4.0:Information of module
root columella root cap 40 mM NaCl
In comparison with Col0 roots 2hr KNO3 nitrogen help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009414 response to water deprivation BP 3.408e-15
GO:0009415 response to water BP 1.104e-14
GO:0042221 response to chemical BP 2.004e-10
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044036 cell wall macromolecule metabolic proces... BP 7.363e-05
GO:0009735 response to cytokinin BP 4.298e-04
GO:0009736 cytokinin-activated signaling pathway BP 5.590e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
root columella root cap 40 mM NaCl		 Log2 signal ratio
Col0 roots 2hr KNO3 nitrogen
1 264612_at AT1G04560 [AWPM-19-like family protein] 1.042 0.113
2 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 1.005 0.027
3 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.986 -0.108
4 247061_at AT5G66780 unknown 0.986 -0.011
5 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.934 0.110
6 250648_at AT5G06760 AtLEA4-5, Late Embryogenesis Abundant 4-5, LEA4-5, Late Embryogenesis Abundant 4-5 0.927 0.121
7 267343_at AT2G44260 unknown 0.912 -0.005
8 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) 0.907 0.064
9 265224_at AT2G36710 [Pectin lyase-like superfamily protein] 0.878 0.082
10 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.822 -0.054
11 251751_at AT3G55720 unknown 0.808 -0.082
12 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.782 0.022
13 253168_at AT4G35070 [SBP (S-ribonuclease binding protein) family protein] 0.754 0.028
14 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 0.743 -0.067
15 259947_at AT1G71530 [Protein kinase superfamily protein] 0.727 0.179
16 253595_at AT4G30830 unknown 0.723 -0.033
17 263742_at AT2G20625 unknown 0.723 -0.022
18 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.722 -0.055
19 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.722 0.039
20 264415_at AT1G43160 RAP2.6, related to AP2 6 0.721 -0.088
21 249494_at AT5G39050 PMAT1, phenolic glucoside malonyltransferase 1 0.719 -0.142
22 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.696 -0.108
23 266327_at AT2G46680 ATHB-7, homeobox 7, ATHB7, ARABIDOPSIS THALIANA HOMEOBOX 7, HB-7, homeobox 7 0.695 -0.071
24 250868_at AT5G03860 MLS, malate synthase 0.693 -0.015
25 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.693 -0.113
26 251272_at AT3G61890 ATHB-12, homeobox 12, ATHB12, ARABIDOPSIS THALIANA HOMEOBOX 12, HB-12, homeobox 12 0.680 -0.033
27 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 0.655 -0.001
28 261088_at AT1G07590 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.655 0.040
29 251603_at AT3G57760 [Protein kinase superfamily protein] 0.646 -0.030
30 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.645 0.053
31 245483_at AT4G16190 [Papain family cysteine protease] 0.645 -0.034
32 258652_at AT3G09910 ATRAB18C, ATRABC2B, RAB GTPase homolog C2B, RABC2b, RAB GTPase homolog C2B 0.641 -0.113
33 266143_at AT2G38905 [Low temperature and salt responsive protein family] 0.640 0.003
34 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.634 0.078
35 250252_at AT5G13750 ZIFL1, zinc induced facilitator-like 1 0.627 -0.040
36 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.601 -0.195
37 267372_at AT2G26290 ARSK1, root-specific kinase 1 0.598 -0.062
38 254170_at AT4G24430 [Rhamnogalacturonate lyase family protein] 0.585 -0.038
39 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 0.582 0.021
40 262689_at AT1G62700 ANAC026, Arabidopsis NAC domain containing protein 26, VND5, VASCULAR RELATED NAC-DOMAIN PROTEIN 5 0.581 -0.043
41 250826_at AT5G05220 unknown 0.572 0.069
42 264102_at AT1G79270 ECT8, evolutionarily conserved C-terminal region 8 0.567 -0.023
43 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.565 -0.034
44 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 0.564 -0.075
45 260540_at AT2G43500 NLP8, NIN-like protein 8 0.558 -0.170
46 252210_at AT3G50410 OBP1, OBF binding protein 1 0.557 -0.053
47 247269_at AT5G64210 AOX2, alternative oxidase 2 0.550 -0.015
48 252321_at AT3G48510 unknown 0.546 -0.030
49 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.545 -0.226
50 264148_at AT1G02220 ANAC003, NAC domain containing protein 3, NAC003, NAC domain containing protein 3 0.536 -0.142
51 256114_at AT1G16850 unknown 0.531 -0.043
