4.0:Analysis result:Information of module
| BAM8-Lig Ox untreated |
Top 100 most enriched GO terms
| GOID/Term | Ontology | p-value | Genes |
|---|---|---|---|
| GO:0006275 regulation of DNA replication | BP | 1.731e-03 | ORTH2 AtTOP3alpha ATCAP-C CCS52B MAP65-2 ATMSH2 ATPOT1 ATCDT1A |
| GO:0006261 DNA-dependent DNA replication | BP | 4.736e-03 | ORTH2 AtTOP3alpha ATCAP-C CCS52B ATMSH2 AT1G34770 ATORC6 ATCDT1A |
| GO:0006270 DNA replication initiation | BP | 5.197e-03 | ORTH2 AtTOP3alpha ATCAP-C ATMSH2 ATCDT1A |
| GO:0006342 chromatin silencing | BP | 6.835e-03 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0010564 regulation of cell cycle process | BP | 6.965e-03 | ATCAP-C CCS52B MAP65-2 EDA8 ATMSH2 RST1 ATCDT1A |
| GO:0045814 negative regulation of gene expression, ... | BP | 7.137e-03 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0051052 regulation of DNA metabolic process | BP | 1.071e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B MAP65-2 ATMSH2 ATPOT1 ATCDT1A |
| GO:0043414 macromolecule methylation | BP | 1.472e-02 | ORTH2 AT5G15070 AT5G15550 AtTOP3alpha AT5G64150 ATCAP-C CCS52B AT5G06550 ANT MAP65-2 YAO ATMSH2 AT1G30550 ATCDT1A |
| GO:0006479 protein methylation | BP | 1.516e-02 | ORTH2 AT5G15070 AtTOP3alpha AT5G64150 ATCAP-C CCS52B AT5G06550 MAP65-2 ATMSH2 ATCDT1A |
| GO:0008213 protein alkylation | BP | 1.516e-02 | ORTH2 AT5G15070 AtTOP3alpha AT5G64150 ATCAP-C CCS52B AT5G06550 MAP65-2 ATMSH2 ATCDT1A |
| GO:0042542 response to hydrogen peroxide | BP | 1.577e-02 | AT5G18420 LPPepsilon1 ATMEK1 GEK1 AT2G29500 |
| GO:0032259 methylation | BP | 1.708e-02 | ORTH2 AT5G15070 AT5G15550 AtTOP3alpha AT5G64150 ATCAP-C CCS52B AT5G06550 ANT MAP65-2 YAO ATMSH2 AT1G30550 ATCDT1A |
| GO:0006508 proteolysis | BP | 1.740e-02 | AT5G26830 AT5G59130 UBP21 AT5G42620 AT5G22860 CCS52B VFB2 CEP3 SGT1A AT1G66660 AT1G66620 DDI1 AT3G15710 AT1G50380 ATSKP2;2 |
| GO:0009266 response to temperature stimulus | BP | 1.880e-02 | AT1G51090 AT3G57570 LPPepsilon1 ATMEK1 ATCTC1 ATMSRB3 AT4G02550 EDA8 RST1 AT1G50380 ATFBP7 ATSKP2;2 AT2G29500 BAM7 |
| GO:0010286 heat acclimation | BP | 1.916e-02 | AT4G02550 ATSKP2;2 AT2G29500 |
| GO:0048831 regulation of shoot system development | BP | 2.013e-02 | ATCAP-C BAM8 AT5G06550 MAP65-2 EDA8 ATFYPP3 ATMSH2 RST1 ATCDT1A BAM7 |
| GO:0006260 DNA replication | BP | 2.074e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B MAP65-2 ATMSH2 AT1G34770 ATPOT1 ATORC6 ATCDT1A |
| GO:0051726 regulation of cell cycle | BP | 2.117e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B MAP65-2 EDA8 ATMSH2 RST1 ATCDT1A |
| GO:0010048 vernalization response | BP | 2.265e-02 | AT3G57570 ATCTC1 AT1G50380 BAM7 |
| GO:0016458 gene silencing | BP | 2.474e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT MAP65-2 ATMSH2 AT1G76630 ATCDT1A |
| GO:0006346 methylation-dependent chromatin silencin... | BP | 2.636e-02 | ORTH2 ATCAP-C ANT ATMSH2 AT1G76630 |
| GO:0071103 DNA conformation change | BP | 2.774e-02 | ORTH2 AtTOP3alpha ATMSH2 HIS4 |
| GO:0008283 cell proliferation | BP | 2.964e-02 | ORTH2 ATCAP-C CCS52B HAC11 ATPSK3 ANT MAP65-2 ATMSH2 |
| GO:0016571 histone methylation | BP | 3.253e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B AT5G06550 MAP65-2 ATMSH2 ATCDT1A |
