4.0:Information of module
arr-BA-sample
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044700 single organism signaling BP 1.725e-09
GO:0023052 signaling BP 1.830e-09
GO:0007165 signal transduction BP 5.463e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0000041 transition metal ion transport BP 3.879e-16
GO:0030001 metal ion transport BP 1.099e-13
GO:0006826 iron ion transport BP 3.745e-13
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
arr-BA-sample		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 246522_at AT5G15830 AtbZIP3, basic leucine-zipper 3, bZIP3, basic leucine-zipper 3 0.749 -0.050
2 251072_at AT5G01740 [Nuclear transport factor 2 (NTF2) family protein] 0.641 0.005
3 260462_at AT1G10970 ATZIP4, ZIP4, zinc transporter 4 precursor 0.539 -0.100
4 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.489 0.126
5 249094_at AT5G43890 SUPER1, SUPPRESSOR OF ER 1, YUC5, YUCCA5 0.442 -0.026
6 264636_at AT1G65490 unknown 0.409 -0.041
7 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 0.397 -0.048
8 263738_at AT1G60060 [Serine/threonine-protein kinase WNK (With No Lysine)-related] 0.391 -0.031
9 250823_at AT5G05180 unknown 0.387 0.062
10 257715_at AT3G12750 AtZIP1, ZIP1, zinc transporter 1 precursor 0.384 -0.061
11 245052_at AT2G26440 PME12, pectin methylesterase 12 0.383 0.054
12 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A 0.380 -0.020
13 265573_at AT2G28200 [C2H2-type zinc finger family protein] 0.376 0.010
14 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 0.374 0.002
15 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 0.373 -0.008
16 248037_at AT5G55930 ATOPT1, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, OPT1, oligopeptide transporter 1 0.373 0.169
17 261914_at AT1G65870 [Disease resistance-responsive (dirigent-like protein) family protein] 0.372 -0.055
18 253182_at AT4G35190 LOG5, LONELY GUY 5 0.371 -0.023
19 263632_at AT2G04795 unknown 0.370 -0.017
20 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.366 -0.016
21 248080_at AT5G55380 [MBOAT (membrane bound O-acyl transferase) family protein] 0.359 -0.049
22 248763_at AT5G47550 [Cystatin/monellin superfamily protein] 0.357 -0.024
23 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.357 -0.003
24 245690_at AT5G04230 ATPAL3, PAL3, phenyl alanine ammonia-lyase 3 0.356 -0.022
25 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.346 -0.110
26 263536_at AT2G25000 ATWRKY60, WRKY60, WRKY DNA-binding protein 60 0.323 0.080
27 264626_at AT1G65620 AS2, ASYMMETRIC LEAVES 2 0.322 -0.052
28 263777_at AT2G46450 ATCNGC12, cyclic nucleotide-gated channel 12, CNGC12, cyclic nucleotide-gated channel 12 0.321 0.085
29 266415_at AT2G38530 cdf3, cell growth defect factor-3, LP2, LTP2, lipid transfer protein 2 0.321 0.004
30 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.321 0.002
31 253332_at AT4G33420 [Peroxidase superfamily protein] 0.318 0.027
32 257506_at AT1G29440 SAUR63, SMALL AUXIN UP RNA 63 0.306 -0.205
33 247904_at AT5G57390 AIL5, AINTEGUMENTA-like 5, CHO1, CHOTTO 1, EMK, EMBRYOMAKER, PLT5, PLETHORA 5 0.304 -0.056
34 249806_at AT5G23850 unknown 0.301 -0.026
35 258198_at AT3G14020 NF-YA6, nuclear factor Y, subunit A6 0.299 -0.028
36 251141_at AT5G01075 [Glycosyl hydrolase family 35 protein] 0.295 -0.153
37 265985_at AT2G24220 ATPUP5, purine permease 5, PUP5, purine permease 5 0.290 -0.054
38 261346_at AT1G79720 [Eukaryotic aspartyl protease family protein] 0.289 -0.031
