4.0:Information of module
pab nonpolysome
In comparison with Col light-light EtOH help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006334 nucleosome assembly BP 1.659e-11
GO:0034728 nucleosome organization BP 1.659e-11
GO:0065004 protein-DNA complex assembly BP 3.211e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006661 phosphatidylinositol biosynthetic proces... BP 8.783e-05
GO:0008654 phospholipid biosynthetic process BP 1.099e-04
GO:0060429 epithelium development BP 3.263e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pab nonpolysome		 Log2 signal ratio
Col light-light EtOH
1 250468_at AT5G10120 [Ethylene insensitive 3 family protein] 0.899 0.007
2 260716_at AT1G48130 ATPER1, 1-cysteine peroxiredoxin 1, PER1, 1-cysteine peroxiredoxin 1 0.731 0.142
3 249082_at AT5G44120 ATCRA1, CRUCIFERINA, CRA1, CRUCIFERINA, CRU1 0.722 0.273
4 256464_at AT1G32560 AtLEA4-1, Late Embryogenesis Abundant 4-1, LEA4-1, Late Embryogenesis Abundant 4-1 0.625 0.102
5 266544_at AT2G35300 AtLEA4-2, late embryogenesis abundant 4-2, LEA18, late embryogenesis abundant 18, LEA4-2, late embryogenesis abundant 4-2 0.616 0.064
6 264612_at AT1G04560 [AWPM-19-like family protein] 0.573 0.062
7 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.539 0.155
8 264079_at AT2G28490 [RmlC-like cupins superfamily protein] 0.533 0.170
9 250433_at AT5G10400 H3.1, histone 3.1 0.518 0.120
10 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.515 0.085
11 258707_at AT3G09480 [Histone superfamily protein] 0.474 0.083
12 256060_at AT1G07050 [CCT motif family protein] 0.467 0.096
13 256814_at AT3G21370 BGLU19, beta glucosidase 19 0.461 0.101
14 252019_at AT3G53040 [late embryogenesis abundant protein, putative / LEA protein, putative] 0.431 0.064
15 262719_at AT1G43590 unknown 0.423 -0.073
16 250624_at AT5G07330 unknown 0.419 0.034
17 257057_at AT3G15310 unknown 0.402 0.043
18 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 0.359 -0.049
19 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.348 -0.062
20 246273_at AT4G36700 [RmlC-like cupins superfamily protein] 0.342 0.036
21 258134_at AT3G24530 [AAA-type ATPase family protein / ankyrin repeat family protein] 0.339 0.083
22 258956_at AT3G01440 PnsL3, Photosynthetic NDH subcomplex L 3, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 0.339 0.032
23 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.334 0.003
24 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.332 0.058
25 257947_at AT3G21720 ICL, isocitrate lyase 0.325 -0.014
26 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 0.318 -0.078
27 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved 0.317 0.005
28 263951_at AT2G35960 NHL12, NDR1/HIN1-like 12 0.310 -0.276
29 248889_at AT5G46230 unknown 0.302 0.109
30 247256_at AT5G64730 [Transducin/WD40 repeat-like superfamily protein] 0.299 -0.009
31 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B 0.298 0.050
32 261487_at AT1G14340 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.287 -0.033
33 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 0.285 -0.056
34 257985_at AT3G20810 JMJ30, Jumonji C domain-containing protein 30, JMJD5, jumonji domain containing 5 0.282 0.087
35 263677_at AT1G04520 PDLP2, plasmodesmata-located protein 2 0.278 0.224
36 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.274 0.214
37 259655_at AT1G55210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.264 0.161
38 253280_at AT4G34110 ATPAB2, ARABIDOPSIS POLY(A) BINDING 2, PAB2, poly(A) binding protein 2, PABP2, POLY(A) BINDING PROTEIN 2 -0.855 0.005
39 260012_at AT1G67865 unknown -0.780 -0.057
40 261614_at AT1G49760 PAB8, poly(A) binding protein 8, PABP8, POLY(A) BINDING PROTEIN 8 -0.553 0.029
41 256527_at AT1G66100 [Plant thionin] -0.512 -0.037
42 253707_at AT4G29200 [Beta-galactosidase related protein] -0.464 0.020
43 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 -0.447 -0.156
44 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.351 -0.175
45 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.330 -0.052
46 264788_at AT2G17880 DJC24, DNA J protein C24 -0.289 -0.027
47 258097_at AT3G23660 [Sec23/Sec24 protein transport family protein] -0.260 -0.058
48 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 -0.260 0.001
49 255160_at AT4G07820 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.258 -0.113
50 250136_at AT5G15380 DRM1, domains rearranged methylase 1 -0.248 0.080
51 245085_at AT2G23350 PAB4, poly(A) binding protein 4, PABP4, POLY(A) BINDING PROTEIN 4 -0.239 0.016
52 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 -0.232 -0.065
53 249621_at AT5G37530 [NAD(P)-binding Rossmann-fold superfamily protein] -0.232 -0.113
54 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.228 -0.197
55 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 -0.226 -0.349
56 260004_at AT1G67860 unknown -0.220 -0.013
57 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.219 0.018
58 258894_at AT3G05650 AtRLP32, receptor like protein 32, RLP32, receptor like protein 32 -0.216 -0.046
59 254169_at AT4G24290 [MAC/Perforin domain-containing protein] -0.214 -0.035
60 252594_at AT3G45680 [Major facilitator superfamily protein] -0.214 0.107
61 259781_at AT1G29650 [non-LTR retrotransposon family (LINE), has a 1.5e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] -0.207 0.004
62 264899_at AT1G23130 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.199 0.015
63 260936_at AT1G45150 unknown -0.198 -0.046
64 261937_at AT1G22570 [Major facilitator superfamily protein] -0.197 0.107
65 266064_at AT2G18780 [F-box and associated interaction domains-containing protein] -0.196 -0.036
66 255801_at AT4G10130 [DNAJ heat shock N-terminal domain-containing protein] -0.188 -0.032
67 262230_at AT1G68560 ATXYL1, ALPHA-XYLOSIDASE 1, AXY3, altered xyloglucan 3, TRG1, thermoinhibition resistant germination 1, XYL1, alpha-xylosidase 1 -0.188 -0.012
68 266672_at AT2G29650 ANTR1, anion transporter 1, PHT4;1, phosphate transporter 4;1 -0.187 -0.096
69 256389_at AT3G06220 [AP2/B3-like transcriptional factor family protein] -0.185 0.043
70 259569_at AT1G20480 [AMP-dependent synthetase and ligase family protein] -0.184 -0.031
71 260669_at AT1G19340 [Methyltransferase MT-A70 family protein] -0.182 0.058
72 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 -0.181 -0.053
73 248554_at AT5G50330 [Protein kinase superfamily protein] -0.181 -0.089
74 258261_at AT3G15740 [RING/U-box superfamily protein] -0.177 0.059