.279
47 259922_at AT1G72770 AtHAB1, HAB1, HYPERSENSITIVE TO ABA1 0.406 1.540
48 256114_at AT1G16850 unknown 0.398 6.508
49 246582_at AT1G31750 [proline-rich family protein] 0.385 0.669
50 252419_at AT3G47510 unknown 0.383 -0.208
51 252210_at AT3G50410 OBP1, OBF binding protein 1 0.382 -1.126
52 264580_at AT1G05340 unknown 0.380 4.337
53 256296_at AT1G69480 [EXS (ERD1/XPR1/SYG1) family protein] 0.367 1.953
54 247186_at AT5G65470 [O-fucosyltransferase family protein] 0.360 -1.248
55 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.357 0.716
56 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.352 2.708
57 264957_at AT1G77000 ATSKP2;2, ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, SKP2B 0.351 5.283
58 248464_at AT5G51160 [Ankyrin repeat family protein] 0.347 1.444
59 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.346 4.317
60 263566_at AT2G15340 [glycine-rich protein] 0.343 -0.020
61 254188_at AT4G23920 ATUGE2, UDP-GLC 4-EPIMERASE 2, UGE2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 0.341 0.160
62 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.337 1.288
63 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 0.334 0.221
64 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.332 2.765
65 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.329 3.214
66 250053_at AT5G17850 [Sodium/calcium exchanger family protein] 0.327 3.431
67 253996_at AT4G26110 ATNAP1;1, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, NAP1;1, nucleosome assembly protein1;1 0.327 0.394
68 260276_at AT1G80450 [VQ motif-containing protein] 0.326 1.233
69 253425_at AT4G32190 [Myosin heavy chain-related protein] 0.325 -1.559
70 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.324 -1.589
71 266555_at AT2G46270 GBF3, G-box binding factor 3 0.324 2.842
72 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.936 -0.020
73 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.852 -0.937
74 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.805 -0.020
75 259064_at AT3G07490 AGD11, ARF-GAP domain 11, AtCML3, CML3, calmodulin-like 3 -0.717 -0.020
76 262564_at AT1G34330 [pseudogene] -0.715 -0.020
77 251410_at AT3G60280 UCC3, uclacyanin 3 -0.660 -0.020
78 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.646 -4.223
79 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 -0.634 -0.020
80 264391_at AT1G11920 [Pectin lyase-like superfamily protein] -0.600 -0.020
81 259960_at AT1G53710 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.583 0.230
82 258832_at AT3G07070 [Protein kinase superfamily protein] -0.563 0.510
83 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.515 -0.020
84 266546_at AT2G35270 AHL21, AT-hook motif nuclear localized protein 21, GIK, GIANT KILLER -0.513 -0.020
85 252510_at AT3G46270 [receptor protein kinase-related] -0.500 -0.020
86 252596_at AT3G45330 LecRK-I.1, L-type lectin receptor kinase I.1 -0.489 -2.392
87 261550_at AT1G63450 RHS8, root hair specific 8, XUT1, XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 -0.484 -0.020
88 246024_at AT5G21130 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.472 -0.020
89 245636_at AT1G25240 [ENTH/VHS/GAT family protein] -0.472 -0.020
90 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 -0.469 -3.203
91 260804_at AT1G78410 [VQ motif-containing protein] -0.465 -2.313
92 267622_at AT2G39690 unknown -0.463 -0.885
93 251317_at AT3G61490 [Pectin lyase-like superfamily protein] -0.455 0.804
94 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.454 -0.020
95 259195_at AT3G01730 unknown -0.448 -0.020
96 249934_at AT5G22410 RHS18, root hair specific 18 -0.446 -0.020
97 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.441 -0.020
98 266785_at AT2G28970 [Leucine-rich repeat protein kinase family protein] -0.441 4.829
99 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.418 -0.020
100 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] -0.415 -0.020
101 254749_at AT4G13130 [Cysteine/Histidine-rich C1 domain family protein] -0.414 0.898
102 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] -0.408 -0.339
103 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.407 -2.279
104 265038_at AT1G03920 [Protein kinase family protein] -0.406 -3.725
105 267133_at AT2G23440 unknown -0.401 -0.020
106 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.401 -0.020
107 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.399 1.258
108 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.392 -1.827
109 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 -0.391 -4.606
110 256626_at AT3G20015 [Eukaryotic aspartyl protease family protein] -0.390 -0.765
111 256529_at AT1G33260 [Protein kinase superfamily protein] -0.378 -4.374
112 256769_at AT3G13690 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.374 -0.908
113 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 -0.369 -0.020
114 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.364 -0.020
115 251183_at AT3G62630 unknown -0.364 -3.220
116 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.364 -1.383
117 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.363 -4.261
118 262353_at AT1G64210 [Leucine-rich repeat protein kinase family protein] -0.362 0.510
119 245584_at AT4G14940 AO1, amine oxidase 1, ATAO1, amine oxidase 1 -0.349 -4.087
120 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.347 -3.996
121 247581_at AT5G61350 [Protein kinase superfamily protein] -0.344 -3.963
122 254431_at AT4G20840 [FAD-binding Berberine family protein] -0.344 -1.609
123 245036_at AT2G26410 Iqd4, IQ-domain 4 -0.342 -0.020
124 256189_at AT1G30140 unknown -0.337 -0.020
125 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 -0.327 -2.389
126 263737_at AT1G60010 unknown -0.322 0.998
127 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.319 -3.453
128 258468_at AT3G06070 unknown -0.317 -2.197
129 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.317 0.104
130 260320_at AT1G63930 ROH1, from the Czech 'roh' meaning 'corner' -0.310 -2.151
131 248077_at AT5G55770 [Cysteine/Histidine-rich C1 domain family protein] -0.306 -0.020
132 246093_at AT5G20550 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.304 -0.020
133 253692_at AT4G29720 ATPAO5, polyamine oxidase 5, PAO5, polyamine oxidase 5 -0.298 -0.692
134 266083_at AT2G37820 [Cysteine/Histidine-rich C1 domain family protein] -0.293 -0.021
135 263575_at AT2G17070 unknown -0.289 -0.020
136 259098_at AT3G04790 EMB3119, EMBRYO DEFECTIVE 3119 -0.283 -3.411
137 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 -0.283 -0.020
138 246402_at AT1G57570 [Mannose-binding lectin superfamily protein] -0.280 1.051
139 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.279 -3.002
140 255606_at AT4G01110 unknown -0.276 -0.865
141 266644_at AT2G29660 [zinc finger (C2H2 type) family protein] -0.273 2.580
142 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.273 0.786