4.0:Information of module
seedling 3h after Gamma WT
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006260 DNA replication BP 7.333e-08
GO:0006950 response to stress BP 9.038e-08
GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 1.980e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1903047 mitotic cell cycle process BP 7.863e-22
GO:0000278 mitotic cell cycle BP 5.401e-21
GO:0032506 cytokinetic process BP 9.568e-21
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
seedling 3h after Gamma WT		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 1.322 -0.348
2 248086_at AT5G55490 ATGEX1, GAMETE EXPRESSED PROTEIN 1, GEX1, gamete expressed protein 1 1.308 -0.066
3 254055_at AT4G25330 unknown 1.240 0.040
4 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 1.211 -0.081
5 250914_at AT5G03780 TRFL10, TRF-like 10 1.158 -0.049
6 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 1.089 0.059
7 249809_at AT5G23910 [ATP binding microtubule motor family protein] 1.075 -0.102
8 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 1.057 0.153
9 252539_at AT3G45730 unknown 1.039 -0.125
10 256442_at AT3G10930 unknown 1.036 -0.041
11 259409_at AT1G13330 AHP2, Arabidopsis Hop2 homolog 1.031 0.082
12 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 1.002 0.257
13 265926_at AT2G18600 [Ubiquitin-conjugating enzyme family protein] 0.980 -0.056
14 253733_at AT4G29170 ATMND1 0.972 -0.087
15 249326_at AT5G40840 AtRAD21.1, Sister chromatid cohesion 1 (SCC1) protein homolog 2, SYN2 0.936 -0.075
16 246132_at AT5G20850 ATRAD51, RAD51 0.929 -0.107
17 259607_at AT1G27940 ABCB13, ATP-binding cassette B13, PGP13, P-glycoprotein 13 0.894 -0.084
18 254287_at AT4G22960 unknown 0.891 -0.033
19 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.877 -0.071
20 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 0.870 -0.023
21 266511_at AT2G47680 [zinc finger (CCCH type) helicase family protein] 0.858 0.003
22 267026_at AT2G38340 DREB19, dehydration response element-binding protein 19 0.846 -0.032
23 258476_at AT3G02400 [SMAD/FHA domain-containing protein ] 0.844 0.058
24 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.837 -0.059
25 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.831 -0.013
26 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.807 0.057
27 252770_at AT3G42860 [zinc knuckle (CCHC-type) family protein] 0.807 0.002
28 261086_at AT1G17460 TRFL3, TRF-like 3 0.799 -0.137
29 251035_at AT5G02220 SMR4, SIAMESE-RELATED 4 0.784 -0.036
30 250372_at AT5G11460 unknown 0.784 0.139
31 253757_at AT4G28950 ARAC7, Arabidopsis RAC-like 7, ATRAC7, ATROP9, RAC7, ROP9, RHO-related protein from plants 9 0.770 -0.037
32 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.767 -0.140
33 267246_at AT2G30250 ATWRKY25, WRKY25, WRKY DNA-binding protein 25 0.759 0.128
34 254565_at AT4G19130 [Replication factor-A protein 1-related] 0.749 -0.029
35 263515_at AT2G21640 unknown 0.747 -0.067
36 252330_at AT3G48770 [DNA binding] 0.745 -0.148
37 246994_at AT5G67460 [O-Glycosyl hydrolases family 17 protein] 0.733 -0.123
38 245137_at AT2G45460 [SMAD/FHA domain-containing protein ] 0.710 -0.017
39 248641_at AT5G49110 unknown 0.710 -0.158
40 265449_at AT2G46610 At-RS31a, arginine/serine-rich splicing factor 31a, RS31a, arginine/serine-rich splicing factor 31a 0.709 -0.012
41 253044_at AT4G37290 unknown 0.686 0.070
42 248611_at AT5G49520 ATWRKY48, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY48, WRKY DNA-binding protein 48 0.684 -0.090
43 246600_at AT5G14930 SAG101, senescence-associated gene 101 0.664 -0.044
44 253157_at AT4G35740 ATRECQ3, A. THALIANA RECQ HELICASE 3, RecQl3 0.627 -0.119
45 248738_at AT5G48020 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.599 0.019
