4.0:Information of module
treated group
In comparison with Dark 2day ivd help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006820 anion transport BP 1.259e-16
GO:0071705 nitrogen compound transport BP 2.127e-12
GO:0006865 amino acid transport BP 2.584e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 2.024e-21
GO:0006081 cellular aldehyde metabolic process BP 8.160e-21
GO:0006098 pentose-phosphate shunt BP 7.818e-20
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
treated group		 Log2 signal ratio
Dark 2day ivd
1 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 1.048 3.707
2 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.846 1.457
3 256937_at AT3G22620 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.776 5.787
4 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.745 0.525
5 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.698 2.260
6 263228_at AT1G30700 [FAD-binding Berberine family protein] 0.689 1.609
7 249101_at AT5G43580 UPI, UNUSUAL SERINE PROTEASE INHIBITOR 0.676 2.563
8 250798_at AT5G05340 PRX52, peroxidase 52 0.657 2.988
9 259802_at AT1G72260 THI2.1, thionin 2.1, THI2.1.1 0.654 1.273
10 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.643 -2.015
11 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.628 4.122
12 261020_at AT1G26390 [FAD-binding Berberine family protein] 0.613 -1.100
13 249454_at AT5G39520 unknown 0.610 8.078
14 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.603 -3.289
15 258209_at AT3G14060 unknown 0.600 4.168
16 266989_at AT2G39330 JAL23, jacalin-related lectin 23 0.555 -3.818
17 249289_at AT5G41040 ASFT, aliphatic suberin feruloyl-transferase, HHT, hydroxycinnamoyl- CoA:ω-hydroxyacid O-hydroxycinnamoyltransferase, RWP1, REDUCED LEVELS OF WALL-BOUND PHENOLICS 1 0.530 3.367
18 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.526 2.163
19 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 0.473 2.079
20 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.469 2.250
21 248218_at AT5G53710 unknown 0.460 3.832
22 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.456 2.119
23 267168_at AT2G37770 AKR4C9, Aldo-keto reductase family 4 member C9, ChlAKR, Chloroplastic aldo-keto reductase 0.446 -0.198
24 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.427 -0.075
25 260551_at AT2G43510 ATTI1, trypsin inhibitor protein 1, TI1, trypsin inhibitor protein 1 0.427 1.400
26 254042_at AT4G25810 XTH23, xyloglucan endotransglucosylase/hydrolase 23, XTR6, xyloglucan endotransglycosylase 6 0.414 0.007
27 248626_at AT5G48940 [Leucine-rich repeat transmembrane protein kinase family protein] -0.201 -0.488
28 251130_at AT5G01180 AtNPF8.2, ATPTR5, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, NPF8.2, NRT1/ PTR family 8.2, PTR5, peptide transporter 5 -0.174 -1.738
29 257359_x_at AT2G34290 [Protein kinase superfamily protein] -0.171 0.051
30 263733_at AT1G60020 [copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)] -0.169 0.051
31 253971_at AT4G26530 AtFBA5, FBA5, fructose-bisphosphate aldolase 5 -0.162 -5.099
32 245103_at AT2G41590 unknown -0.155 1.732
33 263558_at AT2G16380 [Sec14p-like phosphatidylinositol transfer family protein] -0.153 -0.328
34 246792_at AT5G27290 unknown -0.151 -7.204
35 258422_at AT3G16710 [Pentatricopeptide repeat (PPR) superfamily protein] -0.135 0.112
36 253597_at AT4G30690 [Translation initiation factor 3 protein] -0.128 0.542
37 254518_at AT4G19910 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.127 0.051
38 251627_at AT3G57270 BG1, beta-1,3-glucanase 1 -0.125 -1.167
39 249111_at AT5G43770 [proline-rich family protein] -0.125 0.051
40 257246_at AT3G24130 [Pectin lyase-like superfamily protein] -0.124 0.051
41 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.124 -1.292
42 257995_at AT3G19940 [Major facilitator superfamily protein] -0.123 0.051
43 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 -0.117 -3.682
44 254317_at AT4G22510 unknown -0.117 0.051
45 254506_at AT4G20140 GSO1, GASSHO1 -0.116 -2.223
46 265425_at AT2G20770 GCL2, GCR2-like 2 -0.116 0.131
47 266176_at AT2G02250 AtPP2-B2, phloem protein 2-B2, PP2-B2, phloem protein 2-B2 -0.115 0.051
48 267398_at AT2G44560 AtGH9B11, glycosyl hydrolase 9B11, GH9B11, glycosyl hydrolase 9B11 -0.112 0.051
49 246723_at AT5G29030 [pseudogene] -0.112 0.051
50 245820_at AT1G26320 [Zinc-binding dehydrogenase family protein] -0.111 0.051
51 258969_at AT3G10680 [HSP20-like chaperones superfamily protein] -0.108 -3.618