4.0:Information of module
SAB
In comparison with ptpks2 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006412 translation BP 1.023e-34
GO:0001510 RNA methylation BP 3.889e-19
GO:0009058 biosynthetic process BP 3.540e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 7.497e-16
GO:0015979 photosynthesis BP 1.509e-14
GO:0019684 photosynthesis, light reaction BP 3.388e-12
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
SAB		 Log2 signal ratio
ptpks2
1 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 1.111 0.081
2 260408_at AT1G69880 ATH8, thioredoxin H-type 8, TH8, thioredoxin H-type 8 0.774 0.005
3 248353_at AT5G52320 CYP96A4, cytochrome P450, family 96, subfamily A, polypeptide 4 0.719 0.357
4 253505_at AT4G31970 CYP82C2, cytochrome P450, family 82, subfamily C, polypeptide 2 0.716 -0.074
5 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.666 -0.400
6 259561_at AT1G21250 AtWAK1, PRO25, WAK1, cell wall-associated kinase 1 0.666 0.094
7 250942_at AT5G03350 [Legume lectin family protein] 0.601 0.155
8 251884_at AT3G54150 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.584 -0.015
9 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.526 -0.035
10 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.522 -0.114
11 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.521 -0.001
12 263198_at AT1G53990 GLIP3, GDSL-motif lipase 3 0.516 -0.121
13 266267_at AT2G29460 ATGSTU4, glutathione S-transferase tau 4, GST22, GLUTATHIONE S-TRANSFERASE 22, GSTU4, glutathione S-transferase tau 4 0.481 0.033
14 265837_at AT2G14560 LURP1, LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA 0.481 0.127
15 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] 0.478 0.110
16 265327_at AT2G18210 unknown 0.460 -0.092
17 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.457 0.265
18 259864_at AT1G72800 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.455 0.170
19 253044_at AT4G37290 unknown 0.442 -0.137
20 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 0.437 -0.127
21 257206_at AT3G16530 [Legume lectin family protein] 0.437 -0.032
22 246633_at AT1G29720 [Leucine-rich repeat transmembrane protein kinase] 0.433 0.195
23 261221_at AT1G19960 unknown 0.411 0.152
24 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.407 0.157
25 251576_at AT3G58200 [TRAF-like family protein] 0.405 0.042
26 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.404 -0.134
27 249394_at AT5G40180 unknown 0.404 -0.104
28 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.402 -0.004
29 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.402 -0.138
30 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.395 -0.355
31 259653_at AT1G55240 unknown 0.393 0.007
32 266098_at AT2G37870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.386 -0.017
33 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.378 0.118
34 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.372 -0.066
35 258178_at AT3G21680 unknown 0.372 -0.046
36 256878_at AT3G26460 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.370 -0.032
37 252629_at AT3G44970 [Cytochrome P450 superfamily protein] 0.370 -0.001
38 261021_at AT1G26380 [FAD-binding Berberine family protein] 0.360 -0.029
39 259033_at AT3G09405 [Pectinacetylesterase family protein] 0.357 -0.132
40 246072_at AT5G20240 PI, PISTILLATA 0.355 -0.101
41 260472_at AT1G10990 unknown 0.351 -0.083
42 248822_at AT5G47000 [Peroxidase superfamily protein] 0.348 -0.195
43 248322_at AT5G52760 [Copper transport protein family] 0.347 0.143
44 245148_at AT2G45220 PME17, pectin methylesterase 17 0.346 -0.176
45 250142_at AT5G14650 [Pectin lyase-like superfamily protein] 0.345 0.006
46 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.344 0.060
47 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.343 0.118
48 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B 0.341 0.073
49 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 0.327 -0.056
50 264987_at AT1G27030 unknown 0.324 0.152
51 259328_at AT3G16440 ATMLP-300B, myrosinase-binding protein-like protein-300B, MEE36, maternal effect embryo arrest 36, MLP-300B, myrosinase-binding protein-like protein-300B 0.323 -0.051
52 261562_at AT1G01750 ADF11, actin depolymerizing factor 11 0.323 -0.086
53 246250_at AT4G36880 CP1, cysteine proteinase1, RDL1, RD21A-LIKE PROTEASE1 0.322 -0.090
54 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.320 -0.113
55 264433_at AT1G61810 BGLU45, beta-glucosidase 45 0.314 -0.054
56 249928_at AT5G22250 AtCAF1b, CCR4- associated factor 1b, CAF1b, CCR4- associated factor 1b 0.296 -0.179
57 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.295 0.183
58 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 0.294 -0.022
59 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.292 0.017
60 246293_at AT3G56710 SIB1, sigma factor binding protein 1 0.286 0.078
