4.0:Information of module
pab polysome
In comparison with CCA14 dark late help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0007623 circadian rhythm BP 7.565e-12
GO:0048511 rhythmic process BP 7.565e-12
GO:0010162 seed dormancy process BP 6.194e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 2.691e-05
GO:1901700 response to oxygen-containing compound BP 5.390e-04
GO:0042221 response to chemical BP 7.011e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pab polysome		 Log2 signal ratio
CCA14 dark late
1 266393_at AT2G41260 ATM17, M17 1.034 0.409
2 264079_at AT2G28490 [RmlC-like cupins superfamily protein] 1.027 0.114
3 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 0.950 0.044
4 250468_at AT5G10120 [Ethylene insensitive 3 family protein] 0.943 0.079
5 253767_at AT4G28520 CRC, CRUCIFERIN C, CRU3, cruciferin 3 0.931 -0.005
6 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 0.857 0.100
7 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.806 0.043
8 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] 0.801 0.057
9 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.799 0.034
10 249353_at AT5G40420 OLE2, OLEOSIN 2, OLEO2, oleosin 2 0.726 0.075
11 251838_at AT3G54940 [Papain family cysteine protease] 0.686 0.131
12 264612_at AT1G04560 [AWPM-19-like family protein] 0.677 0.112
13 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.677 0.344
14 256814_at AT3G21370 BGLU19, beta glucosidase 19 0.660 0.048
15 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] 0.645 0.033
16 260088_at AT1G73190 ALPHA-TIP, ALPHA-TONOPLAST INTRINSIC PROTEIN, TIP3;1 0.586 0.065
17 265644_at AT2G27380 ATEPR1, extensin proline-rich 1, EPR1, extensin proline-rich 1 0.577 0.064
18 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 0.576 0.145
19 266654_at AT2G25890 [Oleosin family protein] 0.525 0.074
20 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.501 0.024
21 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME 0.479 0.058
22 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.477 0.133
23 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.450 0.035
24 247437_at AT5G62490 ATHVA22B, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE B, HVA22B, HVA22 homologue B 0.449 0.066
25 263881_at AT2G21820 unknown 0.407 0.107
26 263175_at AT1G05510 OBAP1a, Oil Body-Associated Protein 1a 0.397 0.029
27 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.396 0.065
28 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.392 0.050
29 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 0.386 -0.025
30 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.378 0.009
31 252137_at AT3G50980 XERO1, dehydrin xero 1 0.361 0.082
32 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] 0.357 0.030
33 260859_at AT1G43780 scpl44, serine carboxypeptidase-like 44 0.353 0.045
34 250780_at AT5G05290 ATEXP2, ATEXPA2, expansin A2, ATHEXP ALPHA 1.12, EXP2, EXPANSIN 2, EXPA2, expansin A2 0.348 0.055
35 256060_at AT1G07050 [CCT motif family protein] 0.347 -0.172
36 250868_at AT5G03860 MLS, malate synthase 0.338 0.190
37 245335_at AT4G16160 ATOEP16-2, ATOEP16-S 0.330 0.058
38 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 0.328 -0.392
39 254095_at AT4G25140 OLE1, OLEOSIN 1, OLEO1, oleosin 1 0.321 0.127
40 256815_at AT3G21380 [Mannose-binding lectin superfamily protein] 0.317 0.089
41 251731_at AT3G56350 [Iron/manganese superoxide dismutase family protein] 0.314 0.124
42 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] 0.313 0.143
43 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 0.307 0.071
44 248060_at AT5G55560 [Protein kinase superfamily protein] 0.304 0.050
45 257947_at AT3G21720 ICL, isocitrate lyase 0.296 0.146
46 252004_at AT3G52780 ATPAP20, PAP20 0.295 0.020
47 251772_at AT3G55920 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.294 -0.006
