4.0:Information of module
Col 1d
In comparison with coi1-16 ein2 sid2 ctrl help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 6.461e-26
GO:0010243 response to organonitrogen compound BP 2.387e-25
GO:0009719 response to endogenous stimulus BP 1.235e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009086 methionine biosynthetic process BP 5.656e-03
GO:0009067 aspartate family amino acid biosynthetic... BP 5.834e-03
GO:0006555 methionine metabolic process BP 6.842e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col 1d		 Log2 signal ratio
coi1-16 ein2 sid2 ctrl
1 252739_at AT3G43250 unknown 1.226 -7.376
2 258383_at AT3G15440 unknown 1.179 0.099
3 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 1.058 -6.856
4 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 1.009 -0.310
5 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.981 -0.869
6 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.943 -2.840
7 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.943 -7.500
8 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 0.936 0.099
9 266455_at AT2G22760 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.912 -4.023
10 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.909 -3.019
11 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.873 -3.827
12 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.850 -4.211
13 264202_at AT1G22810 [Integrase-type DNA-binding superfamily protein] 0.839 -2.482
14 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.813 0.773
15 259946_at AT1G71450 [Integrase-type DNA-binding superfamily protein] 0.807 -0.274
16 245677_at AT1G56660 unknown 0.771 -0.723
17 251603_at AT3G57760 [Protein kinase superfamily protein] 0.769 -2.355
18 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.762 -0.241
19 264718_at AT1G70130 LecRK-V.2, L-type lectin receptor kinase V.2 0.762 -5.804
20 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.740 0.064
21 258016_at AT3G19350 MPC, maternally expressed pab C-terminal 0.728 -0.833
22 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.720 -6.956
23 245636_at AT1G25240 [ENTH/VHS/GAT family protein] 0.713 0.099
24 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.698 -2.708
25 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.690 -5.145
26 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] 0.689 -0.615
27 262813_at AT1G11670 [MATE efflux family protein] 0.670 -1.221
28 256884_at AT3G15200 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.666 -1.679
29 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.653 -6.284
30 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.653 -4.464
31 247922_at AT5G57500 [Galactosyltransferase family protein] 0.648 -3.557
32 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] 0.636 -3.879
33 253679_at AT4G29610 [Cytidine/deoxycytidylate deaminase family protein] 0.628 0.982
34 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.624 -4.765
35 265732_at AT2G01300 unknown 0.620 -1.949
36 264862_at AT1G24330 [ARM repeat superfamily protein] 0.620 0.693
37 245826_at AT1G57850 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.615 0.099
38 261101_at AT1G63030 ddf2, DWARF AND DELAYED FLOWERING 2 0.612 0.099
39 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.607 -2.995
40 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 0.605 -2.095
41 266232_at AT2G02310 AtPP2-B6, phloem protein 2-B6, PP2-B6, phloem protein 2-B6 0.603 -5.261
42 245635_at AT1G25250 AtIDD16, indeterminate(ID)-domain 16, IDD16, indeterminate(ID)-domain 16 0.592 0.890
43 252944_at AT4G39320 [microtubule-associated protein-related] 0.592 -0.135
44 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.590 0.102
45 260628_at AT1G62320 [ERD (early-responsive to dehydration stress) family protein] 0.589 -3.506
46 249540_at AT5G38120 4CL8 0.586 0.198
47 251114_at AT5G01380 [Homeodomain-like superfamily protein] 0.585 -6.171
48 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.577 -1.988
49 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.577 -5.821
50 251494_at AT3G59350 [Protein kinase superfamily protein] 0.570 -2.255
51 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.570 2.382
52 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 0.565 -2.243
53 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 0.564 -5.891
54 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.564 -5.950
55 263465_at AT2G31940 unknown 0.556 0.486
56 254293_at AT4G23060 IQD22, IQ-domain 22 0.555 -0.694
57 254605_at AT4G18950 [Integrin-linked protein kinase family] 0.549 -2.185
58 253813_at AT4G28150 unknown 0.549 0.486
59 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.548 -1.368
60 260763_at AT1G49220 [RING/U-box superfamily protein] 0.547 0.104
61 257670_at AT3G20340 unknown 0.540 -1.715
62 251925_at AT3G54000 unknown 0.539 0.964
63 247030_at AT5G67210 IRX15-L, IRX15-LIKE 0.537 -1.407
64 256285_at AT3G12510 [MADS-box family protein] 0.531 -0.924
65 256715_at AT2G34090 MEE18, maternal effect embryo arrest 18 0.524 0.321
