4.0:Information of module
FLIGHT BRIC G PDFU-112 seedlings
In comparison with red illumination +lincomycin help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009657 plastid organization BP 5.764e-05
GO:0007389 pattern specification process BP 1.558e-04
GO:0071368 cellular response to cytokinin stimulus BP 2.913e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010167 response to nitrate BP 2.397e-08
GO:0015706 nitrate transport BP 7.556e-08
GO:0015698 inorganic anion transport BP 2.284e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
FLIGHT BRIC G PDFU-112 seedlings		 Log2 signal ratio
red illumination +lincomycin
1 258675_at AT3G08770 LTP6, lipid transfer protein 6 0.536 -0.206
2 251664_at AT3G56940 ACSF, CHL27, CRD1, COPPER RESPONSE DEFECT 1 0.486 -0.160
3 246033_at AT5G08280 HEMC, hydroxymethylbilane synthase, RUG1, RUGOSA 1 0.469 -0.154
4 258897_at AT3G05730 [LOCATED IN: endomembrane system] 0.449 -0.141
5 248427_at AT5G51750 ATSBT1.3, subtilase 1.3, SBT1.3, subtilase 1.3 0.443 -0.024
6 261323_at AT1G44760 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.382 0.054
7 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 0.381 -0.140
8 263846_at AT2G36990 ATSIG6, SIGMA FACTOR 6, SIG6, SIGMA FACTOR 6, SIGF, RNApolymerase sigma-subunit F, SOLDAT8 0.374 0.058
9 257856_at AT3G12930 [Lojap-related protein] 0.369 -0.066
10 257157_at AT3G24350 ATSYP32, SYP32, syntaxin of plants 32 0.361 -0.045
11 246002_at AT5G20740 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.354 0.036
12 255639_at AT4G00760 APRR8, pseudo-response regulator 8, PRR8, PSEUDO-RESPONSE REGULATOR 8 0.354 -0.044
13 262836_at AT1G14680 unknown 0.351 0.056
14 247326_at AT5G64110 [Peroxidase superfamily protein] 0.344 -0.114
15 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 0.338 -0.016
16 262059_at AT1G80030 DJA7, DNA J protein A7 0.335 0.070
17 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 0.335 0.355
18 249933_at AT5G22400 [Rho GTPase activating protein with PAK-box/P21-Rho-binding domain] 0.331 -0.084
19 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 0.329 -0.042
20 265377_at AT2G05790 [O-Glycosyl hydrolases family 17 protein] 0.325 -0.034
21 256027_at AT1G34160 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.324 0.135
22 253083_at AT4G36250 ALDH3F1, aldehyde dehydrogenase 3F1 0.323 -0.020
23 261307_at AT1G48520 GATB, GLU-ADT subunit B 0.323 -0.023
24 259736_at AT1G64390 AtGH9C2, glycosyl hydrolase 9C2, GH9C2, glycosyl hydrolase 9C2 0.319 -0.076
25 252711_at AT3G43720 LTPG2, glycosylphosphatidylinositol-anchored lipid protein transfer 2 0.318 -0.014
26 249694_at AT5G35790 G6PD1, glucose-6-phosphate dehydrogenase 1 0.308 -0.222
27 251735_at AT3G56090 ATFER3, ferritin 3, FER3, ferritin 3 0.307 -0.021
28 258640_at AT3G07930 [DNA glycosylase superfamily protein] 0.305 0.098
29 258128_at AT3G24590 PLSP1, plastidic type i signal peptidase 1 0.304 0.040
30 250243_at AT5G13630 ABAR, ABA-BINDING PROTEIN, CCH, CONDITIONAL CHLORINA, CCH1, CHLH, H SUBUNIT OF MG-CHELATASE, GUN5, GENOMES UNCOUPLED 5 0.302 -0.258
31 255818_at AT2G33570 GALS1, galactan synthase 1 0.299 0.065
32 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.292 0.002
33 250189_at AT5G14410 unknown 0.291 -0.009
34 255440_at AT4G02530 [chloroplast thylakoid lumen protein] 0.288 0.005
35 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 0.283 -0.014
36 262550_at AT1G31310 [hydroxyproline-rich glycoprotein family protein] 0.282 -0.038
37 254755_at AT4G13220 unknown 0.280 -0.017
38 250768_at AT5G05670 [signal recognition particle binding] 0.274 0.034
39 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 0.273 -0.072
40 251006_at AT5G02600 NAKR1, SODIUM POTASSIUM ROOT DEFECTIVE 1, NPCC6, nuclear-enriched phloem companion cell gene 6 0.272 -0.078
41 266186_at AT2G38960 AERO2, endoplasmic reticulum oxidoreductins 2, ERO2, endoplasmic reticulum oxidoreductins 2 0.270 -0.049
42 258139_at AT3G24520 AT-HSFC1, HSFC1, heat shock transcription factor C1 0.266 -0.024
