4.0:Information of module
FLIGHT TAGESB plate6 SHOOTS
In comparison with Shoot dark control 7h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010033 response to organic substance BP 3.450e-06
GO:0009723 response to ethylene BP 2.297e-05
GO:0042221 response to chemical BP 2.439e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043248 proteasome assembly BP 2.882e-08
GO:0051788 response to misfolded protein BP 2.882e-08
GO:0044724 single-organism carbohydrate catabolic p... BP 3.218e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
FLIGHT TAGESB plate6 SHOOTS		 Log2 signal ratio
Shoot dark control 7h
1 263475_at AT2G31945 unknown 0.397 0.776
2 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 0.359 1.054
3 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.353 0.784
4 264314_at AT1G70420 unknown 0.332 0.364
5 257624_at AT3G26220 CYP71B3, cytochrome P450, family 71, subfamily B, polypeptide 3 0.319 1.047
6 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] 0.283 0.148
7 246584_at AT5G14730 unknown 0.281 0.119
8 254954_at AT4G10910 unknown 0.277 0.711
9 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.274 -0.117
10 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 0.264 1.163
11 265387_at AT2G20670 unknown 0.259 0.547
12 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.248 0.745
13 246552_at AT5G15420 unknown 0.248 0.075
14 259566_at AT1G20520 unknown 0.243 0.015
15 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.237 0.614
16 262336_at AT1G64220 TOM7-2, translocase of outer membrane 7 kDa subunit 2 0.235 -0.100
17 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.231 0.292
18 250666_at AT5G07100 WRKY26, WRKY DNA-binding protein 26 0.223 1.217
19 248432_at AT5G51390 unknown 0.217 0.623
20 255733_at AT1G25400 unknown 0.215 0.719
21 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.188 0.269
22 255511_at AT4G02075 PIT1, pitchoun 1 0.188 0.254
23 260040_at AT1G68765 IDA, INFLORESCENCE DEFICIENT IN ABSCISSION 0.185 -0.002
24 252072_at AT3G51710 [D-mannose binding lectin protein with Apple-like carbohydrate-binding domain] 0.183 0.190
25 266196_at AT2G39110 [Protein kinase superfamily protein] 0.180 0.006
26 251209_at AT3G62890 [Pentatricopeptide repeat (PPR) superfamily protein] 0.180 -0.035
27 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.173 0.450
28 259293_at AT3G11580 [AP2/B3-like transcriptional factor family protein] 0.171 -0.098
29 259502_at AT1G15670 KFB01, Kelch repeat F-box 1, KMD2, KISS ME DEADLY 2 0.169 0.790
30 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 0.163 0.012
31 247866_at AT5G57550 XTH25, xyloglucan endotransglucosylase/hydrolase 25, XTR3, xyloglucan endotransglycosylase 3 0.162 0.987
32 264379_at AT2G25200 unknown 0.161 0.495
33 248564_at AT5G49700 AHL17, AT-hook motif nuclear localized protein 17 0.159 0.486
34 261558_at AT1G01770 unknown 0.158 0.447
35 245831_at AT1G48840 unknown 0.157 0.337
36 264577_at AT1G05260 RCI3, RARE COLD INDUCIBLE GENE 3, RCI3A 0.157 -0.117
37 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.151 0.833
38 253997_at AT4G26090 RPS2, RESISTANT TO P. SYRINGAE 2 0.150 0.160
39 264238_at AT1G54740 unknown 0.148 0.877
40 257654_at AT3G13310 DJC66, DNA J protein C66 0.147 0.221
41 262127_at AT1G52550 unknown 0.147 0.034
42 253364_at AT4G33160 [F-box family protein] 0.147 -0.009
43 248347_at AT5G52250 EFO1, EARLY FLOWERING BY OVEREXPRESSION 1, RUP1, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1 0.146 0.516
44 267230_at AT2G44080 ARL, ARGOS-like 0.145 0.585
45 264339_at AT1G70290 ATTPS8, ATTPSC, TPS8, trehalose-6-phosphatase synthase S8 0.145 0.463
46 255836_at AT2G33440 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.143 0.217
47 246034_at AT5G08350 [GRAM domain-containing protein / ABA-responsive protein-related] 0.143 0.581
48 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.142 0.096
49 259015_at AT3G07350 unknown 0.141 0.583
50 266259_at AT2G27830 unknown 0.139 0.821
51 254752_at AT4G13160 unknown 0.137 0.430
52 264223_s_at AT3G16030 CES101, CALLUS EXPRESSION OF RBCS 101, RFO3, RESISTANCE TO FUSARIUM OXYSPORUM 3 0.137 0.226
53 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 0.136 0.176
54 258110_at AT3G14610 CYP72A7, cytochrome P450, family 72, subfamily A, polypeptide 7 0.135 0.318
55 264550_at AT1G09450 AtHaspin, Haspin, Haspin-related gene 0.135 -0.071
