4.0:Information of module
Col 1d
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 6.461e-26
GO:0010243 response to organonitrogen compound BP 2.387e-25
GO:0009719 response to endogenous stimulus BP 1.235e-20
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009086 methionine biosynthetic process BP 5.656e-03
GO:0009067 aspartate family amino acid biosynthetic... BP 5.834e-03
GO:0006555 methionine metabolic process BP 6.842e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Col 1d		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 252739_at AT3G43250 unknown 1.226 -1.691
2 258383_at AT3G15440 unknown 1.179 -1.051
3 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 1.058 0.813
4 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 1.009 -0.584
5 253799_at AT4G28140 [Integrase-type DNA-binding superfamily protein] 0.981 -1.337
6 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.943 0.061
7 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.943 -0.615
8 262307_at AT1G71000 [Chaperone DnaJ-domain superfamily protein] 0.936 -0.159
9 266455_at AT2G22760 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.912 0.057
10 258516_at AT3G06490 AtMYB108, myb domain protein 108, BOS1, BOTRYTIS-SUSCEPTIBLE1, MYB108, myb domain protein 108 0.909 -1.219
11 251950_at AT3G53600 [C2H2-type zinc finger family protein] 0.873 -1.255
12 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.850 0.331
13 264202_at AT1G22810 [Integrase-type DNA-binding superfamily protein] 0.839 -1.213
14 266875_at AT2G44800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.813 -0.759
15 259946_at AT1G71450 [Integrase-type DNA-binding superfamily protein] 0.807 -0.467
16 245677_at AT1G56660 unknown 0.771 0.205
17 251603_at AT3G57760 [Protein kinase superfamily protein] 0.769 -0.801
18 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.762 1.084
19 264718_at AT1G70130 LecRK-V.2, L-type lectin receptor kinase V.2 0.762 0.007
20 261187_at AT1G32860 [Glycosyl hydrolase superfamily protein] 0.740 0.541
21 258016_at AT3G19350 MPC, maternally expressed pab C-terminal 0.728 -1.102
22 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.720 -0.179
23 245636_at AT1G25240 [ENTH/VHS/GAT family protein] 0.713 -0.713
24 267493_at AT2G30400 ATOFP2, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, OFP2, ovate family protein 2 0.698 -0.817
25 254314_at AT4G22470 [protease inhibitor/seed storage/lipid transfer protein (LTP) family protein] 0.690 0.081
26 248502_at AT5G50450 [HCP-like superfamily protein with MYND-type zinc finger] 0.689 -0.369
27 262813_at AT1G11670 [MATE efflux family protein] 0.670 0.362
28 256884_at AT3G15200 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.666 0.404
29 266992_at AT2G39200 ATMLO12, MILDEW RESISTANCE LOCUS O 12, MLO12, MILDEW RESISTANCE LOCUS O 12 0.653 -0.434
30 262756_at AT1G16370 ATOCT6, ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, OCT6, organic cation/carnitine transporter 6 0.653 -0.491
31 247922_at AT5G57500 [Galactosyltransferase family protein] 0.648 0.220
32 258805_at AT3G04010 [O-Glycosyl hydrolases family 17 protein] 0.636 -0.752
33 253679_at AT4G29610 [Cytidine/deoxycytidylate deaminase family protein] 0.628 -0.676
34 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.624 0.332
35 265732_at AT2G01300 unknown 0.620 -0.594
36 264862_at AT1G24330 [ARM repeat superfamily protein] 0.620 -1.205
37 245826_at AT1G57850 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.615 -1.023
38 261101_at AT1G63030 ddf2, DWARF AND DELAYED FLOWERING 2 0.612 -0.419
39 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.607 0.218
40 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 0.605 0.230
41 266232_at AT2G02310 AtPP2-B6, phloem protein 2-B6, PP2-B6, phloem protein 2-B6 0.603 -0.880
42 245635_at AT1G25250 AtIDD16, indeterminate(ID)-domain 16, IDD16, indeterminate(ID)-domain 16 0.592 -0.533
43 252944_at AT4G39320 [microtubule-associated protein-related] 0.592 -1.324
44 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] 0.590 -0.024
