4.0:Information of module
KO-nudx19 leaves
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0045786 negative regulation of cell cycle BP 5.316e-04
GO:0006275 regulation of DNA replication BP 9.594e-03
GO:0007049 cell cycle BP 1.099e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0031425 chloroplast RNA processing BP 3.744e-04
GO:0071901 negative regulation of protein serine/th... BP 3.184e-03
GO:0006469 negative regulation of protein kinase ac... BP 3.673e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
KO-nudx19 leaves		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 0.186 0.150
2 256593_at AT3G28510 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.181 -0.030
3 265260_at AT2G43000 ANAC042, NAC domain containing protein 42, JUB1, JUNGBRUNNEN 1, NAC042, NAC domain containing protein 42 0.175 0.112
4 248186_at AT5G53880 unknown 0.163 0.055
5 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.156 -0.001
6 249287_at AT5G41250 [Exostosin family protein] 0.152 0.051
7 245794_at AT1G32170 XTH30, xyloglucan endotransglucosylase/hydrolase 30, XTR4, xyloglucan endotransglycosylase 4 0.145 -0.061
8 250028_at AT5G18130 unknown 0.141 0.007
9 267209_at AT2G30930 unknown 0.134 -0.009
10 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] 0.134 0.051
11 254524_at AT4G20000 [VQ motif-containing protein] 0.125 -0.002
12 260420_at AT1G69610 [FUNCTIONS IN: structural constituent of ribosome] 0.120 -0.004
13 250951_at AT5G03550 unknown 0.119 0.067
14 246929_at AT5G25210 unknown 0.118 0.005
15 251165_at AT3G63340 [Protein phosphatase 2C family protein] 0.117 -0.003
16 255335_at AT4G04430 [CACTA-like transposase family (Ptta/En/Spm), has a 8.6e-122 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.116 0.013
17 260139_at AT1G66380 AtMYB114, myb domain protein 114, MYB114, myb domain protein 114 0.115 -0.019
18 257917_at AT3G23220 ESE1, ethylene and salt inducible 1 0.115 -0.103
19 248569_at AT5G49770 [Leucine-rich repeat protein kinase family protein] 0.114 0.015
20 256349_at AT1G54890 [Late embryogenesis abundant (LEA) protein-related] 0.113 0.013
21 264447_at AT1G27300 unknown 0.112 0.013
22 255171_at AT4G07990 [Chaperone DnaJ-domain superfamily protein] 0.112 0.051
23 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.112 0.016
24 251606_at AT3G57840 [Plant self-incompatibility protein S1 family] 0.110 0.036
25 266787_at AT2G28990 [Leucine-rich repeat protein kinase family protein] 0.110 -0.000
26 246941_at AT5G25415 unknown 0.109 0.001
27 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 0.108 -0.003
28 251247_at AT3G62140 unknown 0.107 0.019
29 263950_at AT2G36020 HVA22J, HVA22-like protein J 0.106 0.046
30 249308_at AT5G41350 [RING/U-box superfamily protein] 0.105 -0.025
31 264283_at AT1G61850 [phospholipases] 0.103 -0.031
32 257471_at AT1G59530 ATBZIP4, basic leucine-zipper 4, bZIP4, basic leucine-zipper 4 0.101 -0.059
33 249848_at AT5G23220 NIC3, nicotinamidase 3 0.101 0.015
34 246366_at AT1G51850 [Leucine-rich repeat protein kinase family protein] 0.101 0.023
35 265874_at AT2G01640 unknown 0.101 0.041
36 262268_at AT1G42410 [CACTA-like transposase family (Ptta/En/Spm), has a 1.0e-124 P-value blast match to At5g36655.1/81-333 CACTA-like transposase family (Ptta/En/Spm) (CACTA-element) (Arabidopsis thaliana)] 0.099 -0.007
37 264777_at AT1G08630 THA1, threonine aldolase 1 0.096 0.020
38 247869_at AT5G57520 ATZFP2, ZINC FINGER PROTEIN 2, ZFP2, zinc finger protein 2 0.096 -0.051
39 251908_at AT3G53770 [late embryogenesis abundant 3 (LEA3) family protein] 0.095 0.016
40 267385_at AT2G44380 [Cysteine/Histidine-rich C1 domain family protein] 0.095 -0.030
41 260600_at AT1G55950 [DNA-binding storekeeper protein-related transcriptional regulator] 0.095 -0.058
42 246413_at AT1G77310 unknown 0.095 0.037
43 267345_at AT2G44240 unknown 0.094 0.029
44 246108_at AT5G28630 [glycine-rich protein] 0.094 0.033
45 256586_at AT3G28770 unknown 0.093 0.006
46 259595_at AT1G28050 BBX13, B-box domain protein 13 0.093 -0.023
47 249586_at AT5G37840 unknown 0.092 0.077
48 265718_at AT2G03340 WRKY3, WRKY DNA-binding protein 3 0.092 -0.022
49 262179_at AT1G77980 AGL66, AGAMOUS-like 66 0.090 -0.008
50 245556_at AT4G15400 ABS1, ABNORMAL SHOOT 1, BIA1, BRASSINOSTEROID INACTIVATOR1 0.090 0.007