43 245899_at AT5G11030 ALF4, ABERRANT LATERAL ROOT FORMATION 4 0.261 -0.081
44 263470_at AT2G31900 ATMYO5, MYOSIN 5, ATXIF, MYOSIN XI F, XIF, myosin-like protein XIF 0.260 -0.110
45 246964_at AT5G24830 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.259 0.090
46 263979_at AT2G42840 PDF1, protodermal factor 1 0.259 -0.088
47 245112_at AT2G41540 GPDHC1 0.257 -0.029
48 259671_at AT1G52290 AtPERK15, proline-rich extensin-like receptor kinase 15, PERK15, proline-rich extensin-like receptor kinase 15 0.257 0.057
49 259660_at AT1G55260 LTPG6, glycosylphosphatidylinositol-anchored lipid protein transfer 6 0.257 -0.024
50 262029_at AT1G35680 RPL21C, chloroplast ribosomal protein L21 0.256 -0.024
51 253578_at AT4G30340 ATDGK7, diacylglycerol kinase 7, DGK7, diacylglycerol kinase 7 0.254 -0.041
52 258301_at AT3G30510 transposable element gene 0.254 0.046
53 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] 0.254 -0.033
54 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH 0.252 0.054
55 260884_at AT1G29240 unknown 0.252 -0.074
56 254130_at AT4G24540 AGL24, AGAMOUS-like 24 0.251 -0.108
57 265326_at AT2G18220 [Noc2p family] 0.251 0.210
58 246036_at AT5G08370 AGAL2, alpha-galactosidase 2, AtAGAL2, alpha-galactosidase 2 0.251 0.020
59 260938_at AT1G45170 unknown 0.246 0.184
60 252548_at AT3G45850 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.245 -0.042
61 254800_at AT4G13070 [RNA-binding CRS1 / YhbY (CRM) domain protein] 0.245 0.016
62 253233_at AT4G34290 [SWIB/MDM2 domain superfamily protein] 0.244 0.157
63 250559_at AT5G08010 unknown 0.243 -0.032
64 246683_at AT5G33300 [chromosome-associated kinesin-related] 0.242 0.006
65 252119_at AT3G51030 ATTRX H1, ARABIDOPSIS THALIANA THIOREDOXIN H-TYPE 1, ATTRX1, thioredoxin H-type 1, TRX1, thioredoxin H-type 1 0.240 -0.052
66 250221_at AT5G14220 HEMG2, MEE61, MATERNAL EFFECT EMBRYO ARREST 61, PPO2 0.239 -0.038
67 249900_at AT5G22640 emb1211, embryo defective 1211, TIC100, TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 100 0.236 0.015
68 258719_at AT3G09540 [Pectin lyase-like superfamily protein] 0.236 -0.064
69 250865_at AT5G03900 [Iron-sulphur cluster biosynthesis family protein] 0.235 0.075
70 262539_at AT1G17200 [Uncharacterised protein family (UPF0497)] 0.235 0.015
71 261954_at AT1G64510 [Translation elongation factor EF1B/ribosomal protein S6 family protein] 0.231 -0.007
72 259125_at AT3G02300 [Regulator of chromosome condensation (RCC1) family protein] 0.231 -0.046
73 245181_at AT5G12420 [O-acyltransferase (WSD1-like) family protein] 0.231 -0.104
74 256045_at AT1G07150 MAPKKK13, mitogen-activated protein kinase kinase kinase 13 -0.515 0.109
75 253391_at AT4G32590 [2Fe-2S ferredoxin-like superfamily protein] -0.432 0.041
76 246805_at AT5G27050 AGL101, AGAMOUS-like 101 -0.405 -0.023
77 263000_at AT1G54350 ABCD2, ATP-binding cassette D2 -0.389 -0.000
78 252238_at AT3G49960 [Peroxidase superfamily protein] -0.384 -0.075
79 263563_at AT2G15410 [gypsy-like retrotransposon family, has a 4.1e-217 P-value blast match to GB:AAD19359 polyprotein (gypsy_Ty3-element) (Sorghum bicolor)] -0.380 -0.064
80 256987_at AT3G28560 [BCS1 AAA-type ATPase] -0.376 0.018
81 255408_at AT4G03490 [Ankyrin repeat family protein] -0.371 0.038
82 248178_at AT5G54370 [Late embryogenesis abundant (LEA) protein-related] -0.361 -0.157
83 266941_at AT2G18980 [Peroxidase superfamily protein] -0.361 -0.037
84 246024_at AT5G21130 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.360 0.151
85 255191_at AT4G07370 [gypsy-like retrotransposon family (Athila), has a 1.7e-75 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.358 0.011
86 265794_at AT2G01310 unknown -0.351 -0.067
87 255315_at AT4G04165 [pseudogene] -0.350 -0.012
88 258185_at AT3G21580 ABCI12, ATP-binding cassette I12 -0.348 -0.079
89 250583_at AT5G07500 AtTZF6, PEI1, TZF6, Tandem CCCH Zinc Finger protein 6 -0.346 0.048
90 249617_at AT5G37450 [Leucine-rich repeat protein kinase family protein] -0.346 0.031