39 265646_at AT2G27360 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.288 0.024
40 251105_at AT5G01730 ATSCAR4, SCAR4, SCAR family protein 4, WAVE3 0.287 0.003
41 252977_at AT4G38560 [Arabidopsis phospholipase-like protein (PEARLI 4) family] 0.278 0.068
42 263693_at AT1G31200 ATPP2-A9, phloem protein 2-A9, PP2-A9, phloem protein 2-A9 0.277 -0.150
43 260199_at AT1G67590 [Remorin family protein] 0.272 -0.114
44 262910_at AT1G59710 unknown 0.269 0.018
45 246310_at AT3G51895 AST12, SULTR3;1, sulfate transporter 3;1 0.266 0.072
46 258677_at AT3G08730 ATPK1, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, ATPK6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ATS6K1, PK1, protein-serine kinase 1, PK6, ROTEIN-SERINE KINASE 6, S6K1, P70 RIBOSOMAL S6 KINASE 0.266 0.027
47 244939_at ATCG00065 RPS12, RIBOSOMAL PROTEIN S12, RPS12A, ribosomal protein S12A 0.266 0.048
48 265771_at AT2G48030 [DNAse I-like superfamily protein] 0.261 -0.080
49 263796_at AT2G24540 AFR, ATTENUATED FAR-RED RESPONSE 0.259 -0.048
50 255443_at AT4G02700 SULTR3;2, sulfate transporter 3;2 0.252 -0.106
51 258204_at AT3G13960 AtGRF5, growth-regulating factor 5, GRF5, growth-regulating factor 5 0.251 -0.090
52 254587_at AT4G19520 [disease resistance protein (TIR-NBS-LRR class) family] 0.250 -0.019
53 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] 0.247 -0.007
54 249059_at AT5G44530 [Subtilase family protein] 0.245 0.022
55 258432_at AT3G16570 ATRALF23, ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, RALF23, rapid alkalinization factor 23 0.238 -0.071
56 258890_at AT3G05690 ATHAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, HAP2B, HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 2B, NF-YA2, nuclear factor Y, subunit A2, UNE8, UNFERTILIZED EMBRYO SAC 8 0.236 -0.050
57 260296_at AT1G63750 [Disease resistance protein (TIR-NBS-LRR class) family] 0.234 0.104
58 250374_at AT5G11530 EMF1, embryonic flower 1 0.234 0.027
59 267538_at AT2G41870 [Remorin family protein] 0.231 -0.021
60 264912_at AT1G60750 [NAD(P)-linked oxidoreductase superfamily protein] 0.229 0.017
61 252378_at AT3G47570 [Leucine-rich repeat protein kinase family protein] 0.228 0.034
62 264436_at AT1G10370 ATGSTU17, GLUTATHIONE S-TRANSFERASE TAU 17, ERD9, EARLY-RESPONSIVE TO DEHYDRATION 9, GST30, GLUTATHIONE S-TRANSFERASE 30, GST30B, GLUTATHIONE S-TRANSFERASE 30B, GSTU17, GLUTATHIONE S-TRANSFERASE U17 0.226 0.086
63 260414_at AT1G69850 AIT1, ABA-importing transporter 1, AtNPF4.6, ATNRT1:2, nitrate transporter 1:2, NPF4.6, NRT1/ PTR family 4.6, NRT1.2, NRT1:2, nitrate transporter 1:2, NTL1 0.225 0.002
64 247883_at AT5G57790 unknown 0.221 -0.099
65 265809_at AT2G18100 unknown 0.221 -0.043
66 262768_at AT1G12990 [beta-1,4-N-acetylglucosaminyltransferase family protein] 0.221 -0.018
67 252600_at AT3G45000 VPS24, VPS24.2 0.221 0.013
68 253886_at AT4G27710 CYP709B3, cytochrome P450, family 709, subfamily B, polypeptide 3 0.220 0.035
69 260979_at AT1G53510 ATMPK18, ARABIDOPSIS THALIANA MAP KINASE 18, MPK18, mitogen-activated protein kinase 18 0.219 0.038
70 265884_at AT2G42320 [nucleolar protein gar2-related] 0.217 0.041
71 262563_at AT1G34210 ATSERK2, SERK2, somatic embryogenesis receptor-like kinase 2 0.216 -0.033
72 245029_at AT2G26580 YAB5, YABBY5 0.216 -0.131
73 261717_at AT1G18400 BEE1, BR enhanced expression 1 0.215 -0.155