45 260628_at AT1G62320 [ERD (early-responsive to dehydration stress) family protein] 0.589 -0.232
46 249540_at AT5G38120 4CL8 0.586 0.003
47 251114_at AT5G01380 [Homeodomain-like superfamily protein] 0.585 -1.709
48 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.577 0.248
49 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] 0.577 -0.730
50 251494_at AT3G59350 [Protein kinase superfamily protein] 0.570 0.672
51 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.570 -0.394
52 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 0.565 0.597
53 263836_at AT2G40330 PYL6, PYR1-like 6, RCAR9, regulatory components of ABA receptor 9 0.564 0.320
54 259445_at AT1G02400 ATGA2OX4, Arabidopsis thaliana gibberellin 2-oxidase 4, ATGA2OX6, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, DTA1, DOWNSTREAM TARGET OF AGL15 1, GA2OX6, gibberellin 2-oxidase 6 0.564 -0.577
55 263465_at AT2G31940 unknown 0.556 -0.484
56 254293_at AT4G23060 IQD22, IQ-domain 22 0.555 0.397
57 254605_at AT4G18950 [Integrin-linked protein kinase family] 0.549 -0.546
58 253813_at AT4G28150 unknown 0.549 -0.811
59 248793_at AT5G47240 atnudt8, nudix hydrolase homolog 8, NUDT8, nudix hydrolase homolog 8 0.548 -0.882
60 260763_at AT1G49220 [RING/U-box superfamily protein] 0.547 -1.052
61 257670_at AT3G20340 unknown 0.540 -0.492
62 251925_at AT3G54000 unknown 0.539 0.759
63 247030_at AT5G67210 IRX15-L, IRX15-LIKE 0.537 0.589
64 256285_at AT3G12510 [MADS-box family protein] 0.531 0.890
65 256715_at AT2G34090 MEE18, maternal effect embryo arrest 18 0.524 0.551
66 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 0.523 0.259
67 259076_at AT3G02140 AFP4, ABI FIVE BINDING PROTEIN 4, TMAC2, TWO OR MORE ABRES-CONTAINING GENE 2 0.516 0.558
68 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] 0.515 -0.148
69 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.514 1.214
70 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 0.509 0.208
71 262677_at AT1G75860 unknown 0.509 1.038
72 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.504 0.476
73 257466_at AT1G62840 unknown 0.501 -0.748
74 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 0.495 0.190
75 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.494 -0.002
76 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.491 -0.242
77 267409_at AT2G34910 unknown 0.490 1.098
78 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.489 -0.099
79 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.487 0.580
80 248870_at AT5G46710 [PLATZ transcription factor family protein] 0.487 -0.424
81 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.486 -0.637
82 248100_at AT5G55180 [O-Glycosyl hydrolases family 17 protein] 0.484 0.171
83 253165_at AT4G35320 unknown 0.482 -0.050
84 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] 0.476 -0.203
85 253737_at AT4G28703 [RmlC-like cupins superfamily protein] 0.474 -1.032
86 254575_at AT4G19460 [UDP-Glycosyltransferase superfamily protein] 0.472 -0.390
87 245563_at AT4G14580 CIPK4, CBL-interacting protein kinase 4, SnRK3.3, SNF1-RELATED PROTEIN KINASE 3.3 0.467 0.179
88 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.466 0.378
89 253614_at AT4G30350 SMXL2, SMAX1-like 2 0.464 0.049
90 248358_at AT5G52400 CYP715A1, cytochrome P450, family 715, subfamily A, polypeptide 1 0.463 -0.869
91 260335_at AT1G74000 SS3, strictosidine synthase 3 0.460 -0.449
92 253064_at AT4G37730 AtbZIP7, basic leucine-zipper 7, bZIP7, basic leucine-zipper 7 0.455 -1.097
93 256221_at AT1G56300 [Chaperone DnaJ-domain superfamily protein] 0.453 0.002
94 248814_at AT5G46910 [Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein] 0.451 0.049
95 262131_at AT1G02900 ATRALF1, RAPID ALKALINIZATION FACTOR 1, RALF1, rapid alkalinization factor 1, RALFL1, RALF-LIKE 1 0.449 1.353
96 267008_at AT2G39350 ABCG1, ATP-binding cassette G1 0.449 -0.180
97 253717_at AT4G29440 [Regulator of Vps4 activity in the MVB pathway protein] 0.444 0.182
98 265648_at AT2G27500 [Glycosyl hydrolase superfamily protein] 0.439 0.633