91 245997_at AT5G20810 SAUR70, SMALL AUXIN UPREGULATED RNA 70 -0.344 0.069
92 247732_at AT5G59600 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.339 0.014
93 264347_at AT1G12040 LRX1, leucine-rich repeat/extensin 1 -0.337 0.010
94 252513_at AT3G46220 unknown -0.337 -0.067
95 257514_at AT1G43940 unknown -0.337 -0.139
96 261638_at AT1G49975 [INVOLVED IN: photosynthesis] -0.336 -0.021
97 254047_at AT4G26040 unknown -0.335 -0.018
98 246123_at AT5G20390 [Glycosyl hydrolase superfamily protein] -0.334 -0.007
99 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.332 -0.027
100 265169_x_at AT1G23720 [Proline-rich extensin-like family protein] -0.330 -0.166
101 260092_at AT1G73280 scpl3, serine carboxypeptidase-like 3 -0.329 0.024
102 248425_at AT5G51690 ACS12, 1-amino-cyclopropane-1-carboxylate synthase 12 -0.329 -0.136
103 248055_at AT5G55830 LecRK-S.7, L-type lectin receptor kinase S.7 -0.328 0.043
104 254982_at AT4G10470 unknown -0.327 -0.039
105 251250_at AT3G62180 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.325 0.008
106 262315_at AT1G70990 [proline-rich family protein] -0.323 0.010
107 262353_at AT1G64210 [Leucine-rich repeat protein kinase family protein] -0.321 -0.075
108 259797_at AT1G64410 unknown -0.321 -0.019
109 247922_at AT5G57500 [Galactosyltransferase family protein] -0.320 -0.035
110 249689_at AT5G36190 unknown -0.318 -0.005
111 250128_at AT5G16540 ZFN3, zinc finger nuclease 3 -0.317 -0.278
112 246354_at AT1G38950 unknown -0.316 0.099
113 257081_at AT3G30460 [RING/U-box superfamily protein] -0.312 -0.247
114 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.305 -0.105
115 246697_at AT5G29210 unknown -0.305 0.065
116 251925_at AT3G54000 unknown -0.304 0.015
117 258358_at AT3G14380 [Uncharacterised protein family (UPF0497)] -0.304 -0.225
118 263190_at AT1G36105 [Mutator-like transposase family, has a 1.7e-33 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.304 0.010
119 247227_at AT5G65130 [Integrase-type DNA-binding superfamily protein] -0.303 -0.139
120 258278_at AT3G26860 [Plant self-incompatibility protein S1 family] -0.301 -0.035
121 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 -0.301 -0.177
122 253146_at AT4G35590 RKD5, RWP-RK domain-containing 5 -0.295 -0.111
123 250802_at AT5G04970 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.294 0.031
124 262555_at AT1G31400 [TRAF-like family protein] -0.293 -0.014
125 253618_at AT4G30420 UMAMIT34, Usually multiple acids move in and out Transporters 34 -0.292 -0.056
126 255219_at AT4G07720 [pseudogene] -0.292 -0.040
127 255264_at AT4G05170 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.290 -0.065
128 266859_at AT2G26880 AGL41, AGAMOUS-like 41 -0.289 0.001
129 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 -0.289 -0.153
130 256632_at AT3G28330 [F-box family protein-related] -0.289 -0.116
131 254598_at AT4G18990 XTH29, xyloglucan endotransglucosylase/hydrolase 29 -0.288 -0.041
132 248080_at AT5G55380 [MBOAT (membrane bound O-acyl transferase) family protein] -0.288 -0.117
133 257825_at AT3G26700 [Protein kinase superfamily protein] -0.287 -0.081
134 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.286 -0.009
135 266263_at AT2G27570 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.284 -0.115
136 262651_at AT1G14100 FUT8, fucosyltransferase 8 -0.283 -0.122
137 259107_at AT3G05460 [sporozoite surface protein-related] -0.283 -0.071
138 246592_at AT5G14890 [NHL domain-containing protein] -0.282 -0.043
139 265784_at AT2G07280 unknown -0.282 -0.057
140 256364_at AT1G66550 ATWRKY67, WRKY67, WRKY DNA-binding protein 67 -0.282 -0.065
141 255023_at AT4G09850 unknown -0.281 0.011
142 266937_at AT2G18930 unknown -0.281 0.004
143 265496_at AT2G15700 [copia-like retrotransposon family, has a 2.4e-308 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)] -0.280 -0.078
144 258427_at AT3G16600 [SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related] -0.279 -0.058
145 263228_at AT1G30700 [FAD-binding Berberine family protein] -0.279 0.035