46 247081_at AT5G66130 ATRAD17, RADIATION SENSITIVE 17, RAD17, RADIATION SENSITIVE 17 0.591 0.056
47 259560_at AT1G21270 WAK2, wall-associated kinase 2 0.584 -0.002
48 264867_at AT1G24150 ATFH4, FORMIN HOMOLOGUE 4, FH4, formin homologue 4 0.576 -0.026
49 256285_at AT3G12510 [MADS-box family protein] 0.569 0.000
50 260223_at AT1G74390 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.545 0.053
51 259224_at AT3G07800 AtTK1a, TK1a, thymidine kinase 1a 0.538 0.328
52 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.537 -0.076
53 264252_at AT1G09180 ATSAR1, SECRETION-ASSOCIATED RAS 1, ATSARA1A, secretion-associated RAS super family 1, SARA1A, secretion-associated RAS super family 1 0.532 -0.123
54 250136_at AT5G15380 DRM1, domains rearranged methylase 1 0.508 0.176
55 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.505 0.082
56 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.501 0.114
57 262873_at AT1G64700 unknown 0.494 0.043
58 264116_at AT2G31320 PARP1, POLY(ADP-RIBOSE) POLYMERASE 1 0.483 -0.041
59 256981_at AT3G13380 BRL3, BRI1-like 3 0.476 0.081
60 261367_at AT1G53080 [Legume lectin family protein] 0.475 0.074
61 257502_at AT1G78110 unknown 0.475 0.167
62 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.474 0.137
63 267410_at AT2G34920 EDA18, embryo sac development arrest 18 0.459 0.031
64 257086_at AT3G20490 unknown protein; Has 754 Blast hits to 165 proteins in 64 species: Archae - 0; Bacteria - 48; Metazoa - 26; Fungi - 25; Plants - 36; Viruses - 0; Other Eukaryotes - 619 (source: NCBI BLink). 0.456 0.068
65 251987_at AT3G53280 CYP71B5, cytochrome p450 71b5 0.443 -0.045
66 266595_at AT2G46180 GC4, golgin candidate 4 0.442 0.004
67 259514_at AT1G12480 CDI3, CARBON DIOXIDE INSENSITIVE 3, OZS1, OZONE-SENSITIVE 1, RCD3, RADICAL-INDUCED CELL DEATH 3, SLAC1, SLOW ANION CHANNEL-ASSOCIATED 1 0.437 0.044
68 265373_at AT2G06510 ATRPA1A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, ATRPA70A, ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, RPA1A, replication protein A 1A, RPA70A, RPA70-KDA SUBUNIT A 0.429 0.033
69 251354_at AT3G61090 [Putative endonuclease or glycosyl hydrolase] 0.427 0.036
70 264694_at AT1G70250 [receptor serine/threonine kinase, putative] 0.427 0.183
71 264522_at AT1G10050 [glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein] 0.425 -0.224
72 252421_at AT3G47540 [Chitinase family protein] 0.425 0.116
73 255872_at AT2G30360 CIPK11, CBL-INTERACTING PROTEIN KINASE 11, PKS5, PROTEIN KINASE SOS2-LIKE 5, SIP4, SOS3-interacting protein 4, SNRK3.22, SNF1-RELATED PROTEIN KINASE 3.22 0.423 -0.024
74 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.420 0.088
75 259211_at AT3G09020 [alpha 1,4-glycosyltransferase family protein] 0.419 -0.073
76 259915_at AT1G72790 [hydroxyproline-rich glycoprotein family protein] 0.419 0.042
77 263476_at AT2G31870 PARG1, poly(ADP-ribose) glycohydrolase 1, TEJ, Sanskrit for 'bright' 0.407 -0.048
78 265499_at AT2G15480 UGT73B5, UDP-glucosyl transferase 73B5 0.394 0.025
79 248607_at AT5G49480 ATCP1, Ca2+-binding protein 1, CP1, Ca2+-binding protein 1 0.393 -0.219
80 261043_at AT1G01220 AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, FKGP, L-fucokinase/GDP-L-fucose pyrophosphorylase 0.388 -0.105
81 246558_at AT5G15540 ATSCC2, ARABIDOPSIS THALIANA SISTER-CHROMATID COHESION 2, EMB2773, EMBRYO DEFECTIVE 2773, SCC2, SISTER-CHROMATID COHESION 2 0.384 0.048
82 248940_at AT5G45400 ATRPA70C, RPA70C 0.377 -0.076
83 249139_at AT5G43170 AZF3, zinc-finger protein 3, ZF3, zinc-finger protein 3 0.369 -0.190
84 257401_at AT1G23550 SRO2, similar to RCD one 2 0.366 -0.311
85 256188_at AT1G30160 unknown 0.366 -0.007
