4.0:Information of module
ga1-3 scl3-1
In comparison with root cap pGL2 8h BL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 9.280e-08
GO:0050896 response to stimulus BP 9.305e-08
GO:0042221 response to chemical BP 1.932e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010468 regulation of gene expression BP 2.217e-05
GO:0006355 regulation of transcription, DNA-templat... BP 2.772e-05
GO:1903506 regulation of nucleic acid-templated tra... BP 2.772e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ga1-3 scl3-1		 Log2 signal ratio
root cap pGL2 8h BL
1 259352_at AT3G05170 [Phosphoglycerate mutase family protein] 0.290 0.690
2 265400_at AT2G10940 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.276 -0.597
3 264777_at AT1G08630 THA1, threonine aldolase 1 0.262 1.180
4 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 0.238 -1.919
5 248153_at AT5G54250 ATCNGC4, cyclic nucleotide-gated cation channel 4, CNGC4, cyclic nucleotide-gated cation channel 4, DND2, DEFENSE, NO DEATH 2, HLM1 0.232 0.611
6 254247_at AT4G23260 CRK18, cysteine-rich RLK (RECEPTOR-like protein kinase) 18 0.211 0.999
7 256073_at AT1G18100 E12A11, MFT, MOTHER OF FT AND TFL1 0.202 1.630
8 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 0.187 -0.248
9 264636_at AT1G65490 unknown 0.186 0.079
10 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 0.183 -0.442
11 250558_at AT5G07990 CYP75B1, CYTOCHROME P450 75B1, D501, TT7, TRANSPARENT TESTA 7 0.182 -0.414
12 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.179 -0.406
13 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.179 1.358
14 264211_at AT1G22770 FB, GI, GIGANTEA 0.172 -0.858
15 250620_at AT5G07190 ATS3, seed gene 3 0.172 -1.612
16 261907_at AT1G65060 4CL3, 4-coumarate:CoA ligase 3 0.163 -1.130
17 246149_at AT5G19890 [Peroxidase superfamily protein] 0.158 1.505
18 247323_at AT5G64170 LNK1, night light-inducible and clock-regulated 1 0.155 0.101
19 264469_at AT1G67100 LBD40, LOB domain-containing protein 40 0.150 1.594
20 260556_at AT2G43620 [Chitinase family protein] 0.141 -0.540
21 263787_at AT2G46420 unknown 0.139 0.306
22 255720_at AT1G32060 PRK, phosphoribulokinase 0.133 -0.491
23 248674_at AT5G48800 [Phototropic-responsive NPH3 family protein] 0.127 -0.996
24 264635_at AT1G65500 unknown 0.127 -0.688
25 248593_at AT5G49180 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.125 0.079
26 267167_at AT2G37740 ATZFP10, ZINC-FINGER PROTEIN 10, ZFP10, zinc-finger protein 10 0.125 0.079
27 260030_at AT1G68880 AtbZIP, basic leucine-zipper 8, bZIP, basic leucine-zipper 8 0.124 0.592
28 261522_at AT1G71710 [DNAse I-like superfamily protein] 0.123 1.105
29 261866_at AT1G50420 SCL-3, SCARECROW-LIKE 3, SCL3, scarecrow-like 3 -1.152 0.078
30 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.222 2.481
31 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -0.208 2.358
32 260668_at AT1G19530 unknown -0.192 2.191
33 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.184 -0.163
34 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.162 0.677
35 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.148 -0.341
36 249127_at AT5G43500 ARP9, actin-related protein 9, ATARP9, actin-related protein 9 -0.147 -0.132
37 261395_at AT1G79700 WRI4, WRINKLED 4 -0.136 1.163
38 248050_at AT5G56100 [glycine-rich protein / oleosin] -0.122 2.012
39 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 -0.119 1.053
40 247326_at AT5G64110 [Peroxidase superfamily protein] -0.111 -0.354
41 250107_at AT5G15330 ATSPX4, ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX4, SPX domain gene 4 -0.110 0.101
42 249408_at AT5G40330 ATMYB23, MYB DOMAIN PROTEIN 23, ATMYBRTF, MYB23, myb domain protein 23 -0.110 0.839
43 252153_at AT3G51360 [Eukaryotic aspartyl protease family protein] -0.110 -0.159
44 255149_at AT4G08150 BP, BREVIPEDICELLUS, BP1, BREVIPEDICELLUS 1, KNAT1, KNOTTED-like from Arabidopsis thaliana -0.108 -0.195
45 256520_at AT1G66030 pseudogene -0.107 0.092
46 257274_at AT3G14510 [Polyprenyl synthetase family protein] -0.104 0.064
47 267638_at AT2G42210 ATOEP16-3, OEP16-3 -0.104 0.139
48 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.103 -1.357
49 255062_at AT4G08940 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.102 -0.181
50 266695_at AT2G19810 AtOZF1, AtTZF2, OZF1, Oxidation-related Zinc Finger 1, TZF2, tandem zinc finger 2 -0.097 1.104
51 249824_at AT5G23380 unknown -0.096 0.529
52 252570_at AT3G45300 ATIVD, IVD, isovaleryl-CoA-dehydrogenase, IVDH, ISOVALERYL-COA-DEHYDROGENASE -0.093 0.497
53 251660_at AT3G57160 unknown -0.092 0.367
54 247023_at AT5G67060 HEC1, HECATE 1 -0.086 0.079
55 258402_at AT3G15450 [Aluminium induced protein with YGL and LRDR motifs] -0.086 2.659