4.0:Information of module
root longitudinal zone-4 NaCl
In comparison with Dark 3day wt help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 3.254e-21
GO:0009719 response to endogenous stimulus BP 1.827e-20
GO:0001101 response to acid chemical BP 1.280e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 1.098e-18
GO:0010053 root epidermal cell differentiation BP 5.563e-18
GO:0090627 plant epidermal cell differentiation BP 1.479e-17
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root longitudinal zone-4 NaCl		 Log2 signal ratio
Dark 3day wt
1 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 1.433 5.207
2 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 1.107 3.392
3 258325_at AT3G22830 AT-HSFA6B, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, HSFA6B, heat shock transcription factor A6B 1.092 3.305
4 258498_at AT3G02480 [Late embryogenesis abundant protein (LEA) family protein] 1.025 3.300
5 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.921 3.964
6 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.877 3.714
7 252073_at AT3G51750 unknown 0.866 -1.735
8 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.822 6.533
9 249771_at AT5G24080 [Protein kinase superfamily protein] 0.798 2.092
10 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.791 7.126
11 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.780 11.018
12 248205_at AT5G54300 unknown 0.744 1.142
13 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 0.732 0.481
14 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.721 0.481
15 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.656 2.671
16 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.646 3.941
17 267080_at AT2G41190 [Transmembrane amino acid transporter family protein] 0.645 6.728
18 256285_at AT3G12510 [MADS-box family protein] 0.636 1.263
19 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.625 2.721
20 260357_at AT1G69260 AFP1, ABI five binding protein 0.624 1.850
21 256548_at AT3G14770 AtSWEET2, SWEET2 0.619 -0.946
22 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.608 -0.049
23 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.601 1.629
24 253182_at AT4G35190 LOG5, LONELY GUY 5 0.595 -0.966
25 265024_at AT1G24600 unknown 0.565 3.437
26 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.558 11.217
27 247061_at AT5G66780 unknown 0.557 2.499
28 260875_at AT1G21410 SKP2A 0.553 2.199
29 254634_at AT4G18650 [transcription factor-related] 0.534 -0.049
30 265481_at AT2G15960 unknown 0.534 6.562
31 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.506 1.699
32 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.500 2.880
33 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 0.497 2.445
34 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 0.496 3.603
35 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.490 3.600
36 251916_at AT3G53960 [Major facilitator superfamily protein] 0.480 0.050
37 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] 0.469 -0.361
38 248392_at AT5G52050 [MATE efflux family protein] 0.459 -1.558
39 266143_at AT2G38905 [Low temperature and salt responsive protein family] 0.459 -0.049
40 253997_at AT4G26090 RPS2, RESISTANT TO P. SYRINGAE 2 0.455 0.819
41 250158_at AT5G15190 unknown 0.445 6.626
42 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.444 3.216
43 250859_at AT5G04660 CYP77A4, cytochrome P450, family 77, subfamily A, polypeptide 4 0.438 -2.327
44 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 0.437 2.123
45 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.431 2.597
46 262061_at AT1G80110 ATPP2-B11, phloem protein 2-B11, PP2-B11, phloem protein 2-B11 0.410 3.287
47 259922_at AT1G72770 AtHAB1, HAB1, HYPERSENSITIVE TO ABA1 0.406 2.166
48 256114_at AT1G16850 unknown 0.398 7.753
49 246582_at AT1G31750 [proline-rich family protein] 0.385 0.080
50 252419_at AT3G47510 unknown 0.383 -1.207
51 252210_at AT3G50410 OBP1, OBF binding protein 1 0.382 -0.777
52 264580_at AT1G05340 unknown 0.380 5.373
53 256296_at AT1G69480 [EXS (ERD1/XPR1/SYG1) family protein] 0.367 2.895
54 247186_at AT5G65470 [O-fucosyltransferase family protein] 0.360 -1.077
55 251946_at AT3G53540 TRM19, TON1 Recruiting Motif 19 0.357 0.661
56 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.352 3.701
57 264957_at AT1G77000 ATSKP2;2, ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, SKP2B 0.351 5.582
58 248464_at AT5G51160 [Ankyrin repeat family protein] 0.347 0.481
59 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 0.346 4.379
60 263566_at AT2G15340 [glycine-rich protein] 0.343 -0.049
61 254188_at AT4G23920 ATUGE2, UDP-GLC 4-EPIMERASE 2, UGE2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 0.341 0.993
62 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] 0.337 2.219
63 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 0.334 0.639
64 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 0.332 3.223
65 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.329 3.881
66 250053_at AT5G17850 [Sodium/calcium exchanger family protein] 0.327 3.835
67 253996_at AT4G26110 ATNAP1;1, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, NAP1;1, nucleosome assembly protein1;1 0.327 0.919
68 260276_at AT1G80450 [VQ motif-containing protein] 0.326 0.800
69 253425_at AT4G32190 [Myosin heavy chain-related protein] 0.325 -1.662
70 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.324 -2.820
71 266555_at AT2G46270 GBF3, G-box binding factor 3 0.324 3.572