61 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.277 0.078
62 267264_at AT2G22970 SCPL11, serine carboxypeptidase-like 11 0.277 0.078
63 261785_at AT1G08230 [Transmembrane amino acid transporter family protein] 0.277 -0.089
64 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.273 0.182
65 259952_at AT1G71400 AtRLP12, receptor like protein 12, RLP12, receptor like protein 12 0.269 -0.105
66 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 0.267 0.103
67 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.263 0.073
68 266010_at AT2G37430 ZAT11, zinc finger of Arabidopsis thaliana 11 0.261 -0.124
69 261958_at AT1G64500 [Glutaredoxin family protein] 0.254 0.128
70 267288_at AT2G23680 [Cold acclimation protein WCOR413 family] 0.252 0.164
71 265611_at AT2G25510 unknown 0.251 0.003
72 267076_at AT2G41090 [Calcium-binding EF-hand family protein] 0.251 0.119
73 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 0.251 0.053
74 264269_at AT1G60240 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] 0.250 -0.131
75 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.249 0.265
76 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.248 0.371
77 256617_at AT3G22240 unknown 0.247 0.071
78 266739_at AT2G46730 [pseudogene] 0.244 -0.163
79 257191_at AT3G13175 unknown 0.241 -0.001
80 259481_at AT1G18970 GLP4, germin-like protein 4 0.241 0.026
81 258002_at AT3G28930 AIG2, AVRRPT2-INDUCED GENE 2 0.241 0.096
82 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] 0.241 -0.088
83 247189_at AT5G65390 AGP7, arabinogalactan protein 7 0.231 0.256
84 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 0.231 0.015
85 246260_at AT1G31820 PUT1, POLYAMINE UPTAKE TRANSPORTER 1 0.230 -0.006
86 260261_at AT1G68450 PDE337, PIGMENT DEFECTIVE 337 0.230 -0.072
87 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.229 0.219
88 249485_at AT5G39020 [Malectin/receptor-like protein kinase family protein] 0.227 -0.014
89 252340_at AT3G48920 AtMYB45, myb domain protein 45, MYB45, myb domain protein 45 0.226 -0.080
90 260833_at AT1G06800 DALL4, DAD1-Like Lipase 4, PLA-I{gamma}1, phospholipase A I gamma 1 0.226 -0.008
91 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.226 -0.108
92 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.224 0.030
93 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 0.224 -0.230
94 258566_at AT3G04110 ATGLR1.1, GLR1, GLUTAMATE RECEPTOR 1, GLR1.1, glutamate receptor 1.1 0.223 -0.055
95 262698_at AT1G75960 [AMP-dependent synthetase and ligase family protein] -0.554 -0.174
96 244966_at ATCG00600 PETG -0.539 -0.078
97 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.465 -0.307
98 263174_at AT1G54040 ESP, epithiospecifier protein, ESR, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY -0.463 0.181
99 244974_at ATCG00700 PSBN, photosystem II reaction center protein N -0.383 0.060
100 248394_at AT5G52070 [Agenet domain-containing protein] -0.375 0.073
101 244970_at ATCG00660 RPL20, ribosomal protein L20 -0.362 -0.054
102 247474_at AT5G62280 unknown -0.355 -0.235
103 244965_at ATCG00590 ORF31 -0.345 -0.143
104 250874_at AT5G04010 [F-box family protein] -0.320 -0.222
105 264707_at AT1G09730 [Cysteine proteinases superfamily protein] -0.285 -0.019
106 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.277 -0.246
107 257451_at AT1G05690 BT3, BTB and TAZ domain protein 3 -0.268 -0.087
108 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.263 -0.188
109 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 -0.257 0.089
110 252502_at AT3G46900 COPT2, copper transporter 2 -0.254 -0.014
111 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.247 -0.031
112 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.241 0.177
113 262113_at AT1G02820 AtLEA3, LEA3, late embryogenesis abundant 3 -0.234 -0.019
114 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] -0.234 0.115
115 262412_at AT1G34760 GF14 OMICRON, GRF11, general regulatory factor 11, RHS5, ROOT HAIR SPECIFIC 5 -0.230 -0.039
116 262388_at AT1G49320 unknown -0.221 -0.065
117 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.219 -0.066
118 251102_at AT5G01690 ATCHX27, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 27, CHX27, cation/H+ exchanger 27 -0.211 -0.218
119 258942_at AT3G09960 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.209 -0.105
120 245003_at ATCG00280 PSBC, photosystem II reaction center protein C -0.204 0.001
121 249645_at AT5G36910 THI2.2, thionin 2.2 -0.203 -0.121
122 250576_at AT5G08250 [Cytochrome P450 superfamily protein] -0.201 -0.073
123 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.198 0.046
124 245000_at ATCG00210 YCF6 -0.197 0.023
125 248832_at AT5G47170 unknown -0.195 -0.216
126 260917_at AT1G02700 unknown -0.194 -0.034
127 251709_at AT3G56380 ARR17, response regulator 17, RR17, response regulator 17 -0.191 -0.086