99 249527_at AT5G38710 [Methylenetetrahydrofolate reductase family protein] 0.436 -0.325
100 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 0.436 -0.344
101 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.436 0.072
102 253891_at AT4G27720 [Major facilitator superfamily protein] 0.435 0.879
103 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.433 -0.322
104 248581_at AT5G49900 [Beta-glucosidase, GBA2 type family protein] 0.430 -1.010
105 246235_at AT4G36830 HOS3-1 0.424 0.172
106 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.606 -0.209
107 253859_at AT4G27657 unknown -0.588 0.204
108 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.532 -0.408
109 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.493 0.708
110 250613_at AT5G07240 IQD24, IQ-domain 24 -0.485 -0.087
111 256427_at AT3G11090 LBD21, LOB domain-containing protein 21 -0.468 0.022
112 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.454 0.133
113 259143_at AT3G10190 [Calcium-binding EF-hand family protein] -0.439 0.432
114 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 -0.435 0.282
115 259730_at AT1G77660 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.423 -0.368
116 251665_at AT3G57040 ARR9, response regulator 9, ATRR4, RESPONSE REGULATOR 4 -0.410 0.082
117 262552_at AT1G31350 KUF1, KAR-UP F-box 1 -0.391 -1.049
118 267538_at AT2G41870 [Remorin family protein] -0.381 -0.311
119 254803_at AT4G13100 [RING/U-box superfamily protein] -0.380 0.320
120 245776_at AT1G30260 unknown -0.380 -0.878
121 245074_at AT2G23200 [Protein kinase superfamily protein] -0.350 -0.014
122 247618_at AT5G60280 LecRK-I.8, L-type lectin receptor kinase I.8 -0.349 -0.305
123 248177_at AT5G54630 [zinc finger protein-related] -0.346 0.674
124 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 -0.343 -1.286
125 256874_at AT3G26320 CYP71B36, cytochrome P450, family 71, subfamily B, polypeptide 36 -0.343 -0.099
126 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.339 -0.595
127 250735_at AT5G06280 unknown -0.334 0.521
128 266300_at AT2G01420 ATPIN4, ARABIDOPSIS PIN-FORMED 4, PIN4, PIN-FORMED 4 -0.332 0.434
129 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.325 0.263
130 250572_at AT5G08210 MIR834A, microRNA834A -0.324 -0.663
131 257209_at AT3G14920 [Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein] -0.321 1.144
132 254564_at AT4G19170 CCD4, carotenoid cleavage dioxygenase 4, NCED4, nine-cis-epoxycarotenoid dioxygenase 4 -0.321 -0.423
133 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.320 0.294
134 261646_at AT1G27690 unknown -0.319 -0.431
135 265902_at AT2G25590 [Plant Tudor-like protein] -0.315 -0.409
136 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.307 -0.691
137 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.300 0.170
138 263829_at AT2G40435 unknown -0.298 0.501
139 249221_at AT5G42440 [Protein kinase superfamily protein] -0.296 -0.318
140 246518_at AT5G15770 AtGNA1, glucose-6-phosphate acetyltransferase 1, GNA1, glucose-6-phosphate acetyltransferase 1 -0.292 0.086
141 263737_at AT1G60010 unknown -0.289 -0.108
142 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.288 0.115
143 261488_at AT1G14345 [NAD(P)-linked oxidoreductase superfamily protein] -0.287 0.851
144 252036_at AT3G52070 unknown -0.282 -0.466
145 262049_at AT1G80180 unknown -0.279 -0.183
146 266781_at AT2G28940 [Protein kinase superfamily protein] -0.278 0.139
147 261888_at AT1G80800 [pseudogene] -0.277 0.154
148 248046_at AT5G56040 SKM2, STERILITY-REGULATING KINASE MEMBER 2 -0.275 -0.079
149 245901_at AT5G11060 KNAT4, KNOTTED1-like homeobox gene 4 -0.275 0.232
150 245431_at AT4G17080 [Histone H3 K4-specific methyltransferase SET7/9 family protein] -0.272 0.333
151 267084_at AT2G41180 SIB2, sigma factor binding protein 2 -0.272 -0.066
152 265831_at AT2G14460 unknown -0.271 0.822
153 250742_at AT5G05800 unknown -0.271 -0.259
154 264769_at AT1G61350 [ARM repeat superfamily protein] -0.270 0.091
