4.0:Information of module
seedling 3h after Gamma WT
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006260 DNA replication BP 7.333e-08
GO:0006950 response to stress BP 9.038e-08
GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 1.980e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1903047 mitotic cell cycle process BP 7.863e-22
GO:0000278 mitotic cell cycle BP 5.401e-21
GO:0032506 cytokinetic process BP 9.568e-21
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
seedling 3h after Gamma WT		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 1.322 0.080
2 248086_at AT5G55490 ATGEX1, GAMETE EXPRESSED PROTEIN 1, GEX1, gamete expressed protein 1 1.308 -0.859
3 254055_at AT4G25330 unknown 1.240 -0.203
4 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 1.211 0.447
5 250914_at AT5G03780 TRFL10, TRF-like 10 1.158 -0.453
6 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 1.089 -0.629
7 249809_at AT5G23910 [ATP binding microtubule motor family protein] 1.075 0.406
8 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 1.057 0.387
9 252539_at AT3G45730 unknown 1.039 -1.435
10 256442_at AT3G10930 unknown 1.036 -0.497
11 259409_at AT1G13330 AHP2, Arabidopsis Hop2 homolog 1.031 -0.036
12 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 1.002 -0.332
13 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.980 0.646
14 253733_at AT4G29170 ATMND1 0.972 0.051
15 249326_at AT5G40840 AtRAD21.1, Sister chromatid cohesion 1 (SCC1) protein homolog 2, SYN2 0.936 0.374
16 246132_at AT5G20850 ATRAD51, RAD51 0.929 0.234
17 259607_at AT1G27940 ABCB13, ATP-binding cassette B13, PGP13, P-glycoprotein 13 0.894 -1.276
18 254287_at AT4G22960 unknown 0.891 -0.083
19 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.877 -0.823
20 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 0.870 -0.395
21 266511_at AT2G47680 [zinc finger (CCCH type) helicase family protein] 0.858 0.944
22 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.846 -0.082
23 258476_at AT3G02400 [SMAD/FHA domain-containing protein ] 0.844 -0.468
24 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.837 0.780
25 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.831 0.378
26 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.807 0.087
27 252770_at AT3G42860 [zinc knuckle (CCHC-type) family protein] 0.807 0.611
28 261086_at AT1G17460 TRFL3, TRF-like 3 0.799 -0.282
29 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.784 0.817
30 250372_at AT5G11460 unknown 0.784 -0.402
31 253757_at AT4G28950 ARAC7, Arabidopsis RAC-like 7, ATRAC7, ATROP9, RAC7, ROP9, RHO-related protein from plants 9 0.770 0.069
32 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.767 0.244
33 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 0.759 -0.046
34 254565_at AT4G19130 [Replication factor-A protein 1-related] 0.749 0.472
35 263515_at AT2G21640 unknown 0.747 0.586
36 252330_at AT3G48770 [DNA binding] 0.745 -0.748
37 246994_at AT5G67460 [O-Glycosyl hydrolases family 17 protein] 0.733 0.050
38 245137_at AT2G45460 [SMAD/FHA domain-containing protein ] 0.710 0.587
39 248641_at AT5G49110 unknown 0.710 -1.181
40 265449_at AT2G46610 At-RS31a, arginine/serine-rich splicing factor 31a, RS31a, arginine/serine-rich splicing factor 31a 0.709 0.711
41 253044_at AT4G37290 unknown 0.686 -0.520
42 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.684 -0.126
43 246600_at AT5G14930 SAG101, senescence-associated gene 101 0.664 0.214
44 253157_at AT4G35740 ATRECQ3, A. THALIANA RECQ HELICASE 3, RecQl3 0.627 -0.808
45 248738_at AT5G48020 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.599 0.271
46 247081_at AT5G66130 ATRAD17, RADIATION SENSITIVE 17, RAD17, RADIATION SENSITIVE 17 0.591 -0.004
47 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.584 -1.057
48 264867_at AT1G24150 ATFH4, FORMIN HOMOLOGUE 4, FH4, formin homologue 4 0.576 -0.825
49 256285_at AT3G12510 [MADS-box family protein] 0.569 0.890
50 260223_at AT1G74390 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.545 -0.336
51 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.538 0.080
52 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.537 0.252
53 264252_at AT1G09180 ATSAR1, SECRETION-ASSOCIATED RAS 1, ATSARA1A, secretion-associated RAS super family 1, SARA1A, secretion-associated RAS super family 1 0.532 -0.170
54 250136_at AT5G15380 DRM1, domains rearranged methylase 1 0.508 -0.360
55 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.505 -1.101
56 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.501 -0.799
57 262873_at AT1G64700 unknown 0.494 -0.666
