AT4G16515 : root meristem growth factor 6
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G16515
Description Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 1 0.31 -0.31
2 AT5G06930 LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in
313 species: Archae - 2; Bacteria - 910; Metazoa - 754;
Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes -
1219 (source: NCBI BLink).		 0.77 0.3 -0.32
3 AT5G07000 sulfotransferase 2B ARABIDOPSIS THALIANA
SULFOTRANSFERASE 2B,
sulfotransferase 2B		 0.77 0.33 -0.33
4 AT1G29450 SAUR-like auxin-responsive protein family 0.76 0.31 -0.31
5 AT1G04250 AUX/IAA transcriptional regulator family protein AUXIN RESISTANT 3, indole-3-acetic
acid inducible 17		 0.76 0.35 -0.32
6 AT5G25460 Protein of unknown function, DUF642 0.75 0.33 -0.31
7 AT3G22460 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 O-acetylserine (thiol) lyase
(OAS-TL) isoform A2		 -0.74 0.33 -0.3
8 AT5G15160 BANQUO 2 BASIC HELIX-LOOP-HELIX PROTEIN
134, BANQUO 2		 0.74 0.31 -0.33
9 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 -0.74 0.32 -0.3
10 AT4G14560 indole-3-acetic acid inducible AUXIN RESISTANT 5, indole-3-acetic
acid inducible		 0.73 0.33 -0.31
11 AT3G55005 tonneau 1b (TON1b) tonneau 1b 0.72 0.31 -0.33
12 AT1G29440 SAUR-like auxin-responsive protein family 0.72 0.3 -0.31
13 AT1G04240 AUX/IAA transcriptional regulator family protein indole-3-acetic acid inducible 3,
SHORT HYPOCOTYL 2		 0.71 0.33 -0.3
14 AT3G23050 indole-3-acetic acid 7 AUXIN RESISTANT 2, indole-3-acetic
acid 7		 0.71 0.32 -0.31
15 AT5G38780 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.33 -0.29
16 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.7 0.31 -0.32
17 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.34 -0.32
18 AT2G20810 galacturonosyltransferase 10 galacturonosyltransferase 10, LGT4 0.68 0.31 -0.33
19 AT5G12040 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 -0.68 0.32 -0.32
20 AT5G12050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.68 0.31 -0.31
21 AT4G30410 sequence-specific DNA binding transcription factors 0.67 0.31 -0.34
22 AT3G03840 SAUR-like auxin-responsive protein family 0.67 0.3 -0.32
23 AT3G21400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; Has 29 Blast hits to 29 proteins in 12 species:
Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants -
27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.32 -0.3
24 AT3G56800 calmodulin 3 CALMODULIN 3, calmodulin 3 0.67 0.29 -0.34
25 AT4G38850 SAUR-like auxin-responsive protein family ARABIDOPSIS THALIANA SMALL AUXIN
UPREGULATED 15, ARABIDOPSIS
COLUMBIA SAUR GENE 1, SMALL AUXIN
UPREGULATED 15, SMALL AUXIN UP RNA
1 FROM ARABIDOPSIS THALIANA
ECOTYPE COLUMBIA		 0.67 0.29 -0.32
26 AT1G31820 Amino acid permease family protein -0.67 0.31 -0.31
27 AT2G40610 expansin A8 ATEXP8, expansin A8, ATHEXP ALPHA
1.11, EXP8, expansin A8		 0.67 0.31 -0.32
28 AT1G61810 beta-glucosidase 45 beta-glucosidase 45 -0.66 0.34 -0.3
29 AT3G60690 SAUR-like auxin-responsive protein family -0.66 0.33 -0.35
30 AT4G03760 transposable element gene 0.66 0.31 -0.31
31 AT1G69160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 173 Blast hits
to 172 proteins in 54 species: Archae - 0; Bacteria - 0;
Metazoa - 25; Fungi - 33; Plants - 84; Viruses - 2; Other
Eukaryotes - 29 (source: NCBI BLink).		 0.66 0.32 -0.32
32 AT1G29500 SAUR-like auxin-responsive protein family 0.66 0.32 -0.3
33 AT5G24010 Protein kinase superfamily protein -0.66 0.3 -0.32
34 AT4G29020 glycine-rich protein 0.66 0.32 -0.33
35 AT2G25760 Protein kinase family protein -0.65 0.32 -0.33
36 AT4G22300 carboxylesterases SUPPRESSOR OF AVRBST-ELICITED
RESISTANCE 1		 0.65 0.32 -0.32
37 AT2G35880 TPX2 (targeting protein for Xklp2) protein family 0.65 0.32 -0.31
38 AT1G59830 protein phosphatase 2A-2 protein phosphatase 2A-2 0.65 0.33 -0.32