86 261327_at AT1G44830 [Integrase-type DNA-binding superfamily protein] 0.366 -0.116
87 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.365 0.065
88 266063_at AT2G18760 CHR8, chromatin remodeling 8 0.364 0.217
89 255502_at AT4G02410 AtLPK1, LecRK-IV.3, L-type lectin receptor kinase IV.3, LPK1, lectin-like protein kinase 1 0.352 -0.136
90 256518_at AT1G66080 unknown 0.349 -0.062
91 250435_at AT5G10380 ATRING1, RING1 0.346 -0.005
92 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 0.339 -0.064
93 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.989 -0.255
94 255265_at AT4G05190 ATK5, kinesin 5 -0.675 -0.253
95 254233_at AT4G23800 3xHMG-box2, 3xHigh Mobility Group-box2 -0.661 -0.061
96 252148_at AT3G51280 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.641 -0.135
97 264802_at AT1G08560 ATSYP111, KN, KNOLLE, SYP111, syntaxin of plants 111 -0.631 -0.149
98 260097_at AT1G73220 AtOCT1, organic cation/carnitine transporter1, OCT1, organic cation/carnitine transporter1 -0.620 -0.140
99 253480_at AT4G31840 AtENODL15, ENODL15, early nodulin-like protein 15 -0.597 0.009
100 248057_at AT5G55520 unknown -0.593 -0.155
101 262109_at AT1G02730 ATCSLD5, cellulose synthase-like D5, CSLD5, CELLULOSE SYNTHASE LIKE D5, CSLD5, cellulose synthase-like D5, SOS6, SALT OVERLY SENSITIVE 6 -0.559 -0.659
102 261567_at AT1G33055 unknown -0.553 -0.054
103 258480_at AT3G02640 unknown -0.540 0.025
104 253502_at AT4G31940 CYP82C4, cytochrome P450, family 82, subfamily C, polypeptide 4 -0.539 0.012
105 264377_at AT2G25060 AtENODL14, ENODL14, early nodulin-like protein 14 -0.537 0.110
106 261660_at AT1G18370 ATNACK1, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, HIK, HINKEL, NACK1, NPK1-ACTIVATING KINESIN 1 -0.531 -0.111
107 246557_at AT5G15510 [TPX2 (targeting protein for Xklp2) protein family] -0.526 -0.012
108 259290_at AT3G11520 CYC2, CYCLIN 2, CYCB1;3, CYCLIN B1;3 -0.525 0.049
109 247134_at AT5G66230 [Chalcone-flavanone isomerase family protein] -0.525 0.171
110 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 -0.515 -0.218
111 245343_at AT4G15830 [ARM repeat superfamily protein] -0.508 -0.105
112 255460_at AT4G02800 unknown -0.506 -0.145
113 246505_at AT5G16250 unknown -0.503 0.096
114 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.493 0.103
115 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 -0.483 -0.097
116 252089_at AT3G52110 unknown -0.463 -0.043
117 267636_at AT2G42110 unknown -0.439 0.061
118 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.436 0.093
119 262081_at AT1G59540 ZCF125 -0.435 0.137
120 267618_at AT2G26760 CYCB1;4, Cyclin B1;4 -0.426 0.084
121 257740_at AT3G27330 [zinc finger (C3HC4-type RING finger) family protein] -0.416 0.017
122 259977_at AT1G76590 [PLATZ transcription factor family protein] -0.412 -0.144
123 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 -0.401 -0.111
124 258067_at AT3G25980 AtMAD2, MAD2, MITOTIC ARREST-DEFICIENT 2 -0.395 -0.177
125 252081_at AT3G51910 AT-HSFA7A, ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, HSFA7A, heat shock transcription factor A7A -0.391 -0.078
126 246415_at AT5G17160 unknown -0.391 0.079
127 265478_at AT2G15890 MEE14, maternal effect embryo arrest 14 -0.389 -0.108
128 259851_at AT1G72250 [Di-glucose binding protein with Kinesin motor domain] -0.387 -0.282
129 257134_at AT3G12870 unknown -0.387 -0.146
130 256799_at AT3G18560 unknown -0.374 -0.020
131 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.373 -0.204
132 255381_at AT4G03510 ATRMA1, RMA1, RING membrane-anchor 1 -0.373 0.118
133 252078_at AT3G51740 IMK2, inflorescence meristem receptor-like kinase 2 -0.369 -0.060
134 247625_at AT5G60200 TMO6, TARGET OF MONOPTEROS 6 -0.366 -0.011