48 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.291 -0.310
49 256338_at AT1G72100 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] 0.286 0.179
50 256073_at AT1G18100 E12A11, MFT, MOTHER OF FT AND TFL1 0.282 0.086
51 253280_at AT4G34110 ATPAB2, ARABIDOPSIS POLY(A) BINDING 2, PAB2, poly(A) binding protein 2, PABP2, POLY(A) BINDING PROTEIN 2 -0.809 0.005
52 261614_at AT1G49760 PAB8, poly(A) binding protein 8, PABP8, POLY(A) BINDING PROTEIN 8 -0.713 0.016
53 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.423 0.596
54 260012_at AT1G67865 unknown -0.390 -0.273
55 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 -0.377 0.497
56 256527_at AT1G66100 [Plant thionin] -0.342 -0.679
57 264788_at AT2G17880 DJC24, DNA J protein C24 -0.338 0.087
58 245734_at AT1G73480 [alpha/beta-Hydrolases superfamily protein] -0.305 0.405
59 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.304 0.103
60 247474_at AT5G62280 unknown -0.302 0.256
61 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 -0.299 0.185
62 258414_at AT3G17380 [TRAF-like family protein] -0.291 -0.006
63 258392_at AT3G15400 ATA20, anther 20 -0.268 -0.057
64 256646_at AT3G13590 [Cysteine/Histidine-rich C1 domain family protein] -0.259 -0.013
65 247754_at AT5G59080 unknown -0.258 0.053
66 257671_at AT3G20450 [B-cell receptor-associated protein 31-like ] -0.242 -0.066
67 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 -0.242 0.280
68 247903_at AT5G57340 unknown -0.235 -0.023
69 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.235 -0.136
70 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 -0.228 -0.035
71 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.223 0.262
72 259573_at AT1G20390 [gypsy-like retrotransposon family, has a 1.5e-251 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.221 0.103
73 264021_at AT2G21200 SAUR7, SMALL AUXIN UPREGULATED RNA 7 -0.220 0.264
74 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.220 0.153
75 256266_at AT3G12320 LNK3, night light-inducible and clock-regulated 3 -0.220 0.499
76 250665_at AT5G06980 LNK4, night light-inducible and clock-regulated 4 -0.219 0.601
77 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 -0.218 0.617
78 259331_at AT3G03840 SAUR27, SMALL AUXIN UP RNA 27 -0.218 0.453
79 261256_at AT1G05760 RTM1, restricted tev movement 1 -0.215 0.012
80 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 -0.207 0.058
81 261350_at AT1G79770 unknown -0.205 -0.097
82 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.203 0.104
83 247921_at AT5G57660 ATCOL5, BBX6, B-box domain protein 6, COL5, CONSTANS-like 5 -0.202 0.415
84 267079_at AT2G41200 unknown -0.200 0.031
85 262680_at AT1G75880 [SGNH hydrolase-type esterase superfamily protein] -0.199 -0.193
86 260199_at AT1G67590 [Remorin family protein] -0.198 0.072
87 260112_at AT1G63310 unknown -0.197 0.042
88 265536_at AT2G15880 [Leucine-rich repeat (LRR) family protein] -0.183 0.027
89 260560_at AT2G43590 [Chitinase family protein] -0.183 0.086
90 247295_at AT5G64180 unknown -0.182 0.187
91 261776_at AT1G76190 SAUR56, SMALL AUXIN UPREGULATED RNA 56 -0.180 -0.020
92 253776_at AT4G28390 AAC3, ADP/ATP carrier 3, ATAAC3 -0.178 -0.013
93 260380_at AT1G73870 BBX16, B-box domain protein 16, COL7, CONSTANS-LIKE 7 -0.177 0.004
94 245543_at AT4G15260 [UDP-Glycosyltransferase superfamily protein] -0.177 0.067
95 251039_at AT5G02020 SIS, Salt Induced Serine rich -0.177 0.109
96 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT -0.172 0.099
97 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.171 0.124
98 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.167 0.377
99 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.167 0.003
100 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.166 -0.020