52 251810_at AT3G55250 PDE329, PIGMENT DEFECTIVE 329 0.522 0.150
53 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] 0.499 0.072
54 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.495 -0.024
55 245436_at AT4G16620 UMAMIT8, Usually multiple acids move in and out Transporters 8 0.492 -0.097
56 253722_at AT4G29190 AtC3H49, AtOZF2, Arabidopsis thaliana oxidation-related zinc finger 2, AtTZF3, OZF2, oxidation-related zinc finger 2, TZF3, tandem zinc finger 3 0.488 -0.034
57 247957_at AT5G57050 ABI2, ABA INSENSITIVE 2, AtABI2 0.487 -0.102
58 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.480 0.026
59 260983_at AT1G53560 [Ribosomal protein L18ae family] 0.464 -0.024
60 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.463 -0.018
61 259831_at AT1G69600 ATHB29, ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 29, ZFHD1, zinc finger homeodomain 1, ZHD11, ZINC FINGER HOMEODOMAIN 11 0.460 -0.075
62 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.457 -0.024
63 250157_at AT5G15180 [Peroxidase superfamily protein] 0.455 -0.025
64 252250_at AT3G49790 [Carbohydrate-binding protein] 0.451 0.088
65 257672_at AT3G20300 unknown 0.447 -0.064
66 262635_at AT1G06570 HPD, 4-hydroxyphenylpyruvate dioxygenase, HPPD, 4-hydroxyphenylpyruvate dioxygenase, PDS1, phytoene desaturation 1 0.444 -0.055
67 246279_at AT4G36740 ATHB40, homeobox protein 40, HB-5, HB40, homeobox protein 40 0.436 0.051
68 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.428 0.015
69 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.417 -0.049
70 251752_at AT3G55740 ATPROT2, PROLINE TRANSPORTER 2, PROT2, proline transporter 2 0.417 0.057
71 259010_at AT3G07340 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.406 0.173
72 249087_at AT5G44210 ATERF-9, ERF DOMAIN PROTEIN- 9, ATERF9, ERF DOMAIN PROTEIN 9, ERF9, erf domain protein 9 0.402 0.056
73 255903_at AT1G17950 ATMYB52, MYB DOMAIN PROTEIN 52, BW52, MYB52, myb domain protein 52 0.402 -0.114
74 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] 0.401 0.053
75 251644_at AT3G57540 [Remorin family protein] 0.399 0.067
76 257007_at AT3G14205 [Phosphoinositide phosphatase family protein] 0.396 -0.053
77 253841_at AT4G27830 AtBGLU10, BGLU10, beta glucosidase 10 0.396 -0.042
78 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.396 0.056
79 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 0.392 -0.087
80 261618_at AT1G33110 [MATE efflux family protein] 0.391 -0.146
81 250079_at AT5G16650 [Chaperone DnaJ-domain superfamily protein] 0.390 -0.006
82 257582_at AT1G50720 [Stigma-specific Stig1 family protein] -0.879 -0.028
83 255516_at AT4G02270 RHS13, root hair specific 13 -0.730 0.065
84 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.581 0.029
85 251266_at AT3G62320 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.561 0.048
86 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.557 0.015
87 246814_at AT5G27200 ACP5, acyl carrier protein 5 -0.525 0.027
88 249532_at AT5G38780 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.524 -0.029
89 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 -0.494 0.079
90 259596_at AT1G28130 GH3.17 -0.493 0.023
91 255548_at AT4G01930 [Cysteine/Histidine-rich C1 domain family protein] -0.486 0.019
92 259857_at AT1G68430 unknown -0.463 0.080
93 246229_at AT4G37160 sks15, SKU5 similar 15 -0.457 0.041
94 264896_at AT1G23210 AtGH9B6, glycosyl hydrolase 9B6, GH9B6, glycosyl hydrolase 9B6 -0.437 0.002
95 262162_at AT1G78020 unknown -0.432 -0.030
96 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.431 -0.061
97 249440_at AT5G40030 [Protein kinase superfamily protein] -0.425 -0.032
98 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.423 0.004
99 251010_at AT5G02550 unknown -0.422 -0.082
100 261881_at AT1G80760 NIP6, NIP6;1, NOD26-like intrinsic protein 6;1, NLM7 -0.406 0.014
101 260539_at AT2G43480 [Peroxidase superfamily protein] -0.400 0.078
102 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 -0.398 -0.032
103 248112_at AT5G55350 [MBOAT (membrane bound O-acyl transferase) family protein] -0.396 0.170
104 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 -0.393 -0.007
105 261085_at AT1G17480 IQD7, IQ-domain 7 -0.389 -0.053
106 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.388 0.029
