4.0:Information of module
root columella root cap 40 mM NaCl
In comparison with Cold Stress 24 h (root) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009414 response to water deprivation BP 3.408e-15
GO:0009415 response to water BP 1.104e-14
GO:0042221 response to chemical BP 2.004e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044036 cell wall macromolecule metabolic proces... BP 7.363e-05
GO:0009735 response to cytokinin BP 4.298e-04
GO:0009736 cytokinin-activated signaling pathway BP 5.590e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root columella root cap 40 mM NaCl		 Log2 signal ratio
Cold Stress 24 h (root)
1 264612_at AT1G04560 [AWPM-19-like family protein] 1.042 0.110
2 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 1.005 0.804
3 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.986 0.838
4 247061_at AT5G66780 unknown 0.986 0.678
5 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.934 0.097
6 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.927 1.345
7 267343_at AT2G44260 unknown 0.912 -0.137
8 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.907 0.371
9 265224_at AT2G36710 [Pectin lyase-like superfamily protein] 0.878 0.101
10 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.822 0.635
11 251751_at AT3G55720 unknown 0.808 -0.031
12 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.782 1.274
13 253168_at AT4G35070 [SBP (S-ribonuclease binding protein) family protein] 0.754 0.117
14 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 0.743 1.020
15 259947_at AT1G71530 [Protein kinase superfamily protein] 0.727 0.081
16 253595_at AT4G30830 unknown 0.723 1.031
17 263742_at AT2G20625 unknown 0.723 0.117
18 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.722 0.119
19 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.722 0.134
20 264415_at AT1G43160 RAP2.6, related to AP2 6 0.721 0.445
21 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.719 0.605
22 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.696 0.743
23 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.695 0.197
24 250868_at AT5G03860 MLS, malate synthase 0.693 0.057
25 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.693 0.211
26 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.680 0.642
27 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.655 0.077
28 261088_at AT1G07590 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.655 0.287
29 251603_at AT3G57760 [Protein kinase superfamily protein] 0.646 0.819
30 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.645 0.152
31 245483_at AT4G16190 [Papain family cysteine protease] 0.645 0.016
32 258652_at AT3G09910 ATRAB18C, ATRABC2B, RAB GTPase homolog C2B, RABC2b, RAB GTPase homolog C2B 0.641 0.272
33 266143_at AT2G38905 [Low temperature and salt responsive protein family] 0.640 0.246
34 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.634 0.050
35 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 0.627 0.334
36 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.601 0.391
37 267372_at AT2G26290 ARSK1, root-specific kinase 1 0.598 0.481
38 254170_at AT4G24430 [Rhamnogalacturonate lyase family protein] 0.585 0.202
39 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.582 0.726
40 262689_at AT1G62700 ANAC026, Arabidopsis NAC domain containing protein 26, VND5, VASCULAR RELATED NAC-DOMAIN PROTEIN 5 0.581 0.082
41 250826_at AT5G05220 unknown 0.572 0.859
42 264102_at AT1G79270 ECT8, evolutionarily conserved C-terminal region 8 0.567 0.173
43 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.565 0.977
44 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 0.564 0.436
45 260540_at AT2G43500 NLP8, NIN-like protein 8 0.558 0.861
46 252210_at AT3G50410 OBP1, OBF binding protein 1 0.557 0.393
47 247269_at AT5G64210 AOX2, alternative oxidase 2 0.550 0.123
48 252321_at AT3G48510 unknown 0.546 0.368
49 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.545 0.672
50 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.536 -0.049