| GO:0045892 negative regulation of transcription, DN... | BP | 3.253e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0051253 negative regulation of RNA metabolic pro... | BP | 3.253e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:1902679 negative regulation of RNA biosynthetic ... | BP | 3.253e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:1903507 negative regulation of nucleic acid-temp... | BP | 3.253e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0051567 histone H3-K9 methylation | BP | 3.284e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B ATMSH2 ATCDT1A |
| GO:0061647 histone H3-K9 modification | BP | 3.284e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B ATMSH2 ATCDT1A |
| GO:0044271 cellular nitrogen compound biosynthetic ... | BP | 3.438e-02 | ORTH2 AT5G67000 AtTOP3alpha AT5G64150 SRT1 ATCAP-C AT5G47435 UBP21 NRPC2 TSBtype2 CCS52B HAC11 NF-YB12 AT5G06550 HAT14 AT3G57010 ANT AT4G27240 ATMEK1 YAO ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 AT1G42440 CuAO1 AT1G28530 AT1G75670 ATCDT1A TH-1 |
| GO:0000272 polysaccharide catabolic process | BP | 3.499e-02 | BAM8 BAM7 |
| GO:0007005 mitochondrion organization | BP | 3.546e-02 | AT5G15550 AT5G06550 YAO RPS2 AT1G75670 |
| GO:0009644 response to high light intensity | BP | 3.551e-02 | AT5G18420 LPPepsilon1 GEK1 AT2G29500 |
| GO:0031497 chromatin assembly | BP | 3.677e-02 | ORTH2 ATMSH2 HIS4 |
| GO:0016569 covalent chromatin modification | BP | 3.893e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B AT5G06550 ANT MAP65-2 ATMSH2 AT1G76630 ATCDT1A |
| GO:0045934 negative regulation of nucleobase-contai... | BP | 3.956e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0051172 negative regulation of nitrogen compound... | BP | 3.956e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0006323 DNA packaging | BP | 3.978e-02 | ORTH2 ATMSH2 HIS4 |
| GO:0007067 mitotic nuclear division | BP | 3.978e-02 | AtTOP3alpha ATCAP-C MAP65-2 |
| GO:0008037 cell recognition | BP | 4.021e-02 | YAO AT1G61370 |
| GO:0048544 recognition of pollen | BP | 4.021e-02 | YAO AT1G61370 |
| GO:0018022 peptidyl-lysine methylation | BP | 4.164e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B MAP65-2 ATMSH2 ATCDT1A |
| GO:0034968 histone lysine methylation | BP | 4.164e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B MAP65-2 ATMSH2 ATCDT1A |
| GO:0009409 response to cold | BP | 4.208e-02 | AT1G51090 AT3G57570 ATMEK1 ATCTC1 ATMSRB3 EDA8 RST1 AT1G50380 ATFBP7 BAM7 |
| GO:0010558 negative regulation of macromolecule bio... | BP | 4.401e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:2000113 negative regulation of cellular macromol... | BP | 4.401e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0009890 negative regulation of biosynthetic proc... | BP | 4.636e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0031327 negative regulation of cellular biosynth... | BP | 4.636e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT ATMSH2 AT1G76630 ATCDT1A |
| GO:0009057 macromolecule catabolic process | BP | 4.776e-02 | AT5G26830 UBP21 BAM8 CCS52B AT3G57570 VFB2 SGT1A AT1G66660 AT1G66620 ATSKP2;2 BAM7 |
| GO:0010089 xylem development | BP | 4.954e-02 | ANT AT4G25320 AT1G63520 |
| GO:0006338 chromatin remodeling | BP | 5.146e-02 | ORTH2 ATMSH2 |
| GO:0009875 pollen-pistil interaction | BP | 5.146e-02 | YAO AT1G61370 |