51 246761_at AT5G27980 [Seed maturation protein] 0.089 0.115
52 259110_at AT3G05570 unknown 0.089 0.047
53 255463_at AT4G02960 ATRE2, retro element 2, RE2, retro element 2 0.089 -0.076
54 260869_at AT1G43800 FTM1, FLORAL TRANSITION AT THE MERISTEM1, SAD6, STEAROYL-ACYL CARRIER PROTEIN Δ9-DESATURASE6 -0.264 0.018
55 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 -0.184 -0.010
56 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.176 0.031
57 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.167 0.031
58 254574_at AT4G19430 unknown -0.157 0.088
59 266668_at AT2G29760 OTP81, ORGANELLE TRANSCRIPT PROCESSING 81 -0.155 -0.077
60 253723_at AT4G29240 [Leucine-rich repeat (LRR) family protein] -0.155 0.073
61 263448_at AT2G31660 EMA1, enhanced miRNA activity 1, SAD2, SUPER SENSITIVE TO ABA AND DROUGHT2, URM9, UNARMED 9 -0.153 -0.033
62 250176_at AT5G14400 CYP724A1, cytochrome P450, family 724, subfamily A, polypeptide 1 -0.152 -0.026
63 247200_at AT5G65120 unknown -0.147 0.002
64 251909_at AT3G53790 TRFL4, TRF-like 4 -0.146 0.075
65 263016_at AT1G23410 [Ribosomal protein S27a / Ubiquitin family protein] -0.143 0.049
66 267159_at AT2G37650 [GRAS family transcription factor] -0.142 -0.003
67 257619_at AT3G24810 ICK3, KRP5, kip-related protein 5 -0.142 0.061
68 265865_at AT2G01740 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.141 0.040
69 257735_at AT3G27400 [Pectin lyase-like superfamily protein] -0.139 0.003
70 257931_at AT3G17030 [Nucleic acid-binding proteins superfamily] -0.137 0.053
71 248020_at AT5G56490 AtGulLO4, GulLO4, L -gulono-1,4-lactone ( L -GulL) oxidase 4 -0.137 0.023
72 267371_at AT2G44510 [CDK inhibitor P21 binding protein] -0.133 -0.010
73 249707_at AT5G35640 [Putative endonuclease or glycosyl hydrolase] -0.131 -0.003
74 244923_s_at ATMG01020 ORF153B -0.129 0.020
75 251900_at AT3G54430 SRS6, SHI-related sequence 6 -0.128 0.024
76 247962_at AT5G56580 ANQ1, ARABIDOPSIS NQK1, ATMKK6, ARABIDOPSIS THALIANA MAP KINASE KINASE 6, MKK6, MAP kinase kinase 6 -0.126 -0.041
77 248638_at AT5G49070 KCS21, 3-ketoacyl-CoA synthase 21 -0.123 -0.030
78 245569_at AT4G14660 NRPE7 -0.122 0.017
79 260523_at AT2G41720 EMB2654, EMBRYO DEFECTIVE 2654 -0.120 -0.018
80 246274_at AT4G36620 GATA19, GATA transcription factor 19, HANL2, hanaba taranu like 2 -0.119 0.020
81 245343_at AT4G15830 [ARM repeat superfamily protein] -0.119 -0.001
82 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 -0.117 -0.000
83 259823_at AT1G66250 [O-Glycosyl hydrolases family 17 protein] -0.114 0.003
84 259930_at AT1G34355 ATPS1, PARALLEL SPINDLE 1, PS1, PARALLEL SPINDLE 1 -0.114 -0.005
85 251119_at AT3G63510 [FMN-linked oxidoreductases superfamily protein] -0.112 -0.005
86 247344_at AT5G63750 ARI13, ARIADNE 13, ATARI13, ARABIDOPSIS ARIADNE 13 -0.111 -0.026
87 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 -0.110 0.083
88 246266_at AT1G31817 NFD3, NUCLEAR FUSION DEFECTIVE 3 -0.109 0.009
89 262596_at AT1G15080 ATLPP2, LIPID PHOSPHATE PHOSPHATASE 2, ATPAP2, PHOSPHATIDIC ACID PHOSPHATASE 2, LPP2, lipid phosphate phosphatase 2 -0.108 -0.018
90 262922_at AT1G79420 unknown -0.108 0.008
91 264634_at AT1G65670 CYP702A1, cytochrome P450, family 702, subfamily A, polypeptide 1 -0.107 0.038
92 254986_at AT4G10640 IQD16, IQ-domain 16 -0.103 0.065
93 263146_at AT1G53940 GLIP2, GDSL-motif lipase 2 -0.103 -0.036
94 257744_at AT3G29230 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.103 -0.068
95 253589_at AT4G30825 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.102 -0.057
96 260392_at AT1G74030 ENO1, enolase 1 -0.101 -0.002
97 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 -0.100 0.021
98 251631_at AT3G57430 OTP84, ORGANELLE TRANSCRIPT PROCESSING 84 -0.100 0.004
99 249182_at AT5G42960 unknown -0.100 0.041
100 255007_at AT4G10020 AtHSD5, hydroxysteroid dehydrogenase 5, HSD5, hydroxysteroid dehydrogenase 5 -0.098 -0.086
101 247628_at AT5G60400 unknown -0.098 0.057
102 245937_at AT5G19750 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.097 0.039
103 267304_at AT2G30080 ATZIP6, ZIP6 -0.096 -0.020
104 257543_at AT3G28960 [Transmembrane amino acid transporter family protein] -0.095 0.005
105 265195_at AT2G36730 [Pentatricopeptide repeat (PPR) superfamily protein] -0.095 -0.008