4.0:Information of module
35S:PCO1 hypoxia
In comparison with cat2-2; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044711 single-organism biosynthetic process BP 2.521e-07
GO:0044281 small molecule metabolic process BP 2.663e-07
GO:0006732 coenzyme metabolic process BP 5.854e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0001666 response to hypoxia BP 7.164e-09
GO:0036293 response to decreased oxygen levels BP 1.297e-08
GO:0070482 response to oxygen levels BP 1.727e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S:PCO1 hypoxia		 Log2 signal ratio
cat2-2; harvested 8h continiously maintained in high CO2;
1 250152_at AT5G15120 unknown 0.408 -0.054
2 254839_at AT4G12400 Hop3, Hop3 0.364 -0.020
3 259037_at AT3G09350 Fes1A, Fes1A 0.256 -0.018
4 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.255 -0.042
5 251753_at AT3G55760 unknown 0.194 0.034
6 250732_at AT5G06480 [Immunoglobulin E-set superfamily protein] 0.178 0.038
7 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.175 0.108
8 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 0.156 0.075
9 256060_at AT1G07050 [CCT motif family protein] 0.150 -0.005
10 266612_at AT2G14860 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] 0.149 0.093
11 255016_at AT4G10120 ATSPS4F 0.144 0.027
12 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 0.140 0.001
13 245201_at AT1G67840 CSK, chloroplast sensor kinase 0.137 0.038
14 264948_at AT1G77030 [hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides] 0.131 -0.006
15 262491_at AT1G21650 SECA2 0.130 0.011
16 253300_at AT4G33580 ATBCA5, A. THALIANA BETA CARBONIC ANHYDRASE 5, BCA5, beta carbonic anhydrase 5 0.125 0.068
17 255808_at AT4G10280 [RmlC-like cupins superfamily protein] 0.118 0.005
18 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.116 0.011
19 264555_at AT1G09360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.114 0.005
20 266516_at AT2G47880 [Glutaredoxin family protein] 0.111 0.072
21 248753_at AT5G47630 mtACP3, mitochondrial acyl carrier protein 3 0.109 0.008
22 245594_at AT4G14570 AARE, acylamino acid-releasing enzyme, AtAARE 0.108 0.027
23 258445_at AT3G22400 ATLOX5, Arabidopsis thaliana lipoxygenase 5, LOX5 0.107 -0.026
24 253708_at AT4G29210 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 0.105 -0.022
25 256186_at AT1G51680 4CL.1, 4-COUMARATE:COA LIGASE 1, 4CL1, 4-coumarate:CoA ligase 1, AT4CL1, ARABIDOPSIS THALIANA 4-COUMARATE:COA LIGASE 1 0.104 0.033
26 264318_at AT1G04220 KCS2, 3-ketoacyl-CoA synthase 2 0.093 -0.028
27 264576_at AT1G05360 KMS2, Killing Me Slowly 2 0.093 0.026
28 254783_at AT4G12830 [alpha/beta-Hydrolases superfamily protein] 0.093 0.073
29 259780_at AT1G29630 [5'-3' exonuclease family protein] 0.093 -0.022
30 266115_at AT2G02140 LCR72, low-molecular-weight cysteine-rich 72, PDF2.6 0.092 -0.006
31 258095_at AT3G23610 DSPTP1, dual specificity protein phosphatase 1 0.091 -0.026
32 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 0.091 0.140
33 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.089 -0.027
34 264623_at AT1G09000 ANP1, NPK1-related protein kinase 1, MAPKKK1, MAP KINASE KINASE KINASE 1, NP1, NPK1-related protein kinase 1 0.088 0.036
35 261364_at AT1G53140 DRP5A, Dynamin related protein 5A 0.088 0.021
36 249851_at AT5G23260 ABS, ARABIDOPSIS BSISTER, AGL32, AGAMOUS-like 32, TT16, TRANSPARENT TESTA16 0.088 0.005
37 263982_at AT2G42860 unknown 0.086 -0.042
38 251271_at AT3G62050 [Putative endonuclease or glycosyl hydrolase] 0.086 0.038
39 265547_at AT2G28305 ATLOG1, LOG1, LONELY GUY 1 0.086 0.055
40 246774_at AT5G27530 [Pectin lyase-like superfamily protein] 0.085 -0.002
41 259505_at AT1G15810 [S15/NS1, RNA-binding protein] 0.085 0.030
42 263789_at AT2G24560 [GDSL-like Lipase/Acylhydrolase family protein] 0.081 0.011
43 261395_at AT1G79700 WRI4, WRINKLED 4 0.081 0.032
44 262942_at AT1G79450 ALIS5, ALA-interacting subunit 5 0.081 -0.209
45 265991_at AT2G24120 PDE319, PIGMENT DEFECTIVE 319, SCA3, SCABRA 3 0.080 -0.007
46 246725_at AT5G29040 [pseudogene] 0.080 0.030
47 257841_at AT3G25260 AtNPF4.1, NPF4.1, NRT1/ PTR family 4.1 0.080 0.023