| GO:0010556 regulation of macromolecule biosynthetic... | BP | 5.171e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 MAP65-2 ATMEK1 ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 ATFBP7 ATPOT1 ATCDT1A |
| GO:2000112 regulation of cellular macromolecule bio... | BP | 5.171e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 MAP65-2 ATMEK1 ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 ATFBP7 ATPOT1 ATCDT1A |
| GO:0051276 chromosome organization | BP | 5.501e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B AT5G06550 ANT MAP65-2 ATCTC1 ATMSH2 RST1 AT1G76630 ATPOT1 ATCDT1A HIS4 |
| GO:0016567 protein ubiquitination | BP | 5.510e-02 | ORTH2 AT3G49810 EDA8 AT1G66660 AT1G66620 RST1 |
| GO:0016568 chromatin modification | BP | 5.550e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B AT5G06550 ANT MAP65-2 ATMSH2 AT1G76630 ATCDT1A |
| GO:0031326 regulation of cellular biosynthetic proc... | BP | 5.961e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 MAP65-2 ATMEK1 ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 ATFBP7 ATPOT1 ATCDT1A |
| GO:0006305 DNA alkylation | BP | 6.081e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B ANT ATMSH2 |
| GO:0006306 DNA methylation | BP | 6.081e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B ANT ATMSH2 |
| GO:0044728 DNA methylation or demethylation | BP | 6.081e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B ANT ATMSH2 |
| GO:0009408 response to heat | BP | 6.118e-02 | LPPepsilon1 AT4G02550 ATFBP7 ATSKP2;2 AT2G29500 |
| GO:0006304 DNA modification | BP | 6.279e-02 | ORTH2 AtTOP3alpha ATCAP-C CCS52B ANT ATMSH2 |
| GO:0010608 posttranscriptional regulation of gene e... | BP | 6.480e-02 | ATCAP-C ANT ATMEK1 ATMSH2 AT1G76630 ATFBP7 |
| GO:0007131 reciprocal meiotic recombination | BP | 6.563e-02 | AtTOP3alpha ATCAP-C MAP65-2 ATMSH2 |
| GO:0035825 reciprocal DNA recombination | BP | 6.563e-02 | AtTOP3alpha ATCAP-C MAP65-2 ATMSH2 |
| GO:0006486 protein glycosylation | BP | 6.830e-02 | AT3G26560 DDI1 RST1 AT3G06340 ALG3 |
| GO:0009101 glycoprotein biosynthetic process | BP | 6.830e-02 | AT3G26560 DDI1 RST1 AT3G06340 ALG3 |
| GO:0043413 macromolecule glycosylation | BP | 6.830e-02 | AT3G26560 DDI1 RST1 AT3G06340 ALG3 |
| GO:0007127 meiosis I | BP | 6.860e-02 | AtTOP3alpha ATCAP-C MAP65-2 ATMSH2 |
| GO:0007000 nucleolus organization | BP | 7.013e-02 | ORTH2 MAP65-2 |
| GO:0007059 chromosome segregation | BP | 7.077e-02 | AT5G10710 AtTOP3alpha ATCAP-C MAP65-2 RST1 |
| GO:0032446 protein modification by small protein co... | BP | 7.108e-02 | ORTH2 AT3G49810 EDA8 AT1G66660 AT1G66620 RST1 |
| GO:0006325 chromatin organization | BP | 7.132e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B AT5G06550 ANT MAP65-2 ATMSH2 AT1G76630 ATCDT1A HIS4 |
| GO:0006626 protein targeting to mitochondrion | BP | 7.163e-02 | AT5G15550 AT5G06550 RPS2 AT1G75670 |
| GO:0070585 protein localization to mitochondrion | BP | 7.163e-02 | AT5G15550 AT5G06550 RPS2 AT1G75670 |
| GO:0072655 establishment of protein localization to... | BP | 7.163e-02 | AT5G15550 AT5G06550 RPS2 AT1G75670 |
| GO:0009100 glycoprotein metabolic process | BP | 7.329e-02 | AT3G26560 DDI1 RST1 AT3G06340 ALG3 |
| GO:0009642 response to light intensity | BP | 7.473e-02 | AT5G18420 LPPepsilon1 GEK1 AT2G29500 |