66 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 0.523 -3.637
67 259076_at AT3G02140 AFP4, ABI FIVE BINDING PROTEIN 4, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2 0.516 -3.840
68 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.515 -0.364
69 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.514 -1.073
70 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 0.509 -2.217
71 262677_at AT1G75860 unknown 0.509 -1.263
72 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.504 -4.405
73 257466_at AT1G62840 unknown 0.501 -2.300
74 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 0.495 -5.588
75 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.494 -8.584
76 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.491 -1.785
77 267409_at AT2G34910 unknown 0.490 -0.536
78 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.489 -1.731
79 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.487 -0.583
80 248870_at AT5G46710 [PLATZ transcription factor family protein] 0.487 -2.125
81 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.486 -4.411
82 248100_at AT5G55180 [O-Glycosyl hydrolases family 17 protein] 0.484 -0.526
83 253165_at AT4G35320 unknown 0.482 2.316
84 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.476 -1.268
85 253737_at AT4G28703 [RmlC-like cupins superfamily protein] 0.474 -2.386
86 254575_at AT4G19460 [UDP-Glycosyltransferase superfamily protein] 0.472 -3.370
87 245563_at AT4G14580 CIPK4, CBL-interacting protein kinase 4, SnRK3.3, SNF1-RELATED PROTEIN KINASE 3.3 0.467 -1.085
88 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.466 -0.846
89 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.464 -2.408
90 248358_at AT5G52400 CYP715A1, cytochrome P450, family 715, subfamily A, polypeptide 1 0.463 -7.066
91 260335_at AT1G74000 SS3, strictosidine synthase 3 0.460 -0.589
92 253064_at AT4G37730 AtbZIP7, basic leucine-zipper 7, bZIP7, basic leucine-zipper 7 0.455 -0.969
93 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.453 -2.149
94 248814_at AT5G46910 [Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein] 0.451 -2.395
95 262131_at AT1G02900 ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALF1, rapid alkalinization factor 1, RALFL1, RALF-LIKE 1 0.449 -1.165
96 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.449 -1.441
97 253717_at AT4G29440 [Regulator of Vps4 activity in the MVB pathway protein] 0.444 -1.299
98 265648_at AT2G27500 [Glycosyl hydrolase superfamily protein] 0.439 -3.362
99 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.436 -4.295
100 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 0.436 -7.592
101 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.436 -6.195
102 253891_at AT4G27720 [Major facilitator superfamily protein] 0.435 0.799
103 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.433 -7.668
104 248581_at AT5G49900 [Beta-glucosidase, GBA2 type family protein] 0.430 -1.129
105 246235_at AT4G36830 HOS3-1 0.424 1.586
106 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.606 -2.998
107 253859_at AT4G27657 unknown -0.588 -1.123
108 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.532 -1.861
109 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.493 1.461
110 250613_at AT5G07240 IQD24, IQ-domain 24 -0.485 1.615
111 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.468 0.969
112 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.454 2.674
113 259143_at AT3G10190 [Calcium-binding EF-hand family protein] -0.439 2.058
114 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.435 0.516
115 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.423 -2.035
116 251665_at AT3G57040 ARR9, response regulator 9, ATRR4, RESPONSE REGULATOR 4 -0.410 1.724
117 262552_at AT1G31350 KUF1, KAR-UP F-box 1 -0.391 -0.097
118 267538_at AT2G41870 [Remorin family protein] -0.381 1.359
119 254803_at AT4G13100 [RING/U-box superfamily protein] -0.380 1.113
120 245776_at AT1G30260 unknown -0.380 0.489
121 245074_at AT2G23200 [Protein kinase superfamily protein] -0.350 -0.669
122 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.349 -1.310
123 248177_at AT5G54630 [zinc finger protein-related] -0.346 1.784
124 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.343 -0.450
125 256874_at AT3G26320 CYP71B36, cytochrome P450, family 71, subfamily B, polypeptide 36 -0.343 -0.517
126 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.339 1.512
127 250735_at AT5G06280 unknown -0.334 0.495
128 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.332 1.772
129 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.325 0.176
130 250572_at AT5G08210 MIR834A, microRNA834A -0.324 -0.171
131 257209_at AT3G14920 [Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein] -0.321 0.123
132 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.321 2.477
133 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.320 1.400
134 261646_at AT1G27690 unknown -0.319 0.709
135 265902_at AT2G25590 [Plant Tudor-like protein] -0.315 0.298
136 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.307 -0.112