72 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.936 -0.049
73 264157_at AT1G65310 ATXTH17, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 17, XTH17, xyloglucan endotransglucosylase/hydrolase 17 -0.852 -0.967
74 259454_at AT1G44050 [Cysteine/Histidine-rich C1 domain family protein] -0.805 -0.049
75 259064_at AT3G07490 AGD11, ARF-GAP domain 11, AtCML3, CML3, calmodulin-like 3 -0.717 -0.049
76 262564_at AT1G34330 [pseudogene] -0.715 -0.049
77 251410_at AT3G60280 UCC3, uclacyanin 3 -0.660 -0.049
78 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.646 -3.561
79 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 -0.634 -0.049
80 264391_at AT1G11920 [Pectin lyase-like superfamily protein] -0.600 -0.049
81 259960_at AT1G53710 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.583 -0.043
82 258832_at AT3G07070 [Protein kinase superfamily protein] -0.563 0.866
83 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] -0.515 -0.049
84 266546_at AT2G35270 AHL21, AT-hook motif nuclear localized protein 21, GIK, GIANT KILLER -0.513 -0.049
85 252510_at AT3G46270 [receptor protein kinase-related] -0.500 -0.049
86 252596_at AT3G45330 LecRK-I.1, L-type lectin receptor kinase I.1 -0.489 -3.305
87 261550_at AT1G63450 RHS8, root hair specific 8, XUT1, XYLOGLUCAN-SPECIFIC GALACTURONOSYLTRANSFERASE 1 -0.484 -0.049
88 246024_at AT5G21130 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.472 -0.049
89 245636_at AT1G25240 [ENTH/VHS/GAT family protein] -0.472 0.481
90 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 -0.469 -2.710
91 260804_at AT1G78410 [VQ motif-containing protein] -0.465 -1.658
92 267622_at AT2G39690 unknown -0.463 0.190
93 251317_at AT3G61490 [Pectin lyase-like superfamily protein] -0.455 0.154
94 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] -0.454 -0.049
95 259195_at AT3G01730 unknown -0.448 -0.049
96 249934_at AT5G22410 RHS18, root hair specific 18 -0.446 -0.049
97 256352_at AT1G54970 ATPRP1, proline-rich protein 1, PRP1, proline-rich protein 1, RHS7, ROOT HAIR SPECIFIC 7 -0.441 -0.049
98 266785_at AT2G28970 [Leucine-rich repeat protein kinase family protein] -0.441 2.375
99 250632_at AT5G07450 CYCP4;3, cyclin p4;3 -0.418 -0.049
100 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] -0.415 -0.049
101 254749_at AT4G13130 [Cysteine/Histidine-rich C1 domain family protein] -0.414 2.792
102 263327_at AT2G15300 [Leucine-rich repeat protein kinase family protein] -0.408 0.188
103 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 -0.407 -2.964
104 265038_at AT1G03920 [Protein kinase family protein] -0.406 -3.764
105 267133_at AT2G23440 unknown -0.401 -0.049
106 259650_at AT1G55290 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.401 -0.049
107 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.399 -1.027
108 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.392 -1.519
109 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 -0.391 -4.723
110 256626_at AT3G20015 [Eukaryotic aspartyl protease family protein] -0.390 -0.542
111 256529_at AT1G33260 [Protein kinase superfamily protein] -0.378 -5.601
112 256769_at AT3G13690 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] -0.374 -0.689
113 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 -0.369 0.867
114 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] -0.364 -0.049
115 251183_at AT3G62630 unknown -0.364 -4.587
116 255773_at AT1G18590 ATSOT17, SULFOTRANSFERASE 17, ATST5C, ARABIDOPSIS SULFOTRANSFERASE 5C, SOT17, sulfotransferase 17 -0.364 -1.971
117 251154_at AT3G63110 ATIPT3, isopentenyltransferase 3, IPT3, isopentenyltransferase 3 -0.363 -5.534
118 262353_at AT1G64210 [Leucine-rich repeat protein kinase family protein] -0.362 0.481
119 245584_at AT4G14940 AO1, amine oxidase 1, ATAO1, amine oxidase 1 -0.349 -4.123
120 260053_at AT1G78120 TPR12, tetratricopeptide repeat 12 -0.347 -4.022
121 247581_at AT5G61350 [Protein kinase superfamily protein] -0.344 -4.708
122 254431_at AT4G20840 [FAD-binding Berberine family protein] -0.344 -1.977
123 245036_at AT2G26410 Iqd4, IQ-domain 4 -0.342 -0.049
124 256189_at AT1G30140 unknown -0.337 -0.049
125 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 -0.327 -2.640
126 263737_at AT1G60010 unknown -0.322 0.740
127 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.319 -3.355
128 258468_at AT3G06070 unknown -0.317 -1.972
129 255732_at AT1G25450 CER60, ECERIFERUM 60, KCS5, 3-ketoacyl-CoA synthase 5 -0.317 -0.210
130 260320_at AT1G63930 ROH1, from the Czech 'roh' meaning 'corner' -0.310 -2.181
131 248077_at AT5G55770 [Cysteine/Histidine-rich C1 domain family protein] -0.306 -0.049
132 246093_at AT5G20550 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.304 -0.049
133 253692_at AT4G29720 ATPAO5, polyamine oxidase 5, PAO5, polyamine oxidase 5 -0.298 -0.707
134 266083_at AT2G37820 [Cysteine/Histidine-rich C1 domain family protein] -0.293 -0.580
135 263575_at AT2G17070 unknown -0.289 -0.049
136 259098_at AT3G04790 EMB3119, EMBRYO DEFECTIVE 3119 -0.283 -3.909
137 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 -0.283 -0.049
138 246402_at AT1G57570 [Mannose-binding lectin superfamily protein] -0.280 -0.014
139 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.279 -3.798
140 255606_at AT4G01110 unknown -0.276 -0.128
141 266644_at AT2G29660 [zinc finger (C2H2 type) family protein] -0.273 3.376
142 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.273 0.951