155 247980_at AT5G56860 GATA21, GATA TRANSCRIPTION FACTOR 21, GNC, GATA, nitrate-inducible, carbon metabolism-involved -0.270 -0.340
156 248584_at AT5G49960 unknown -0.265 -0.609
157 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 -0.265 -1.213
158 257860_at AT3G13062 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.265 0.550
159 248429_at AT5G51770 [Protein kinase superfamily protein] -0.264 0.100
160 245830_at AT1G57790 [F-box family protein] -0.260 -0.434
161 257745_at AT3G29240 unknown -0.254 0.358
162 254851_at AT4G12010 [Disease resistance protein (TIR-NBS-LRR class) family] -0.248 -0.719
163 250981_at AT5G03140 LecRK-VIII.2, L-type lectin receptor kinase VIII.2 -0.248 0.153
164 254151_at AT4G24390 AFB4, auxin signaling F-box 4 -0.247 0.479
165 261294_at AT1G48430 [Dihydroxyacetone kinase] -0.247 -0.029
166 251931_at AT3G53950 [glyoxal oxidase-related protein] -0.246 0.380
167 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.243 0.653
168 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.242 -1.093
169 250603_at AT5G07820 [Plant calmodulin-binding protein-related] -0.241 0.264
170 254870_at AT4G11900 [S-locus lectin protein kinase family protein] -0.238 -0.750
171 248908_at AT5G45800 MEE62, maternal effect embryo arrest 62 -0.238 -0.026
172 255285_at AT4G04630 unknown -0.238 0.183
173 246901_at AT5G25630 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.238 0.458
174 261280_at AT1G05860 unknown -0.232 -0.458
175 259903_at AT1G74160 TRM4, TON1 Recruiting Motif 4 -0.232 0.180
176 246951_at AT5G04880 [expressed protein] -0.227 -0.802
177 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 -0.226 -0.772
178 247169_at AT5G65520 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.225 0.172
179 257852_at AT3G12950 [Trypsin family protein] -0.225 0.680
180 254524_at AT4G20000 [VQ motif-containing protein] -0.225 -0.162
181 265584_at AT2G20180 PIF1, PHY-INTERACTING FACTOR 1, PIL5, phytochrome interacting factor 3-like 5 -0.225 -0.138
182 257181_at AT3G13190 unknown -0.224 0.155
183 255588_at AT4G01570 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.224 0.708
184 256764_at AT3G29310 [calmodulin-binding protein-related] -0.224 0.476
185 265726_at AT2G32010 CVL1, CVP2 like 1 -0.223 0.716
186 250040_at AT5G18390 [Pentatricopeptide repeat (PPR) superfamily protein] -0.222 -0.445
187 247187_at AT5G65490 unknown -0.221 0.926
188 255829_at AT2G40540 ATKT2, ATKUP2, KT2, potassium transporter 2, KUP2, SHY3, TRK2 -0.221 0.291
189 255224_at AT4G05400 [copper ion binding] -0.219 0.847
190 257722_at AT3G18490 ASPG1, ASPARTIC PROTEASE IN GUARD CELL 1 -0.214 0.855
191 250017_at AT5G18140 DJC69, DNA J protein A69 -0.213 0.270
192 260966_at AT1G12220 RPS5, RESISTANT TO P. SYRINGAE 5 -0.210 -0.004
193 246949_at AT5G25140 CYP71B13, cytochrome P450, family 71, subfamily B, polypeptide 13 -0.210 -0.191
194 253686_at AT4G29750 [CRS1 / YhbY (CRM) domain-containing protein] -0.210 -0.382
195 258906_at AT3G06380 ATTLP9, tubby-like protein 9, TLP9, tubby-like protein 9 -0.209 -0.043
196 251415_at AT3G60380 unknown -0.207 -0.176
197 258882_at AT3G06330 [RING/U-box superfamily protein] -0.207 -0.029
198 259994_at AT1G68130 AtIDD14, indeterminate(ID)-domain 14, IDD14, indeterminate(ID)-domain 14, IDD14alpha, IDD14beta -0.207 -0.023
199 253228_at AT4G34630 unknown -0.206 0.174
200 263085_at AT2G16090 ARI2, ARIADNE 2, ATARI2, ARABIDOPSIS ARIADNE 2 -0.205 -0.079
201 257950_at AT3G21780 UGT71B6, UDP-glucosyl transferase 71B6 -0.204 0.012
202 266962_at AT2G39435 TRM18, TON1 Recruiting Motif 18 -0.204 -0.161
203 252424_at AT3G47610 [transcription regulators] -0.202 1.095
204 262705_at AT1G16260 [Wall-associated kinase family protein] -0.202 0.684
205 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] -0.200 -0.001
206 253056_at AT4G37650 SGR7, SHOOT GRAVITROPISM 7, SHR, SHORT ROOT -0.200 -0.112
207 263868_at AT2G36840 ACR10, ACT domain repeats 10 -0.199 -0.633
208 245761_at AT1G66890 unknown -0.199 -0.392
209 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.198 -0.103