137 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.300 -0.839
138 263829_at AT2G40435 unknown -0.298 2.153
139 249221_at AT5G42440 [Protein kinase superfamily protein] -0.296 -2.419
140 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 -0.292 0.720
141 263737_at AT1G60010 unknown -0.289 1.301
142 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.288 0.691
143 261488_at AT1G14345 [NAD(P)-linked oxidoreductase superfamily protein] -0.287 1.678
144 252036_at AT3G52070 unknown -0.282 1.041
145 262049_at AT1G80180 unknown -0.279 -0.653
146 266781_at AT2G28940 [Protein kinase superfamily protein] -0.278 -2.247
147 261888_at AT1G80800 [pseudogene] -0.277 1.011
148 248046_at AT5G56040 SKM2, STERILITY-REGULATING KINASE MEMBER 2 -0.275 0.756
149 245901_at AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 -0.275 0.944
150 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.272 -0.200
151 267084_at AT2G41180 SIB2, sigma factor binding protein 2 -0.272 -1.225
152 265831_at AT2G14460 unknown -0.271 -0.002
153 250742_at AT5G05800 unknown -0.271 0.438
154 264769_at AT1G61350 [ARM repeat superfamily protein] -0.270 0.251
155 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.270 2.010
156 248584_at AT5G49960 unknown -0.265 0.864
157 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 -0.265 1.547
158 257860_at AT3G13062 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.265 0.818
159 248429_at AT5G51770 [Protein kinase superfamily protein] -0.264 -1.724
160 245830_at AT1G57790 [F-box family protein] -0.260 1.257
161 257745_at AT3G29240 unknown -0.254 -0.490
162 254851_at AT4G12010 [Disease resistance protein (TIR-NBS-LRR class) family] -0.248 -1.704
163 250981_at AT5G03140 LecRK-VIII.2, L-type lectin receptor kinase VIII.2 -0.248 1.442
164 254151_at AT4G24390 AFB4, auxin signaling F-box 4 -0.247 -0.113
165 261294_at AT1G48430 [Dihydroxyacetone kinase] -0.247 -0.919
166 251931_at AT3G53950 [glyoxal oxidase-related protein] -0.246 0.833
167 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.243 0.097
168 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.242 0.159
169 250603_at AT5G07820 [Plant calmodulin-binding protein-related] -0.241 -0.426
170 254870_at AT4G11900 [S-locus lectin protein kinase family protein] -0.238 0.317
171 248908_at AT5G45800 MEE62, maternal effect embryo arrest 62 -0.238 0.059
172 255285_at AT4G04630 unknown -0.238 0.650
173 246901_at AT5G25630 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.238 1.328
174 261280_at AT1G05860 unknown -0.232 0.800
175 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 -0.232 0.826
176 246951_at AT5G04880 [expressed protein] -0.227 0.913
177 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 -0.226 -0.702
178 247169_at AT5G65520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.225 -0.154
179 257852_at AT3G12950 [Trypsin family protein] -0.225 0.179
180 254524_at AT4G20000 [VQ motif-containing protein] -0.225 -5.914
181 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.225 1.102
182 257181_at AT3G13190 unknown -0.224 0.460
183 255588_at AT4G01570 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.224 0.891
184 256764_at AT3G29310 [calmodulin-binding protein-related] -0.224 -0.873
185 265726_at AT2G32010 CVL1, CVP2 like 1 -0.223 1.854
186 250040_at AT5G18390 [Pentatricopeptide repeat (PPR) superfamily protein] -0.222 0.378
187 247187_at AT5G65490 unknown -0.221 0.293
188 255829_at AT2G40540 ATKT2, ATKUP2, KT2, potassium transporter 2, KUP2, SHY3, TRK2 -0.221 1.061
189 255224_at AT4G05400 [copper ion binding] -0.219 0.508
190 257722_at AT3G18490 ASPG1, ASPARTIC PROTEASE IN GUARD CELL 1 -0.214 1.855
191 250017_at AT5G18140 DJC69, DNA J protein A69 -0.213 0.938
192 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.210 -0.928
193 246949_at AT5G25140 CYP71B13, cytochrome P450, family 71, subfamily B, polypeptide 13 -0.210 1.434
194 253686_at AT4G29750 [CRS1 / YhbY (CRM) domain-containing protein] -0.210 0.195
195 258906_at AT3G06380 ATTLP9, tubby-like protein 9, TLP9, tubby-like protein 9 -0.209 -0.408
196 251415_at AT3G60380 unknown -0.207 0.962
197 258882_at AT3G06330 [RING/U-box superfamily protein] -0.207 -0.525
198 259994_at AT1G68130 AtIDD14, indeterminate(ID)-domain 14, IDD14, indeterminate(ID)-domain 14, IDD14alpha, IDD14beta -0.207 0.823
199 253228_at AT4G34630 unknown -0.206 0.258
200 263085_at AT2G16090 ARI2, ARIADNE 2, ATARI2, ARABIDOPSIS ARIADNE 2 -0.205 0.264
201 257950_at AT3G21780 UGT71B6, UDP-glucosyl transferase 71B6 -0.204 -5.733
202 266962_at AT2G39435 TRM18, TON1 Recruiting Motif 18 -0.204 -1.010
203 252424_at AT3G47610 [transcription regulators] -0.202 -0.001
204 262705_at AT1G16260 [Wall-associated kinase family protein] -0.202 -0.449
205 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] -0.200 -2.782
206 253056_at AT4G37650 SGR7, SHOOT GRAVITROPISM 7, SHR, SHORT ROOT -0.200 0.429
207 263868_at AT2G36840 ACR10, ACT domain repeats 10 -0.199 0.005
208 245761_at AT1G66890 unknown -0.199 0.747
209 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.198 -1.279