74 265253_at AT2G02020 AtNPF8.4, AtPTR4, NPF8.4, NRT1/ PTR family 8.4, PTR4, peptide transporter 4 0.214 -0.050
75 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 0.214 -0.078
76 250582_at AT5G07580 [Integrase-type DNA-binding superfamily protein] 0.213 -0.079
77 246939_at AT5G25390 SHN3, shine3 0.212 -0.028
78 249962_at AT5G18990 [Pectin lyase-like superfamily protein] 0.212 -0.105
79 248706_at AT5G48530 unknown 0.210 -0.034
80 254573_at AT4G19420 [Pectinacetylesterase family protein] 0.210 -0.022
81 250351_at AT5G12030 AT-HSP17.6A, heat shock protein 17.6A, HSP17.6, HEAT SHOCK PROTEIN 17.6, HSP17.6A, heat shock protein 17.6A -0.982 0.887
82 264470_at AT1G67110 CYP735A2, cytochrome P450, family 735, subfamily A, polypeptide 2 -0.857 -0.034
83 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.857 0.972
84 259264_at AT3G01260 [Galactose mutarotase-like superfamily protein] -0.849 -0.001
85 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.815 -0.029
86 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 -0.797 0.912
87 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein -0.769 0.783
88 255934_at AT1G12740 CYP87A2, cytochrome P450, family 87, subfamily A, polypeptide 2 -0.763 -0.010
89 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.759 0.502
90 260881_at AT1G21550 [Calcium-binding EF-hand family protein] -0.723 0.050
91 245267_at AT4G14060 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.713 0.028
92 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.708 -0.170
93 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -0.691 -0.027
94 264374_at AT2G25180 ARR12, response regulator 12, RR12, response regulator 12 -0.675 0.025
95 262608_at AT1G14120 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.673 -0.050
96 248727_at AT5G47990 CYP705A5, cytochrome P450, family 705, subfamily A, polypeptide 5, THAD, THALIAN-DIOL DESATURASE, THAD1, THALIAN-DIOL DESATURASE -0.673 -0.045
97 266900_at AT2G34610 unknown -0.670 0.000
98 262838_at AT1G14960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.668 -0.010
99 253500_at AT4G31920 ARR10, response regulator 10, RR10, response regulator 10 -0.666 0.107
100 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 -0.664 -0.064
101 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.657 0.056
102 261956_at AT1G64590 [NAD(P)-binding Rossmann-fold superfamily protein] -0.656 -0.017
103 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -0.653 0.005
104 252536_at AT3G45700 [Major facilitator superfamily protein] -0.652 -0.013
105 246375_at AT1G51830 [Leucine-rich repeat protein kinase family protein] -0.643 0.035
106 255385_at AT4G03610 [Metallo-hydrolase/oxidoreductase superfamily protein] -0.637 -0.028
107 255266_at AT4G05200 CRK25, cysteine-rich RLK (RECEPTOR-like protein kinase) 25 -0.617 -0.023
108 252537_at AT3G45710 [Major facilitator superfamily protein] -0.616 0.059
109 252594_at AT3G45680 [Major facilitator superfamily protein] -0.605 0.032
110 254839_at AT4G12400 Hop3, Hop3 -0.604 0.646
111 247469_at AT5G62165 AGL42, AGAMOUS-like 42, FYF, FOREVER YOUNG FLOWER -0.599 -0.105
112 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.597 0.046
113 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] -0.593 0.682
114 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -0.569 -0.041
115 254632_at AT4G18630 unknown -0.552 0.110
116 257774_at AT3G29250 AtSDR4, SDR4, short-chain dehydrogenase reductase 4 -0.550 0.082