107 247477_at AT5G62340 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.383 0.062
108 253908_at AT4G27260 GH3.5, WES1 -0.380 -0.050
109 253166_at AT4G35290 ATGLR3.2, ATGLUR2, GLR3.2, GLUTAMATE RECEPTOR 3.2, GLUR2, glutamate receptor 2 -0.379 -0.003
110 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] -0.378 0.044
111 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.375 -0.133
112 261975_at AT1G64640 AtENODL8, ENODL8, early nodulin-like protein 8 -0.374 0.016
113 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 -0.374 -0.001
114 258521_at AT3G06680 [Ribosomal L29e protein family] -0.370 -0.037
115 248740_at AT5G48130 [Phototropic-responsive NPH3 family protein] -0.367 -0.010
116 249886_at AT5G22320 [Leucine-rich repeat (LRR) family protein] -0.364 -0.084
117 260683_at AT1G17560 HLL, HUELLENLOS -0.363 -0.001
118 260769_at AT1G49010 [Duplicated homeodomain-like superfamily protein] -0.353 -0.037
119 256596_at AT3G28540 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.348 -0.047
120 254109_at AT4G25240 SKS1, SKU5 similar 1 -0.345 0.171
121 263412_at AT2G28720 [Histone superfamily protein] -0.342 -0.016
122 255433_at AT4G03210 XTH9, xyloglucan endotransglucosylase/hydrolase 9 -0.341 0.006
123 255278_at AT4G04940 [transducin family protein / WD-40 repeat family protein] -0.338 0.030
124 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 -0.333 -0.066
125 250434_at AT5G10390 H3.1, histone 3.1 -0.333 0.039
126 250153_at AT5G15130 ATWRKY72, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY72, WRKY DNA-binding protein 72 -0.327 -0.030
127 245479_at AT4G16140 [proline-rich family protein] -0.322 0.006
128 248728_at AT5G48000 CYP708 A2, CYTOCHROME P450, FAMILY 708, SUBFAMILY A, POLYPEPTIDE 2, CYP708A2, cytochrome P450, family 708, subfamily A, polypeptide 2, THAH, THALIANOL HYDROXYLASE, THAH1, THALIANOL HYDROXYLASE 1 -0.320 0.047
129 267586_at AT2G41950 unknown -0.319 0.004
130 246888_at AT5G26270 unknown -0.315 0.012
131 249426_at AT5G39840 [ATP-dependent RNA helicase, mitochondrial, putative] -0.312 0.022
132 248766_at AT5G47580 ASG7, ALTERED SEED GERMINATION 7 -0.312 -0.021
133 265057_at AT1G52140 unknown -0.308 0.018
134 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] -0.305 0.160
135 267034_at AT2G38310 PYL4, PYR1-like 4, RCAR10, regulatory components of ABA receptor 10 -0.302 0.022
136 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.301 0.076
137 247673_at AT5G60230 ATSEN2, SPLICING ENDONUCLEASE 2, SEN2, splicing endonuclease 2 -0.301 0.051
138 249427_at AT5G39850 [Ribosomal protein S4] -0.297 0.023
139 261924_at AT1G22550 [Major facilitator superfamily protein] -0.296 0.057
140 247725_at AT5G59410 [Rab5-interacting family protein] -0.296 -0.000
141 256508_at AT1G75140 unknown -0.295 0.154
142 254749_at AT4G13130 [Cysteine/Histidine-rich C1 domain family protein] -0.291 0.057
143 260054_at AT1G78130 UNE2, unfertilized embryo sac 2 -0.288 -0.157
144 245674_at AT1G56680 [Chitinase family protein] -0.287 -0.027
145 256244_at AT3G12520 SULTR4;2, sulfate transporter 4;2 -0.283 0.092
146 249184_at AT5G43020 [Leucine-rich repeat protein kinase family protein] -0.281 0.094
147 264395_at AT1G12070 [Immunoglobulin E-set superfamily protein] -0.280 -0.052
148 262594_at AT1G15250 [Zinc-binding ribosomal protein family protein] -0.280 -0.007
149 247991_at AT5G56320 ATEXP14, ATEXPA14, expansin A14, ATHEXP ALPHA 1.5, EXP14, EXPANSIN 14, EXPA14, expansin A14 -0.278 0.052
150 256784_at AT3G13674 unknown -0.274 0.067
151 258257_at AT3G26770 [NAD(P)-binding Rossmann-fold superfamily protein] -0.270 -0.040
152 262657_at AT1G14210 [Ribonuclease T2 family protein] -0.270 -0.011
153 256154_at AT3G08490 unknown -0.269 -0.061
154 260165_at AT1G79850 CS17, PDE347, PIGMENT DEFECTIVE 347, PRPS17, PLASTID RIBOSOMAL SMALL SUBUNIT PROTEIN 17, RPS17, ribosomal protein S17 -0.269 -0.032
155 260377_at AT1G73930 unknown -0.266 0.142
156 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.266 -0.101
157 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 -0.266 -0.129
158 245245_at AT1G44318 hemb2 -0.265 0.028
159 263525_at AT2G24840 AGL61, AGAMOUS-like 61, DIA, DIANA -0.264 0.055
160 252506_at AT3G46180 ATUTR5, UDP-GALACTOSE TRANSPORTER 5, UTR5, UDP-galactose transporter 5 -0.263 0.083
161 251360_at AT3G61210 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.261 -0.068