48 256531_at AT1G33320 [Pyridoxal phosphate (PLP)-dependent transferases superfamily protein] 0.079 -0.042
49 261167_at AT1G04980 ATPDI10, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, ATPDIL2-2, PDI-like 2-2, PDI10, PROTEIN DISULFIDE ISOMERASE, PDIL2-2, PDI-like 2-2 0.079 -0.015
50 257316_at AT3G30750 unknown 0.078 -0.031
51 247015_at AT5G66960 [Prolyl oligopeptidase family protein] 0.078 -0.037
52 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -0.859 -0.463
53 264846_at AT2G17850 [Rhodanese/Cell cycle control phosphatase superfamily protein] -0.578 -0.152
54 255807_at AT4G10270 [Wound-responsive family protein] -0.535 -0.391
55 260668_at AT1G19530 unknown -0.449 -0.337
56 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 -0.420 -0.140
57 253416_at AT4G33070 AtPDC1, PDC1, pyruvate decarboxylase 1 -0.411 -0.101
58 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] -0.394 0.002
59 263096_at AT2G16060 AHB1, hemoglobin 1, ARATH GLB1, ATGLB1, GLB1, CLASS I HEMOGLOBIN, HB1, hemoglobin 1, NSHB1 -0.394 -0.271
60 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.377 -0.094
61 261567_at AT1G33055 unknown -0.371 -0.090
62 259879_at AT1G76650 CML38, calmodulin-like 38 -0.361 -0.186
63 253298_at AT4G33560 [Wound-responsive family protein] -0.350 -0.190
64 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.347 -0.049
65 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.337 -0.070
66 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.324 -0.143
67 254327_at AT4G22490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.309 0.033
68 250464_at AT5G10040 unknown -0.264 -0.026
69 253404_at AT4G32840 PFK6, phosphofructokinase 6 -0.259 0.008
70 251065_at AT5G01870 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.257 -0.016
71 245401_at AT4G17670 unknown -0.255 -0.155
72 254200_at AT4G24110 unknown -0.228 -0.123
73 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] -0.215 -0.014
74 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 -0.211 -0.030
75 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -0.204 0.035
76 258879_at AT3G03270 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.202 -0.062
77 249384_at AT5G39890 unknown -0.198 -0.029
78 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.191 -0.005
79 267470_at AT2G30490 ATC4H, CINNAMATE 4-HYDROXYLASE, C4H, cinnamate-4-hydroxylase, CYP73A5, REF3, REDUCED EPRDERMAL FLUORESCENCE 3 -0.180 -0.032
80 245275_at AT4G15210 AT-BETA-AMY, ATBETA-AMY, ARABIDOPSIS THALIANA BETA-AMYLASE, BAM5, beta-amylase 5, BMY1, RAM1, REDUCED BETA AMYLASE 1 -0.173 0.062
81 248684_at AT5G48485 DIR1, DEFECTIVE IN INDUCED RESISTANCE 1 -0.170 -0.064
82 247224_at AT5G65080 AGL68, AGAMOUS-like 68, MAF5, MADS AFFECTING FLOWERING 5 -0.163 -0.010
83 257074_at AT3G19660 unknown -0.158 -0.217
84 248719_at AT5G47910 ATRBOHD, RBOHD, respiratory burst oxidase homologue D -0.145 -0.062
85 252168_at AT3G50440 ATMES10, ARABIDOPSIS THALIANA METHYL ESTERASE 10, MES10, methyl esterase 10 -0.142 -0.014
86 260883_at AT1G29270 unknown -0.141 -0.126
87 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A -0.139 -0.465
88 260427_at AT1G72430 SAUR78, SMALL AUXIN UPREGULATED RNA 78 -0.136 -0.014
89 263182_at AT1G05575 unknown -0.136 -0.241
90 259681_at AT1G77760 GNR1, NIA1, nitrate reductase 1, NR1, NITRATE REDUCTASE 1 -0.136 -0.174
91 267518_at AT2G30500 NET4B, Networked 4B -0.134 -0.024
92 262232_at AT1G68600 [Aluminium activated malate transporter family protein] -0.134 0.039
93 247024_at AT5G66985 unknown -0.133 -0.201
94 257844_at AT3G28480 [Oxoglutarate/iron-dependent oxygenase] -0.129 -0.046
95 257226_at AT3G27880 unknown -0.128 -0.037
96 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.127 0.050
97 257925_at AT3G23170 unknown -0.121 -0.008
98 248686_at AT5G48540 [receptor-like protein kinase-related family protein] -0.121 -0.207
99 256262_at AT3G12150 unknown -0.114 0.031
100 261879_at AT1G50520 CYP705A27, cytochrome P450, family 705, subfamily A, polypeptide 27 -0.113 -0.040
101 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 -0.113 0.109