4.0:Information of module
bbx24 in Simulated Shade
In comparison with 2d red light grown pif1pif3pif4pif5 (pifq) mutant help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010054 trichoblast differentiation BP 1.357e-05
GO:0010053 root epidermal cell differentiation BP 1.950e-05
GO:0090627 plant epidermal cell differentiation BP 2.465e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010193 response to ozone BP 4.440e-05
GO:0005984 disaccharide metabolic process BP 7.768e-04
GO:0009668 plastid membrane organization BP 7.768e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
bbx24 in Simulated Shade		 Log2 signal ratio
2d red light grown pif1pif3pif4pif5 (pifq) mutant
1 254534_at AT4G19680 ATIRT2, IRON REGULATED TRANSPORTER 2, IRT2, iron regulated transporter 2 0.335 -0.035
2 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 0.279 -0.083
3 259064_at AT3G07490 AGD11, ARF-GAP domain 11, AtCML3, CML3, calmodulin-like 3 0.251 -0.208
4 246993_at AT5G67450 AZF1, zinc-finger protein 1, ZF1, zinc-finger protein 1 0.239 -0.048
5 250778_at AT5G05500 MOP10 0.202 -0.037
6 245172_at AT2G47540 [Pollen Ole e 1 allergen and extensin family protein] 0.195 -0.011
7 259964_at AT1G53680 ATGSTU28, glutathione S-transferase TAU 28, GSTU28, glutathione S-transferase TAU 28 0.194 -0.081
8 258362_at AT3G14280 unknown 0.194 -0.107
9 253931_at AT4G26770 [Phosphatidate cytidylyltransferase family protein] 0.191 0.027
10 264415_at AT1G43160 RAP2.6, related to AP2 6 0.175 -0.053
11 258178_at AT3G21680 unknown 0.174 -0.131
12 263614_at AT2G25240 AtCCP3, CCP3, conserved in ciliated species and in the land plants 3 0.172 -0.088
13 254025_at AT4G25790 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.170 0.011
14 252187_at AT3G50850 [Putative methyltransferase family protein] 0.169 -0.004
15 264551_at AT1G09460 [Carbohydrate-binding X8 domain superfamily protein] 0.151 -0.089
16 256913_at AT3G23870 unknown 0.149 -0.058
17 254467_at AT4G20450 [Leucine-rich repeat protein kinase family protein] 0.144 -0.030
18 254173_at AT4G24580 REN1, ROP1 ENHANCER 1 0.136 0.030
19 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 0.133 -0.046
20 247581_at AT5G61350 [Protein kinase superfamily protein] 0.131 -0.023
21 260558_at AT2G43600 [Chitinase family protein] 0.131 0.016
22 259291_at AT3G11550 CASP2, Casparian strip membrane domain protein 2 0.130 0.031
23 263546_at AT2G21550 [Bifunctional dihydrofolate reductase/thymidylate synthase] 0.122 -0.156
24 251107_at AT5G01610 unknown 0.121 -0.091
25 261647_at AT1G27740 RSL4, root hair defective 6-like 4 0.121 0.025
26 260956_at AT1G06040 BBX24, B-box domain protein 24, STO, SALT TOLERANCE -0.827 0.038
27 258063_at AT3G14620 CYP72A8, cytochrome P450, family 72, subfamily A, polypeptide 8 -0.222 0.023
28 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] -0.202 0.148
29 247718_at AT5G59310 LTP4, lipid transfer protein 4 -0.199 0.068
30 251005_at AT5G02590 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.156 -0.140
31 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] -0.111 -0.061
32 250174_at AT5G14380 AGP6, arabinogalactan protein 6 -0.100 0.051
33 261936_at AT1G22600 [Late embryogenesis abundant protein (LEA) family protein] -0.098 0.045
34 266677_at AT2G29820 [Galactose oxidase/kelch repeat superfamily protein] -0.096 0.043
35 255034_at AT4G09540 [copia-like retrotransposon family, has a 1.7e-43 P-value blast match to GB:AAC64917 gag-pol polyprotein (Ty1_Copia-element) (Glycine max)] -0.091 -0.018
36 258318_at AT3G22680 RDM1, RNA-DIRECTED DNA METHYLATION 1 -0.087 -0.044
37 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 -0.086 0.041
38 250014_at AT5G17990 pat1, PHOSPHORIBOSYLANTHRANILATE TRANSFERASE 1, TRP1, tryptophan biosynthesis 1 -0.083 0.009
39 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 -0.083 0.045
40 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.080 0.028
41 253869_at AT4G27510 unknown -0.069 -0.007
42 258996_at AT3G01800 [Ribosome recycling factor] -0.069 0.044
43 261737_at AT1G47885 [Ribonuclease inhibitor] -0.069 -0.046
44 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.068 -0.016
45 256969_at AT3G21080 [ABC transporter-related] -0.068 0.059
46 253544_at AT4G31280 unknown -0.068 0.053
47 264737_at AT1G62210 unknown -0.066 0.018
48 254639_at AT4G18750 DOT4, DEFECTIVELY ORGANIZED TRIBUTARIES 4 -0.065 0.022
49 260021_at AT1G30010 nMAT1, nuclear maturase 1 -0.065 -0.009
50 261077_at AT1G07430 AIP1, AKT1 interacting protein phosphatase 1, AtAIP1, HAI2, highly ABA-induced PP2C gene 2, HON, HONSU (Korean for abnormal drowsiness) -0.065 0.112