135 259978_at AT1G76540 CDKB2;1, cyclin-dependent kinase B2;1 -0.365 0.058
136 256602_at AT3G28310 unknown -0.362 0.014
137 253403_at AT4G32830 AtAUR1, ataurora1, AUR1, ataurora1 -0.360 0.068
138 259930_at AT1G34355 ATPS1, PARALLEL SPINDLE 1, PS1, PARALLEL SPINDLE 1 -0.360 -0.064
139 247039_at AT5G67270 ATEB1C, MICROTUBULE END BINDING PROTEIN 1, ATEB1H1, ATEB1-HOMOLOG1, EB1C, end binding protein 1C -0.359 0.068
140 257005_at AT3G14190 CMR1, COPPER MODIFIED RESISTANCE 1 -0.358 -0.065
141 251169_at AT3G63210 MARD1, MEDIATOR OF ABA-REGULATED DORMANCY 1 -0.355 0.108
142 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] -0.345 -0.001
143 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 -0.341 -0.030
144 258471_at AT3G06030 ANP3, NPK1-related protein kinase 3, AtANP3, MAPKKK12, NP3, NPK1-related protein kinase 3 -0.339 0.099
145 257823_at AT3G25190 [Vacuolar iron transporter (VIT) family protein] -0.332 -0.216
146 266479_at AT2G31160 LSH3, LIGHT SENSITIVE HYPOCOTYLS 3, OBO1, ORGAN BOUNDARY 1 -0.326 -0.171
147 251113_at AT5G01370 ACI1, ALC-interacting protein 1, TRM29, TON1 Recruiting Motif 29 -0.326 -0.165
148 267260_at AT2G23130 AGP17, arabinogalactan protein 17, ATAGP17 -0.322 0.027
149 265085_at AT1G03780 AtTPX2, TPX2, targeting protein for XKLP2 -0.318 -0.074
150 257645_at AT3G25790 [myb-like transcription factor family protein] -0.316 -0.003
151 251527_at AT3G58650 TRM7, TON1 Recruiting Motif 7 -0.313 -0.030
152 263552_x_at AT2G24980 EXT6, extensin 6 -0.311 -0.131
153 255410_at AT4G03100 [Rho GTPase activating protein with PAK-box/P21-Rho-binding domain] -0.310 0.043
154 263421_at AT2G17230 EXL5, EXORDIUM like 5 -0.310 0.130
155 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 -0.304 0.005
156 251010_at AT5G02550 unknown -0.303 -0.169
157 257794_at AT3G27050 unknown -0.301 -0.061
158 258098_at AT3G23670 KINESIN-12B, PAKRP1L -0.298 -0.161
159 264889_at AT1G23050 hydroxyproline-rich glycoprotein family protein -0.298 -0.046
160 253802_at AT4G28180 unknown -0.296 -0.198
161 252077_at AT3G51720 unknown -0.293 0.251
162 248691_at AT5G48310 unknown -0.288 -0.122
163 245953_at AT5G28520 [Mannose-binding lectin superfamily protein] -0.282 0.042
164 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 -0.282 0.006
165 267006_at AT2G34190 [Xanthine/uracil permease family protein] -0.281 0.013
166 254193_at AT4G23870 unknown -0.279 0.017
167 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 -0.278 0.154
168 259845_at AT1G73590 ATPIN1, ARABIDOPSIS THALIANA PIN-FORMED 1, PIN1, PIN-FORMED 1 -0.278 0.156
169 265877_at AT2G42380 ATBZIP34, BZIP34 -0.275 0.088
170 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.265 -0.070
171 264238_at AT1G54740 unknown -0.263 0.139
172 254561_at AT4G19160 unknown -0.261 0.032
173 267613_at AT2G26700 PID2, PINOID2 -0.259 0.112
174 252167_at AT3G50560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.258 -0.051
175 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.255 -0.288
176 266695_at AT2G19810 AtOZF1, AtTZF2, OZF1, Oxidation-related Zinc Finger 1, TZF2, tandem zinc finger 2 -0.254 0.053
177 261947_at AT1G64470 [Ubiquitin-like superfamily protein] -0.247 0.062
178 255726_at AT1G25530 [Transmembrane amino acid transporter family protein] -0.246 0.080
179 252361_at AT3G48490 unknown -0.245 -0.148
180 256131_at AT1G13600 AtbZIP58, basic leucine-zipper 58, bZIP58, basic leucine-zipper 58 -0.243 0.136
181 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 -0.243 -0.075
182 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.241 0.092
183 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.239 0.082
184 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 -0.238 0.002