4.0:Information of module
atmyc2 cop1 Seedling BL
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0008152 metabolic process BP 3.892e-10
GO:0071704 organic substance metabolic process BP 4.322e-08
GO:0009611 response to wounding BP 1.047e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0005976 polysaccharide metabolic process BP 5.933e-10
GO:0044264 cellular polysaccharide metabolic proces... BP 2.643e-08
GO:0010383 cell wall polysaccharide metabolic proce... BP 3.564e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
atmyc2 cop1 Seedling BL		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 0.897 -0.668
2 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 0.723 -1.315
3 255795_at AT2G33380 AtCLO3, Arabidopsis thaliana caleosin 3, CLO-3, caleosin 3, CLO3, caleosin 3, RD20, RESPONSIVE TO DESSICATION 20 0.591 -0.899
4 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.578 -0.272
5 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.547 0.927
6 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 0.492 0.340
7 252320_at AT3G48580 XTH11, xyloglucan endotransglucosylase/hydrolase 11 0.473 -1.007
8 249622_at AT5G37550 unknown 0.463 0.568
9 260031_at AT1G68790 CRWN3, CROWDED NUCLEI 3, LINC3, LITTLE NUCLEI3 0.460 0.069
10 252170_at AT3G50480 HR4, homolog of RPW8 4 0.446 -0.076
11 254251_at AT4G23300 CRK22, cysteine-rich RLK (RECEPTOR-like protein kinase) 22 0.426 -1.206
12 246943_at AT5G25440 [Protein kinase superfamily protein] 0.419 -0.683
13 264301_at AT1G78780 [pathogenesis-related family protein] 0.405 -0.313
14 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.389 0.218
15 246909_at AT5G25770 [alpha/beta-Hydrolases superfamily protein] 0.379 -0.194
16 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.376 0.020
17 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.374 -0.405
18 260656_at AT1G19380 unknown 0.371 -0.394
19 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.364 -0.453
20 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] 0.357 0.757
21 262940_at AT1G79520 [Cation efflux family protein] 0.357 -0.145
22 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.344 0.151
23 256425_at AT1G33560 ADR1, ACTIVATED DISEASE RESISTANCE 1 0.343 1.153
24 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.341 0.684
25 254917_at AT4G11350 unknown 0.338 0.569
26 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A 0.325 -0.165
27 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 0.323 -0.275
28 249777_at AT5G24210 [alpha/beta-Hydrolases superfamily protein] 0.322 -0.250
29 264717_at AT1G70140 ATFH8, formin 8, FH8, formin 8 0.320 0.519
30 252618_at AT3G45140 ATLOX2, ARABIODOPSIS THALIANA LIPOXYGENASE 2, LOX2, lipoxygenase 2 0.314 -0.863
31 255429_at AT4G03410 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.311 0.602
32 267169_at AT2G37540 [NAD(P)-binding Rossmann-fold superfamily protein] 0.311 -0.073
33 250255_at AT5G13730 SIG4, sigma factor 4, SIGD 0.310 0.163
34 256714_at AT2G34080 [Cysteine proteinases superfamily protein] 0.306 0.505
35 262096_at AT1G56010 anac021, Arabidopsis NAC domain containing protein 21, ANAC022, Arabidopsis NAC domain containing protein 22, NAC1, NAC domain containing protein 1 0.304 -0.420
36 259696_at AT1G63150 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.302 -0.164
37 254594_at AT4G18930 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] 0.293 0.284
38 257081_at AT3G30460 [RING/U-box superfamily protein] 0.284 -1.102
39 267457_at AT2G33790 AGP30, arabinogalactan protein 30, ATAGP30 -0.931 -0.752
40 248790_at AT5G47450 ATTIP2;3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, DELTA-TIP3, DELTA-TONOPLAST INTRINSIC PROTEIN 3, TIP2;3, tonoplast intrinsic protein 2;3 -0.895 0.200
41 253155_at AT4G35720 unknown -0.752 -1.104
42 262373_at AT1G73120 unknown -0.751 0.762
43 254377_at AT4G21650 [Subtilase family protein] -0.678 -1.096
44 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 -0.643 -0.492
45 262446_at AT1G49310 unknown -0.620 -0.427
46 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.620 -0.310
47 248252_at AT5G53250 AGP22, arabinogalactan protein 22, ATAGP22, ARABINOGALACTAN PROTEIN 22 -0.614 1.068
48 261825_at AT1G11545 XTH8, xyloglucan endotransglucosylase/hydrolase 8 -0.533 0.449
49 263002_at AT1G54200 unknown -0.520 -0.881
50 258552_at AT3G07010 [Pectin lyase-like superfamily protein] -0.513 0.093
51 252317_at AT3G48720 DCF, DEFICIENT IN CUTIN FERULATE -0.487 -0.887
52 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor -0.477 -0.983
53 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.449 -1.669
54 250958_at AT5G03260 LAC11, laccase 11 -0.435 -0.745
55 247951_at AT5G57240 ORP4C, OSBP(oxysterol binding protein)-related protein 4C -0.431 0.639
56 263264_at AT2G38810 HTA8, histone H2A 8 -0.423 0.710
57 257151_at AT3G27200 [Cupredoxin superfamily protein] -0.409 0.196
58 263276_at AT2G14100 CYP705A13, cytochrome P450, family 705, subfamily A, polypeptide 13 -0.409 1.255
59 262388_at AT1G49320 unknown -0.389 -0.372
60 266995_at AT2G34500 CYP710A1, cytochrome P450, family 710, subfamily A, polypeptide 1 -0.389 -0.854
61 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.388 0.156
62 255812_at AT4G10310 ATHKT1, HKT1, high-affinity K+ transporter 1, HKT1;1 -0.382 0.007
63 254490_at AT4G20320 [CTP synthase family protein] -0.377 -0.416
64 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.372 0.299
65 248646_at AT5G49100 unknown -0.362 0.166
66 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.358 -0.152
67 265250_at AT2G01950 BRL2, BRI1-like 2, VH1, VASCULAR HIGHWAY 1 -0.354 -0.352
68 258376_at AT3G17680 [Kinase interacting (KIP1-like) family protein] -0.353 0.738
69 246425_at AT5G17420 ATCESA7, CESA7, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, IRX3, IRREGULAR XYLEM 3, MUR10, MURUS 10 -0.345 0.709
70 251806_at AT3G55370 OBP3, OBF-binding protein 3 -0.343 0.262
71 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.333 0.425
72 245309_at AT4G15140 unknown -0.329 -0.133
73 250481_at AT5G10310 unknown -0.320 -0.960
74 252594_at AT3G45680 [Major facilitator superfamily protein] -0.315 -0.407
75 254043_at AT4G25990 CIL -0.310 0.380