| GO:0044249 cellular biosynthetic process | BP | 7.578e-02 | ATSYTC ORTH2 AT5G10710 MUB2 AT5G26830 AT5G67000 AtTOP3alpha AT5G64150 SRT1 AT5G54750 ATCAP-C AT5G47435 UBP21 NRPC2 AT5G44010 TSBtype2 CCS52B HAC11 NF-YB12 AT5G06550 HAT14 AT3G57010 CAN LPPepsilon1 VFB2 AT3G48185 ANT GGP3 AT4G27240 MAP65-2 ATMEK1 AT4G24750 YAO ATMSRB3 ARF13 LAG13 ASIL2 AT3G26560 DDI1 ATMSH2 LPD1 AtMYB4R1 RST1 ATRAB18C AT3G06340 RPS2 AT1G76580 AT1G76630 AT1G62310 AT1G26640 AtTLP8 anac028 AT1G42440 AT1G34770 ATFBP7 CuAO1 AT1G28530 AT1G75670 ATPOT1 ATORC6 ATCDT1A TH-1 AT2G24170 ALG3 |
| GO:0070085 glycosylation | BP | 7.586e-02 | AT3G26560 DDI1 RST1 AT3G06340 ALG3 |
| GO:0051301 cell division | BP | 7.611e-02 | ORTH2 AT5G10710 ATCAP-C CCS52B MAP65-2 EDA8 AT3G26560 ATMSH2 RST1 |
| GO:0034654 nucleobase-containing compound biosynthe... | BP | 7.713e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C AT5G47435 UBP21 NRPC2 CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 ATMEK1 YAO ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 AT1G42440 AT1G28530 AT1G75670 ATCDT1A |
| GO:0006310 DNA recombination | BP | 7.770e-02 | ORTH2 AtTOP3alpha ATCAP-C MAP65-2 ATMSH2 AT1G34770 |
| GO:0009909 regulation of flower development | BP | 7.801e-02 | ATCAP-C AT5G06550 MAP65-2 EDA8 ATFYPP3 ATMSH2 RST1 ATCDT1A |
| GO:0006511 ubiquitin-dependent protein catabolic pr... | BP | 7.879e-02 | UBP21 CCS52B VFB2 SGT1A AT1G66660 AT1G66620 ATSKP2;2 |
| GO:0051302 regulation of cell division | BP | 8.055e-02 | CCS52B MAP65-2 ATMSH2 |
| GO:0051603 proteolysis involved in cellular protein... | BP | 8.170e-02 | AT5G26830 UBP21 CCS52B VFB2 SGT1A AT1G66660 AT1G66620 ATSKP2;2 |
| GO:0019941 modification-dependent protein catabolic... | BP | 8.290e-02 | UBP21 CCS52B VFB2 SGT1A AT1G66660 AT1G66620 ATSKP2;2 |
| GO:0043632 modification-dependent macromolecule cat... | BP | 8.290e-02 | UBP21 CCS52B VFB2 SGT1A AT1G66660 AT1G66620 ATSKP2;2 |
| GO:0006417 regulation of translation | BP | 8.361e-02 | ATMEK1 ATFBP7 |
| GO:0010629 negative regulation of gene expression | BP | 8.450e-02 | ORTH2 AtTOP3alpha SRT1 ATCAP-C CCS52B ANT MAP65-2 ATMSH2 AT1G76630 ATCDT1A |
| GO:0018130 heterocycle biosynthetic process | BP | 8.512e-02 | ORTH2 AT5G67000 AtTOP3alpha AT5G64150 SRT1 ATCAP-C AT5G47435 UBP21 NRPC2 TSBtype2 CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 ATMEK1 YAO ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 AT1G42440 AT1G28530 AT1G75670 ATCDT1A TH-1 |
| GO:0019219 regulation of nucleobase-containing comp... | BP | 8.541e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 MAP65-2 ATMEK1 ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 ATPOT1 ATCDT1A |
| GO:0016570 histone modification | BP | 8.638e-02 | ORTH2 AT5G15070 AtTOP3alpha ATCAP-C CCS52B AT5G06550 MAP65-2 ATMSH2 ATCDT1A |
| GO:0006351 transcription, DNA-templated | BP | 8.817e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C NRPC2 CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 ATMEK1 ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 AT1G75670 ATCDT1A |
| GO:0097659 nucleic acid-templated transcription | BP | 8.817e-02 | ORTH2 AT5G67000 AtTOP3alpha SRT1 ATCAP-C NRPC2 CCS52B HAC11 NF-YB12 AT5G06550 HAT14 ANT AT4G27240 ATMEK1 ARF13 ASIL2 ATMSH2 AtMYB4R1 ATRAB18C AT1G76580 AT1G76630 AT1G62310 AtTLP8 anac028 AT1G75670 ATCDT1A |
| GO:0000003 reproduction | BP | 8.823e-02 | AtTOP3alpha ATCAP-C NRPC2 CCS52B ANT MAP65-2 EDA8 ASIL2 ATMSH2 RST1 AT1G34770 |
| GO:0030244 cellulose biosynthetic process | BP | 8.936e-02 | MUB2 AT5G54750 ALG3 |