117 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 -0.545 0.949
118 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 -0.545 0.051
119 252515_at AT3G46230 ATHSP17.4, ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, HSP17.4, heat shock protein 17.4 -0.541 0.616
120 258851_at AT3G03190 ATGSTF11, glutathione S-transferase F11, ATGSTF6, ARABIDOPSIS GLUTATHIONE-S-TRANSFERASE 6, GSTF11, glutathione S-transferase F11 -0.539 -0.063
121 253696_at AT4G29740 ATCKX4, CKX4, cytokinin oxidase 4 -0.529 -0.014
122 266290_at AT2G29490 ATGSTU1, glutathione S-transferase TAU 1, GST19, GLUTATHIONE S-TRANSFERASE 19, GSTU1, glutathione S-transferase TAU 1 -0.521 0.661
123 259036_at AT3G09220 LAC7, laccase 7 -0.519 0.069
124 263150_at AT1G54050 [HSP20-like chaperones superfamily protein] -0.518 -0.055
125 257467_at AT1G31320 LBD4, LOB domain-containing protein 4 -0.501 -0.105
126 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] -0.494 0.384
127 251545_at AT3G58810 ATMTP3, ARABIDOPSIS METAL TOLERANCE PROTEIN 3, ATMTPA2, MTP3, METAL TOLERANCE PROTEIN 3, MTPA2, metal tolerance protein A2 -0.491 0.055
128 261838_at AT1G16030 Hsp70b, heat shock protein 70B -0.491 0.113
129 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 -0.486 -0.071
130 246418_at AT5G16960 [Zinc-binding dehydrogenase family protein] -0.486 0.088
131 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] -0.483 0.004
132 258901_at AT3G05640 [Protein phosphatase 2C family protein] -0.479 -0.034
133 259576_at AT1G35330 [RING/U-box superfamily protein] -0.478 -0.021
134 252501_at AT3G46880 unknown -0.477 -0.167
135 253073_at AT4G37410 CYP81F4, cytochrome P450, family 81, subfamily F, polypeptide 4 -0.471 0.013
136 260146_at AT1G52770 [Phototropic-responsive NPH3 family protein] -0.470 0.002
137 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] -0.458 -0.044
138 245440_at AT4G16680 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.447 0.061
139 266784_at AT2G28960 [Leucine-rich repeat protein kinase family protein] -0.441 -0.085
140 245737_at AT1G44160 [HSP40/DnaJ peptide-binding protein] -0.432 -0.045
141 245970_at AT5G20710 BGAL7, beta-galactosidase 7 -0.431 0.009
142 257946_at AT3G21710 unknown -0.430 -0.013
143 261449_at AT1G21120 IGMT2, indole glucosinolate O-methyltransferase 2 -0.429 0.057
144 261090_at AT1G07560 [Leucine-rich repeat protein kinase family protein] -0.419 0.045
145 263673_at AT2G04800 unknown -0.417 -0.118
146 262211_at AT1G74930 ORA47 -0.403 -0.075
147 266625_at AT2G35380 [Peroxidase superfamily protein] -0.402 0.032
148 267391_at AT2G44480 BGLU17, beta glucosidase 17 -0.394 -0.020
149 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.392 -0.027
150 267226_at AT2G44010 unknown -0.386 0.089
151 260074_at AT1G73640 AtRABA6a, RAB GTPase homolog A6A, RABA6a, RAB GTPase homolog A6A -0.381 -0.060
152 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.373 0.023
153 259443_at AT1G02360 [Chitinase family protein] -0.373 0.080
154 252568_at AT3G45410 LecRK-I.3, L-type lectin receptor kinase I.3 -0.372 0.050
155 262260_at AT1G70850 MLP34, MLP-like protein 34 -0.362 0.011
156 254092_at AT4G25090 [Riboflavin synthase-like superfamily protein] -0.357 -0.008
157 252488_at AT3G46700 [UDP-Glycosyltransferase superfamily protein] -0.353 -0.010
158 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 -0.352 0.246
159 247553_at AT5G60910 AGL8, AGAMOUS-like 8, FUL, FRUITFULL -0.349 -0.099