51 256114_at AT1G16850 unknown 0.531 1.124
52 251810_at AT3G55250 PDE329, PIGMENT DEFECTIVE 329 0.522 -0.036
53 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] 0.499 0.354
54 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.495 0.432
55 245436_at AT4G16620 UMAMIT8, Usually multiple acids move in and out Transporters 8 0.492 0.025
56 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.488 0.352
57 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 0.487 0.625
58 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.480 0.471
59 260983_at AT1G53560 [Ribosomal protein L18ae family] 0.464 -0.340
60 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.463 0.472
61 259831_at AT1G69600 ATHB29, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, ZFHD1, zinc finger homeodomain 1, ZHD11, ZINC FINGER HOMEODOMAIN 11 0.460 0.092
62 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.457 0.439
63 250157_at AT5G15180 [Peroxidase superfamily protein] 0.455 0.038
64 252250_at AT3G49790 [Carbohydrate-binding protein] 0.451 0.084
65 257672_at AT3G20300 unknown 0.447 0.100
66 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.444 0.120
67 246279_at AT4G36740 ATHB40, homeobox protein 40, HB-5, HB40, homeobox protein 40 0.436 0.031
68 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.428 0.792
69 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.417 0.357
70 251752_at AT3G55740 ATPROT2, PROLINE TRANSPORTER 2, PROT2, proline transporter 2 0.417 0.442
71 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.406 0.146
72 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.402 0.014
73 255903_at AT1G17950 ATMYB52, MYB DOMAIN PROTEIN 52, BW52, MYB52, myb domain protein 52 0.402 -0.022
74 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] 0.401 0.082
75 251644_at AT3G57540 [Remorin family protein] 0.399 0.272
76 257007_at AT3G14205 [Phosphoinositide phosphatase family protein] 0.396 0.284
77 253841_at AT4G27830 AtBGLU10, BGLU10, beta glucosidase 10 0.396 0.655
78 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.396 0.357
79 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 0.392 0.100
80 261618_at AT1G33110 [MATE efflux family protein] 0.391 0.264
81 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] 0.390 0.051
82 257582_at AT1G50720 [Stigma-specific Stig1 family protein] -0.879 0.019
83 255516_at AT4G02270 RHS13, root hair specific 13 -0.730 -0.061
84 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.581 -0.127
85 251266_at AT3G62320 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.561 0.054
86 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.557 -0.171
87 246814_at AT5G27200 ACP5, acyl carrier protein 5 -0.525 0.051
88 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.524 0.010
89 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.494 -0.284
90 259596_at AT1G28130 GH3.17 -0.493 -0.541
91 255548_at AT4G01930 [Cysteine/Histidine-rich C1 domain family protein] -0.486 -0.076
92 259857_at AT1G68430 unknown -0.463 -0.289
93 246229_at AT4G37160 sks15, SKU5 similar 15 -0.457 -0.195
94 264896_at AT1G23210 AtGH9B6, glycosyl hydrolase 9B6, GH9B6, glycosyl hydrolase 9B6 -0.437 0.025
95 262162_at AT1G78020 unknown -0.432 -0.528
96 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.431 -0.161
97 249440_at AT5G40030 [Protein kinase superfamily protein] -0.425 -0.169
98 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.423 -0.128
99 251010_at AT5G02550 unknown -0.422 -0.100
100 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 -0.406 0.345
101 260539_at AT2G43480 [Peroxidase superfamily protein] -0.400 -0.002
102 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 -0.398 0.099
103 248112_at AT5G55350 [MBOAT (membrane bound O-acyl transferase) family protein] -0.396 0.034
104 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 -0.393 0.205
105 261085_at AT1G17480 IQD7, IQ-domain 7 -0.389 -0.004
106 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.388 -0.136