56 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 0.132 0.290
57 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.293 0.172
58 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.243 -0.658
59 247406_at AT5G62920 ARR6, response regulator 6 -0.241 -0.324
60 252972_at AT4G38840 SAUR14, SMALL AUXIN UPREGULATED RNA 14 -0.237 -0.338
61 245669_at AT1G28300 LEC2, LEAFY COTYLEDON 2 -0.216 -0.061
62 262764_at AT1G13140 CYP86C3, cytochrome P450, family 86, subfamily C, polypeptide 3 -0.211 0.047
63 266378_at AT2G14700 unknown -0.195 0.005
64 257562_at AT3G30480 unknown -0.192 0.002
65 254490_at AT4G20320 [CTP synthase family protein] -0.188 0.096
66 251452_at AT3G60060 [NAD(P)-binding Rossmann-fold superfamily protein] -0.179 -0.040
67 251748_at AT3G55680 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.179 -0.031
68 260241_at AT1G63710 CYP86A7, cytochrome P450, family 86, subfamily A, polypeptide 7 -0.179 -0.327
69 250025_at AT5G18290 SIP1;2, SIP1B, SMALL AND BASIC INTRINSIC PROTEIN 1B -0.176 0.211
70 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.173 -0.354
71 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -0.171 -0.222
72 245700_at AT5G04180 ACA3, alpha carbonic anhydrase 3, ATACA3, ALPHA CARBONIC ANHYDRASE 3 -0.170 0.113
73 257028_at AT3G19230 [Leucine-rich repeat (LRR) family protein] -0.164 -0.067
74 265945_at AT2G19500 ATCKX2, CKX2, cytokinin oxidase 2 -0.164 0.013
75 250393_at AT5G10900 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.162 0.180
76 261807_at AT1G30515 unknown -0.162 -0.223
77 258358_at AT3G14380 [Uncharacterised protein family (UPF0497)] -0.160 -0.134
78 259714_at AT1G60980 ATGA20OX4, gibberellin 20-oxidase 4, GA20OX4, gibberellin 20-oxidase 4 -0.160 -0.051
79 246896_at AT5G25550 [Leucine-rich repeat (LRR) family protein] -0.159 0.040
80 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 -0.157 0.055
81 257517_at AT3G16330 unknown -0.156 -0.345
82 263324_at AT2G04220 unknown -0.156 0.043
83 246754_at AT5G27910 NF-YC8, nuclear factor Y, subunit C8 -0.155 0.065
84 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.155 -0.207
85 255051_at AT4G09710 [non-LTR retrotransposon family (LINE), has a 4.7e-40 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] -0.154 -0.021
86 266524_at AT2G16960 [ARM repeat superfamily protein] -0.152 0.036
87 252307_at AT3G49280 unknown -0.152 0.046
88 266084_at AT2G37810 [Cysteine/Histidine-rich C1 domain family protein] -0.152 0.037
89 260860_at AT1G43810 unknown -0.152 -0.031
90 266965_at AT2G39510 UMAMIT14, Usually multiple acids move in and out Transporters 14 -0.152 -0.106
91 257605_at AT3G13840 [GRAS family transcription factor] -0.152 -0.018
92 245108_at AT2G41510 ATCKX1, CYTOKININ OXIDASE/DEHYDROGENASE 1, CKX1, cytokinin oxidase/dehydrogenase 1 -0.151 0.034
93 250616_at AT5G07280 EMS1, EXCESS MICROSPOROCYTES1, EXS, EXTRA SPOROGENOUS CELLS -0.151 -0.030
94 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.149 0.016
95 257059_at AT3G15280 unknown -0.148 -0.012
96 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.147 -0.012
97 254469_at AT4G20470 unknown -0.146 0.022
98 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.145 -0.827
99 263252_at AT2G31380 BBX25, B-box domain protein 25, STH, salt tolerance homologue -0.144 -0.585
100 254631_at AT4G18610 LSH9, LIGHT SENSITIVE HYPOCOTYLS 9 -0.143 0.181
101 250574_at AT5G08230 [Tudor/PWWP/MBT domain-containing protein] -0.141 0.205
102 248054_at AT5G55820 WYR, WYRD -0.141 -0.150
103 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.141 -0.270
104 254972_at AT4G10440 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.140 0.030
105 263036_at AT1G23890 [NHL domain-containing protein] -0.140 0.005
106 257542_at AT3G26050 [TPX2 (targeting protein for Xklp2) protein family] -0.140 -0.140
107 249278_at AT5G41900 [alpha/beta-Hydrolases superfamily protein] -0.140 -0.544
108 248939_at AT5G45790 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.140 0.149
109 261266_at AT1G26770 AT-EXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXP10, ARABIDOPSIS THALIANA EXPANSIN 10, ATEXPA10, expansin A10, ATHEXP ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, EXP10, EXPANSIN 10, EXPA10, expansin A10 -0.136 -0.410
110 263913_at AT2G36570 PXC1, PXY/TDR-correlated 1 -0.136 -0.276
111 260043_at AT1G41770 unknown -0.136 0.022