128 245016_at ATCG00500 ACCD, acetyl-CoA carboxylase carboxyl transferase subunit beta -0.190 -0.036
129 266026_at AT2G05980 [non-LTR retrotransposon family (LINE), has a 1.0e-42 P-value blast match to GB:NP_038607 L1 repeat, Tf subfamily, member 9 (LINE-element) (Mus musculus)] -0.190 -0.024
130 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.189 -0.135
131 254683_at AT4G13800 unknown -0.188 -0.089
132 251621_at AT3G57700 [Protein kinase superfamily protein] -0.187 0.056
133 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 -0.186 0.007
134 245018_at ATCG00520 YCF4 -0.186 0.045
135 261300_at AT1G48560 unknown -0.182 -0.027
136 264882_at AT1G61110 anac025, NAC domain containing protein 25, NAC025, NAC domain containing protein 25 -0.181 -0.139
137 264821_at AT1G03470 NET3A, Networked 3A -0.181 -0.003
138 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.179 -0.080
139 252700_at AT3G43690 [copia-like retrotransposon family protein, has a 1.4e-29 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.177 -0.003
140 266054_at AT2G40640 [RING/U-box superfamily protein] -0.173 -0.189
141 245011_at ATCG00430 PSBG, photosystem II reaction center protein G -0.167 0.093
142 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.165 0.013
143 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.165 -0.041
144 254634_at AT4G18650 [transcription factor-related] -0.162 0.039
145 248898_at AT5G46370 ATKCO2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, ATTPK2, TANDEM PORE K+ CHANNEL 2, KCO2, Ca2+ activated outward rectifying K+ channel 2 -0.158 -0.132
146 249677_at AT5G35970 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.156 0.106
147 245019_at ATCG00530 YCF10 -0.156 0.016
148 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.156 0.083
149 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.156 0.109
150 261336_at AT1G44790 [ChaC-like family protein] -0.155 0.053
151 245026_at ATCG00140 ATPH -0.155 0.032
152 263151_at AT1G54120 unknown -0.154 -0.021
153 251459_at AT3G60200 unknown -0.153 0.026
154 263837_at AT2G04500 [Cysteine/Histidine-rich C1 domain family protein] -0.151 -0.154
155 252573_at AT3G45260 [C2H2-like zinc finger protein] -0.151 0.098
156 267525_at AT2G30560 [glycine-rich protein] -0.150 -0.030
157 244938_at ATCG01120 RPS15, chloroplast ribosomal protein S15 -0.149 -0.011
158 266993_at AT2G39210 [Major facilitator superfamily protein] -0.147 0.073
159 260603_at AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.146 -0.033
160 265543_at AT2G28270 [Cysteine/Histidine-rich C1 domain family protein] -0.146 -0.095
161 260660_at AT1G19485 [Transducin/WD40 repeat-like superfamily protein] -0.143 -0.044
162 250327_at AT5G12050 unknown -0.143 -0.069
163 246118_at AT5G20340 BG5, beta-1,3-glucanase 5 -0.142 0.009
164 265280_at AT2G28355 LCR5, low-molecular-weight cysteine-rich 5 -0.142 -0.083
165 266165_at AT2G28190 CSD2, copper/zinc superoxide dismutase 2, CZSOD2, COPPER/ZINC SUPEROXIDE DISMUTASE 2 -0.140 0.005
166 247118_at AT5G65890 ACR1, ACT domain repeat 1 -0.137 0.031
167 266761_at AT2G47130 AtSDR3, SDR3, short-chain dehydrogenase/reductase 2 -0.136 0.266
168 245243_at AT1G44414 unknown -0.136 -0.125
169 246831_at AT5G26340 ATSTP13, SUGAR TRANSPORT PROTEIN 13, MSS1, STP13, SUGAR TRANSPORT PROTEIN 13 -0.134 -0.090
170 264843_at AT1G03400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.133 -0.042
171 258897_at AT3G05730 [LOCATED IN: endomembrane system] -0.132 0.128
172 245002_at ATCG00270 PSBD, photosystem II reaction center protein D -0.131 0.008
173 254008_at AT4G26380 [Cysteine/Histidine-rich C1 domain family protein] -0.130 -0.126
174 265885_at AT2G42330 [GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain] -0.129 -0.080
175 262883_at AT1G64780 AMT1;2, ammonium transporter 1;2, ATAMT1;2, ammonium transporter 1;2 -0.129 0.220
176 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 -0.128 0.006
177 250630_at AT5G07400 [forkhead-associated domain-containing protein / FHA domain-containing protein] -0.126 -0.172
178 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J -0.126 -0.053
179 253242_at AT4G34540 [NmrA-like negative transcriptional regulator family protein] -0.126 0.019
180 248956_at AT5G45610 SUV2, SENSITIVE TO UV 2 -0.126 -0.002
181 262314_at AT1G70810 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.126 -0.006
182 252842_at AT3G42120 unknown -0.125 -0.123
183 252087_at AT3G52080 chx28, cation/hydrogen exchanger 28 -0.125 -0.163
184 256895_at AT3G24680 [similar to zinc finger protein, putative [Arabidopsis thaliana] (TAIR:AT2G15520.1)] -0.125 0.035
185 262010_at AT1G35612 [expressed protein] -0.125 -0.149
186 264211_at AT1G22770 FB, GI, GIGANTEA -0.124 -0.156
187 256180_at AT1G51810 [Leucine-rich repeat protein kinase family protein] -0.122 -0.234
188 244972_at ATCG00680 PSBB, photosystem II reaction center protein B -0.121 0.047