107 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.383 0.019
108 253908_at AT4G27260 GH3.5, WES1 -0.380 -0.132
109 253166_at AT4G35290 ATGLR3.2, ATGLUR2, GLR3.2, GLUTAMATE RECEPTOR 3.2, GLUR2, glutamate receptor 2 -0.379 0.084
110 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] -0.378 0.021
111 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.375 -0.185
112 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.374 -0.211
113 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 -0.374 -0.350
114 258521_at AT3G06680 [Ribosomal L29e protein family] -0.370 -0.035
115 248740_at AT5G48130 [Phototropic-responsive NPH3 family protein] -0.367 0.008
116 249886_at AT5G22320 [Leucine-rich repeat (LRR) family protein] -0.364 -0.019
117 260683_at AT1G17560 HLL, HUELLENLOS -0.363 -0.081
118 260769_at AT1G49010 [Duplicated homeodomain-like superfamily protein] -0.353 0.183
119 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.348 -0.103
120 254109_at AT4G25240 SKS1, SKU5 similar 1 -0.345 -0.200
121 263412_at AT2G28720 [Histone superfamily protein] -0.342 0.048
122 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.341 -0.292
123 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] -0.338 0.117
124 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.333 0.131
125 250434_at AT5G10390 H3.1, histone 3.1 -0.333 -0.052
126 250153_at AT5G15130 ATWRKY72, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY72, WRKY DNA-binding protein 72 -0.327 0.105
127 245479_at AT4G16140 [proline-rich family protein] -0.322 -0.071
128 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.320 -0.539
129 267586_at AT2G41950 unknown -0.319 0.122
130 246888_at AT5G26270 unknown -0.315 -0.221
131 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] -0.312 -0.060
132 248766_at AT5G47580 ASG7, ALTERED SEED GERMINATION 7 -0.312 0.186
133 265057_at AT1G52140 unknown -0.308 -0.087
134 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.305 -0.570
135 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 -0.302 -0.088
136 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.301 -0.075
137 247673_at AT5G60230 ATSEN2, SPLICING ENDONUCLEASE 2, SEN2, splicing endonuclease 2 -0.301 -0.216
138 249427_at AT5G39850 [Ribosomal protein S4] -0.297 -0.411
139 261924_at AT1G22550 [Major facilitator superfamily protein] -0.296 -0.420
140 247725_at AT5G59410 [Rab5-interacting family protein] -0.296 -0.082
141 256508_at AT1G75140 unknown -0.295 -0.181
142 254749_at AT4G13130 [Cysteine/Histidine-rich C1 domain family protein] -0.291 -0.128
143 260054_at AT1G78130 UNE2, unfertilized embryo sac 2 -0.288 -0.344
144 245674_at AT1G56680 [Chitinase family protein] -0.287 -0.560
145 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.283 -0.052
146 249184_at AT5G43020 [Leucine-rich repeat protein kinase family protein] -0.281 -0.002
147 264395_at AT1G12070 [Immunoglobulin E-set superfamily protein] -0.280 0.009
148 262594_at AT1G15250 [Zinc-binding ribosomal protein family protein] -0.280 -0.109
149 247991_at AT5G56320 ATEXP14, ATEXPA14, expansin A14, ATHEXP ALPHA 1.5, EXP14, EXPANSIN 14, EXPA14, expansin A14 -0.278 -0.029
150 256784_at AT3G13674 unknown -0.274 -0.153
151 258257_at AT3G26770 [NAD(P)-binding Rossmann-fold superfamily protein] -0.270 -0.210
152 262657_at AT1G14210 [Ribonuclease T2 family protein] -0.270 -0.127
153 256154_at AT3G08490 unknown -0.269 0.053
154 260165_at AT1G79850 CS17, PDE347, PIGMENT DEFECTIVE 347, PRPS17, PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, RPS17, ribosomal protein S17 -0.269 0.045
155 260377_at AT1G73930 unknown -0.266 -0.012
156 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.266 -0.122
157 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 -0.266 0.052
158 245245_at AT1G44318 hemb2 -0.265 0.110
159 263525_at AT2G24840 AGL61, AGAMOUS-like 61, DIA, DIANA -0.264 0.179
160 252506_at AT3G46180 ATUTR5, UDP-GALACTOSE TRANSPORTER 5, UTR5, UDP-galactose transporter 5 -0.263 -0.053
161 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 -0.182