58 264116_at AT2G31320 PARP1, POLY(ADP-RIBOSE) POLYMERASE 1 0.483 0.743
59 256981_at AT3G13380 BRL3, BRI1-like 3 0.476 -0.866
60 261367_at AT1G53080 [Legume lectin family protein] 0.475 -0.765
61 257502_at AT1G78110 unknown 0.475 -0.216
62 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.474 -0.876
63 267410_at AT2G34920 EDA18, embryo sac development arrest 18 0.459 -0.149
64 257086_at AT3G20490 unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). 0.456 1.089
65 251987_at AT3G53280 CYP71B5, cytochrome p450 71b5 0.443 0.505
66 266595_at AT2G46180 GC4, golgin candidate 4 0.442 0.187
67 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.437 -0.298
68 265373_at AT2G06510 ATRPA1A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, ATRPA70A, ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, RPA1A, replication protein A 1A, RPA70A, RPA70-KDA SUBUNIT A 0.429 -0.604
69 251354_at AT3G61090 [Putative endonuclease or glycosyl hydrolase] 0.427 0.192
70 264694_at AT1G70250 [receptor serine/threonine kinase, putative] 0.427 -0.474
71 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] 0.425 -0.137
72 252421_at AT3G47540 [Chitinase family protein] 0.425 -0.544
73 255872_at AT2G30360 CIPK11, CBL-INTERACTING PROTEIN KINASE 11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SOS3-interacting protein 4, SNRK3.22, SNF1-RELATED PROTEIN KINASE 3.22 0.423 -0.203
74 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.420 -0.519
75 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] 0.419 -1.607
76 259915_at AT1G72790 [hydroxyproline-rich glycoprotein family protein] 0.419 0.239
77 263476_at AT2G31870 PARG1, poly(ADP-ribose) glycohydrolase 1, TEJ, Sanskrit for 'bright' 0.407 -0.668
78 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.394 0.681
79 248607_at AT5G49480 ATCP1, Ca2+-binding protein 1, CP1, Ca2+-binding protein 1 0.393 0.456
80 261043_at AT1G01220 AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, FKGP, L-fucokinase/GDP-L-fucose pyrophosphorylase 0.388 0.315
81 246558_at AT5G15540 ATSCC2, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, EMB2773, EMBRYO DEFECTIVE 2773, SCC2, SISTER-CHROMATID COHESION 2 0.384 -0.296
82 248940_at AT5G45400 ATRPA70C, RPA70C 0.377 -0.449
83 249139_at AT5G43170 AZF3, zinc-finger protein 3, ZF3, zinc-finger protein 3 0.369 -0.061
84 257401_at AT1G23550 SRO2, similar to RCD one 2 0.366 -0.017
85 256188_at AT1G30160 unknown 0.366 -0.601
86 261327_at AT1G44830 [Integrase-type DNA-binding superfamily protein] 0.366 -0.167
87 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.365 -0.974
88 266063_at AT2G18760 CHR8, chromatin remodeling 8 0.364 -0.227
89 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.352 -0.793
90 256518_at AT1G66080 unknown 0.349 -0.298
91 250435_at AT5G10380 ATRING1, RING1 0.346 -0.571
92 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 0.339 0.992
93 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.989 -0.685
94 255265_at AT4G05190 ATK5, kinesin 5 -0.675 0.658
95 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 -0.661 1.118
96 252148_at AT3G51280 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.641 0.531
97 264802_at AT1G08560 ATSYP111, KN, KNOLLE, SYP111, syntaxin of plants 111 -0.631 -0.234
98 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.620 0.147
99 253480_at AT4G31840 AtENODL15, ENODL15, early nodulin-like protein 15 -0.597 0.099
100 248057_at AT5G55520 unknown -0.593 -0.355
101 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.559 0.156
102 261567_at AT1G33055 unknown -0.553 0.578
103 258480_at AT3G02640 unknown -0.540 0.865
104 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -0.539 -1.301
105 264377_at AT2G25060 AtENODL14, ENODL14, early nodulin-like protein 14 -0.537 0.112
106 261660_at AT1G18370 ATNACK1, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, HIK, HINKEL, NACK1, NPK1-ACTIVATING KINESIN 1 -0.531 0.525
107 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.526 -0.591
108 259290_at AT3G11520 CYC2, CYCLIN 2, CYCB1;3, CYCLIN B1;3 -0.525 -0.305
109 247134_at AT5G66230 [Chalcone-flavanone isomerase family protein] -0.525 0.469
110 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 -0.515 -0.449
111 245343_at AT4G15830 [ARM repeat superfamily protein] -0.508 -0.131
112 255460_at AT4G02800 unknown -0.506 0.518
113 246505_at AT5G16250 unknown -0.503 0.378
114 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.493 -0.680
115 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 -0.483 -1.079
116 252089_at AT3G52110 unknown -0.463 0.164
117 267636_at AT2G42110 unknown -0.439 -0.363
