4.0:Information of module
ga1-3 1h GA4
In comparison with Paclobutrazol 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006355 regulation of transcription, DNA-templat... BP 3.098e-05
GO:1903506 regulation of nucleic acid-templated tra... BP 3.098e-05
GO:2001141 regulation of RNA biosynthetic process BP 3.098e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009739 response to gibberellin BP 9.289e-15
GO:0009725 response to hormone BP 1.215e-11
GO:0009719 response to endogenous stimulus BP 2.434e-10
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ga1-3 1h GA4		 Log2 signal ratio
Paclobutrazol 3 h
1 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] 0.204 -0.000
2 264016_at AT2G21220 SAUR12, SMALL AUXIN UPREGULATED RNA 12 0.196 -0.097
3 256162_at AT1G55390 [Cysteine/Histidine-rich C1 domain family protein] 0.175 0.036
4 261274_at AT1G26780 AtMYB117, myb domain protein 117, LOF1, LATERAL ORGAN FUSION 1, MYB117, myb domain protein 117 0.157 -0.027
5 259299_at AT3G05080 unknown 0.150 0.003
6 265821_at AT2G17950 PGA6, WUS, WUSCHEL, WUS1, WUSCHEL 1 0.147 0.011
7 260400_at AT1G69860 [Major facilitator superfamily protein] 0.146 -0.029
8 256315_at AT1G35880 unknown 0.143 -0.040
9 266212_at AT2G06840 [copia-like retrotransposon family, has a 3.5e-184 P-value blast match to GB:AAC02666 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] 0.143 0.046
10 252178_at AT3G50750 BEH1, BES1/BZR1 homolog 1 0.142 0.054
11 258497_at AT3G02380 ATCOL2, CONSTANS-LIKE 2, BBX3, B-box domain protein 3, COL2, CONSTANS-like 2 0.138 0.044
12 267535_at AT2G41940 ZFP8, zinc finger protein 8 0.137 -0.040
13 245234_at AT4G25560 AtMYB18, myb domain protein 18, LAF1, LONG AFTER FAR-RED LIGHT 1, MYB18, myb domain protein 18 0.136 0.065
14 260270_at AT1G63730 [Disease resistance protein (TIR-NBS-LRR class) family] 0.132 -0.182
15 263718_at AT2G13570 NF-YB7, nuclear factor Y, subunit B7 0.130 -0.067
16 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 0.130 -0.021
17 265359_at AT2G16720 ATMYB7, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, ATY49, MYB7, myb domain protein 7 0.129 0.093
18 261245_at AT1G20135 [GDSL-like Lipase/Acylhydrolase family protein] 0.128 -0.019
19 263340_at AT2G05020 [pseudogene] 0.127 -0.076
20 251898_at AT3G54340 AP3, APETALA 3, ATAP3 0.126 -0.030
21 256392_at AT3G06260 GATL4, galacturonosyltransferase-like 4, GolS9, galactinol synthase 9 0.125 -0.023
22 251504_at AT3G59030 ATTT12, A. THALIANA TRANSPARENT TESTA, TT12, TRANSPARENT TESTA 12 0.123 -0.051
23 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] 0.123 0.088
24 260851_at AT1G21890 UMAMIT19, Usually multiple acids move in and out Transporters 19 0.122 -0.126
25 248735_at AT5G48100 ATLAC15, AtTT10, LAC15, LACCASE-LIKE 15, TT10, TRANSPARENT TESTA 10 0.122 -0.053
26 262334_at AT1G64010 [Serine protease inhibitor (SERPIN) family protein] 0.122 -0.108
27 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.122 0.028
28 258111_at AT3G14630 CYP72A9, cytochrome P450, family 72, subfamily A, polypeptide 9 0.121 -0.018
29 265801_at AT2G35670 FIE2, FERTILIZATION-INDEPENDENT ENDOSPERM 2, FIS2, FERTILIZATION INDEPENDENT SEED 2 0.121 0.011
30 266912_at AT2G45900 TRM13, TON1 Recruiting Motif 13 -0.676 -0.027
31 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.617 0.033
32 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 -0.536 0.009
33 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 -0.522 -0.004
34 259302_at AT3G05120 ATGID1A, GA INSENSITIVE DWARF1A, GID1A, GA INSENSITIVE DWARF1A -0.415 -0.010
35 245628_at AT1G56650 ATMYB75, MYB DOMAIN PROTEIN 75, MYB75, MYELOBLASTOSIS PROTEIN 75, PAP1, production of anthocyanin pigment 1, SIAA1, SUC-INDUCED ANTHOCYANIN ACCUMULATION 1 -0.373 -0.069
36 260883_at AT1G29270 unknown -0.366 -0.012
37 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 -0.347 -0.025
38 263151_at AT1G54120 unknown -0.331 -0.074
39 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.327 -0.006
40 250823_at AT5G05180 unknown -0.308 -0.061
41 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.278 -0.105
42 267614_at AT2G26710 BAS1, PHYB ACTIVATION TAGGED SUPPRESSOR 1, CYP72B1, CYP734A1 -0.266 -0.249
43 254293_at AT4G23060 IQD22, IQ-domain 22 -0.265 0.019
44 263325_at AT2G04240 XERICO -0.255 -0.005
45 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 -0.254 0.023
46 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.251 -0.028
47 246063_at AT5G19340 unknown -0.246 0.075
48 250907_at AT5G03670 TRM28, TON1 Recruiting Motif 28 -0.231 0.081
49 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.231 -0.005
50 250396_at AT5G10970 [C2H2 and C2HC zinc fingers superfamily protein] -0.218 -0.081
51 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.214 0.015
52 263963_at AT2G36080 ABS2, ABNORMAL SHOOT 2, NGAL1, NGATHA-Like 1 -0.198 0.038
53 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 -0.198 0.040
54 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 -0.195 0.092
55 249955_at AT5G18840 [Major facilitator superfamily protein] -0.187 -0.081
56 255900_at AT1G17830 unknown -0.182 0.008
57 254065_at AT4G25420 AT2301, ATGA20OX1, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, GA20OX1, GA5, GA REQUIRING 5 -0.181 0.060