4.0:Information of module
BAM8-Lig Ox untreated
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006275 regulation of DNA replication BP 1.731e-03
GO:0006261 DNA-dependent DNA replication BP 4.736e-03
GO:0006270 DNA replication initiation BP 5.197e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006073 cellular glucan metabolic process BP 1.255e-02
GO:0044042 glucan metabolic process BP 1.255e-02
GO:0019439 aromatic compound catabolic process BP 1.750e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
BAM8-Lig Ox untreated		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 248997_at AT5G45300 BAM8, BETA-AMYLASE 8, BMY2, beta-amylase 2 0.400 0.004
2 258374_at AT3G14360 [alpha/beta-Hydrolases superfamily protein] 0.192 0.056
3 251637_at AT3G57570 [ARM repeat superfamily protein] 0.164 -0.053
4 261863_at AT1G50630 unknown 0.142 0.021
5 256998_at AT3G14180 ASIL2, Arabidopsis 6B-interacting protein 1-like 2 0.142 0.000
6 249069_at AT5G44010 unknown 0.141 0.097
7 267065_at AT2G41080 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.129 0.028
8 262150_at AT1G52520 FRS6, FAR1-related sequence 6 0.123 -0.107
9 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 0.115 -0.004
10 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 0.114 0.010
11 252352_at AT3G48185 unknown 0.113 0.014
12 255485_at AT4G02550 unknown 0.105 0.046
13 263681_at AT1G26840 ATORC6, ARABIDOPSIS THALIANA ORIGIN RECOGNITION COMPLEX PROTEIN 6, ORC6, origin recognition complex protein 6 0.100 0.016
14 254054_at AT4G25320 AHL3, AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3 0.099 0.017
15 256409_at AT1G66620 [Protein with RING/U-box and TRAF-like domains] 0.097 0.016
16 257725_at AT3G18524 ATMSH2, MSH2, MUTS homolog 2 0.095 0.013
17 266294_at AT2G29500 [HSP20-like chaperones superfamily protein] 0.093 -0.001
18 256016_at AT1G19240 unknown 0.092 0.042
19 261916_at AT1G65910 anac028, NAC domain containing protein 28, NAC028, NAC domain containing protein 28 0.087 -0.000
20 258652_at AT3G09910 ATRAB18C, ATRABC2B, RAB GTPase homolog C2B, RABC2b, RAB GTPase homolog C2B 0.087 -0.003
21 256384_at AT1G66660 [Protein with RING/U-box and TRAF-like domains] 0.084 -0.005
22 255175_at AT4G07960 ATCSLC12, Cellulose-synthase-like C12, CSLC12, CELLULOSE-SYNTHASE LIKE C12, CSLC12, Cellulose-synthase-like C12 0.084 0.012
23 262410_at AT1G34770 unknown 0.083 0.068
24 262500_at AT1G21760 ATFBP7, F-BOX PROTEIN 7, FBP7, F-box protein 7 0.081 0.005
25 249780_at AT5G24240 [Phosphatidylinositol 3- and 4-kinase ] -0.704 0.007
26 267259_at AT2G23090 [Uncharacterised protein family SERF] -0.269 0.037
27 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.199 -0.013
28 257584_at AT1G54955 unknown -0.185 -0.016
29 265093_at AT1G03905 ABCI19, ATP-binding cassette I19 -0.172 -0.113
30 256180_at AT1G51810 [Leucine-rich repeat protein kinase family protein] -0.161 0.028
31 255770_at AT1G18560 [BED zinc finger ] -0.157 -0.031
32 267098_at AT2G41451 unknown -0.148 -0.054
33 265620_at AT2G27310 [F-box family protein] -0.145 0.012
34 264495_at AT1G27380 RIC2, ROP-interactive CRIB motif-containing protein 2 -0.144 0.042
35 250631_at AT5G07430 [Pectin lyase-like superfamily protein] -0.141 -0.021
36 249987_at AT5G18490 unknown -0.139 -0.023
37 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 -0.138 0.064
38 262465_at AT1G50270 [Pentatricopeptide repeat (PPR) superfamily protein] -0.136 0.001
39 256847_at AT3G27950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.132 -0.020
40 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.131 0.009
41 252675_at AT3G44270 [copia-like retrotransposon family, has a 1.1e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.131 -0.009
42 250697_at AT5G06800 [myb-like HTH transcriptional regulator family protein] -0.126 -0.010
43 255705_at AT4G00160 [F-box/RNI-like/FBD-like domains-containing protein] -0.126 -0.026
44 250746_at AT5G05880 [UDP-Glycosyltransferase superfamily protein] -0.126 -0.010
45 258841_at AT3G04660 [F-box and associated interaction domains-containing protein] -0.125 0.042
46 266765_at AT2G46860 AtPPa3, pyrophosphorylase 3, PPa3, pyrophosphorylase 3 -0.121 -0.013
47 261459_at AT1G21100 IGMT1, indole glucosinolate O-methyltransferase 1 -0.120 -0.025