118 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.436 -0.381
119 262081_at AT1G59540 ZCF125 -0.435 -0.544
120 267618_at AT2G26760 CYCB1;4, Cyclin B1;4 -0.426 0.405
121 257740_at AT3G27330 [zinc finger (C3HC4-type RING finger) family protein] -0.416 0.358
122 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.412 -0.657
123 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 -0.401 -1.072
124 258067_at AT3G25980 AtMAD2, MAD2, MITOTIC ARREST-DEFICIENT 2 -0.395 -0.525
125 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A -0.391 -1.242
126 246415_at AT5G17160 unknown -0.391 0.389
127 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.389 0.450
128 259851_at AT1G72250 [Di-glucose binding protein with Kinesin motor domain] -0.387 -0.352
129 257134_at AT3G12870 unknown -0.387 0.253
130 256799_at AT3G18560 unknown -0.374 0.369
131 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.373 0.799
132 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.373 0.084
133 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 -0.369 -0.756
134 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 -0.366 0.430
135 259978_at AT1G76540 CDKB2;1, cyclin-dependent kinase B2;1 -0.365 -0.419
136 256602_at AT3G28310 unknown -0.362 0.023
137 253403_at AT4G32830 AtAUR1, ataurora1, AUR1, ataurora1 -0.360 0.212
138 259930_at AT1G34355 ATPS1, PARALLEL SPINDLE 1, PS1, PARALLEL SPINDLE 1 -0.360 -0.730
139 247039_at AT5G67270 ATEB1C, MICROTUBULE END BINDING PROTEIN 1, ATEB1H1, ATEB1-HOMOLOG1, EB1C, end binding protein 1C -0.359 -0.467
140 257005_at AT3G14190 CMR1, COPPER MODIFIED RESISTANCE 1 -0.358 0.078
141 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.355 0.506
142 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.345 -0.457
143 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 -0.341 -0.622
144 258471_at AT3G06030 ANP3, NPK1-related protein kinase 3, AtANP3, MAPKKK12, NP3, NPK1-related protein kinase 3 -0.339 -0.121
145 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] -0.332 -0.311
146 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 -0.326 -0.883
147 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 -0.326 -1.014
148 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.322 -0.722
149 265085_at AT1G03780 AtTPX2, TPX2, targeting protein for XKLP2 -0.318 -0.501
150 257645_at AT3G25790 [myb-like transcription factor family protein] -0.316 -0.136
151 251527_at AT3G58650 TRM7, TON1 Recruiting Motif 7 -0.313 -0.084
152 263552_x_at AT2G24980 EXT6, extensin 6 -0.311 -0.623
153 255410_at AT4G03100 [Rho GTPase activating protein with PAK-box/P21-Rho-binding domain] -0.310 -0.369
154 263421_at AT2G17230 EXL5, EXORDIUM like 5 -0.310 1.237
155 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 -0.304 -0.759
156 251010_at AT5G02550 unknown -0.303 0.580
157 257794_at AT3G27050 unknown -0.301 1.028
158 258098_at AT3G23670 KINESIN-12B, PAKRP1L -0.298 -0.452
159 264889_at AT1G23050 hydroxyproline-rich glycoprotein family protein -0.298 -0.825
160 253802_at AT4G28180 unknown -0.296 0.807
161 252077_at AT3G51720 unknown -0.293 0.164
162 248691_at AT5G48310 unknown -0.288 -0.678
163 245953_at AT5G28520 [Mannose-binding lectin superfamily protein] -0.282 0.374
164 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.282 0.334
165 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.281 0.299
166 254193_at AT4G23870 unknown -0.279 -0.828
167 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 -0.278 0.653
168 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 -0.278 -0.067
169 265877_at AT2G42380 ATBZIP34, BZIP34 -0.275 -0.716
170 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.265 -0.607
171 264238_at AT1G54740 unknown -0.263 -0.836
172 254561_at AT4G19160 unknown -0.261 1.037
173 267613_at AT2G26700 PID2, PINOID2 -0.259 -1.131
174 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.258 -0.797
175 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.255 -0.428
176 266695_at AT2G19810 AtOZF1, AtTZF2, OZF1, Oxidation-related Zinc Finger 1, TZF2, tandem zinc finger 2 -0.254 0.840
177 261947_at AT1G64470 [Ubiquitin-like superfamily protein] -0.247 -0.946
178 255726_at AT1G25530 [Transmembrane amino acid transporter family protein] -0.246 -0.092
179 252361_at AT3G48490 unknown -0.245 0.323
180 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 -0.243 -0.714
181 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 -0.243 0.637
182 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.241 0.737
183 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.239 -0.212
184 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 -0.238 0.231