39 AT5G29000 Homeodomain-like superfamily protein PHR1-like 1 -0.65 0.31 -0.3
40 AT5G02550 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.65 0.3 -0.33
41 AT1G29510 SAUR-like auxin-responsive protein family SMALL AUXIN UPREGULATED 68 0.65 0.31 -0.3
42 AT3G62330 Zinc knuckle (CCHC-type) family protein -0.65 0.3 -0.3
43 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 -0.65 0.32 -0.33
44 AT3G61640 arabinogalactan protein 20 arabinogalactan protein 20,
Arabinogalactan protein 20		 0.64 0.32 -0.31
45 AT4G22640 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.64 0.31 -0.32
46 AT1G06520 glycerol-3-phosphate acyltransferase 1 ATGPAT1, glycerol-3-phosphate
acyltransferase 1		 -0.64 0.31 -0.31
47 AT5G66590 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 0.64 0.3 -0.31
48 AT3G05800 AtBS1(activation-tagged BRI1 suppressor 1)-interacting
factor 1		 AtBS1(activation-tagged BRI1
suppressor 1)-interacting factor 1		 0.64 0.32 -0.33
49 AT4G20110 VACUOLAR SORTING RECEPTOR 7 binding protein of 80 kDa 3;1,
VACUOLAR SORTING RECEPTOR 3;1,
VACUOLAR SORTING RECEPTOR 7		 -0.64 0.32 -0.33
50 AT1G48330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits
to 40 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.63 0.31 -0.31
51 AT5G36910 thionin 2.2 thionin 2.2 0.63 0.33 -0.32
52 AT5G53550 YELLOW STRIPE like 3 YELLOW STRIPE LIKE 3, YELLOW
STRIPE like 3		 -0.63 0.32 -0.32
53 AT5G47560 tonoplast dicarboxylate transporter ATSDAT, TONOPLAST DICARBOXYLATE
TRANSPORTER, tonoplast
dicarboxylate transporter		 -0.62 0.33 -0.32
54 AT5G13460 IQ-domain 11 IQ-domain 11 0.62 0.29 -0.33
55 AT3G17330 evolutionarily conserved C-terminal region 6 evolutionarily conserved
C-terminal region 6		 0.62 0.31 -0.32
56 AT5G37610 Eukaryotic porin family protein -0.62 0.3 -0.31
57 AT4G15410 serine/threonine protein phosphatase 2A 55 kDa regulatory
subunit B prime gamma		 serine/threonine protein
phosphatase 2A 55 kDa regulatory
subunit B prime gamma		 0.62 0.31 -0.31
58 AT4G18920 Protein of unknown function (DUF1264) 0.62 0.32 -0.31
59 AT3G26160 cytochrome P450, family 71, subfamily B, polypeptide 17 cytochrome P450, family 71,
subfamily B, polypeptide 17		 -0.62 0.29 -0.32
60 AT4G04840 methionine sulfoxide reductase B6 methionine sulfoxide reductase B6,
methionine sulfoxide reductase B6		 0.62 0.33 -0.31
61 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 -0.62 0.33 -0.3
62 AT5G19810 Proline-rich extensin-like family protein 0.61 0.32 -0.31
63 AT3G25850 Cysteine/Histidine-rich C1 domain family protein 0.61 0.31 -0.32
64 AT4G04150 transposable element gene -0.61 0.31 -0.3
65 AT4G04480 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
flower, pollen tube; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: F-box family protein with a
domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has
78 Blast hits to 78 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.35 -0.32
66 AT1G48790 associated molecule with the SH3 domain of STAM 1 associated molecule with the SH3
domain of STAM 1		 -0.61 0.29 -0.33
67 AT5G12940 Leucine-rich repeat (LRR) family protein 0.61 0.3 -0.29
68 AT3G53390 Transducin/WD40 repeat-like superfamily protein -0.61 0.31 -0.29
69 AT2G36010 E2F transcription factor 3 ATE2FA, E2F transcription factor 3 0.61 0.32 -0.33
70 AT5G25370 phospholipase D alpha 3 phospholipase D alpha 3 0.61 0.31 -0.3
71 AT4G14550 indole-3-acetic acid inducible 14 indole-3-acetic acid inducible 14,
SOLITARY ROOT		 0.61 0.32 -0.31
72 AT4G12840 Protein of unknown function (DUF707) 0.61 0.31 -0.31
73 AT2G46610 RNA-binding (RRM/RBD/RNP motifs) family protein arginine/serine-rich splicing
factor 31a, arginine/serine-rich
splicing factor 31a		 -0.61 0.3 -0.31
74 AT2G36710 Pectin lyase-like superfamily protein 0.6 0.31 -0.34
75 AT1G16010 magnesium transporter 2 AtMGT2, AtMRS2-1, magnesium
transporter 2, MRS2-1		 -0.6 0.31 -0.3
76 AT4G12110 sterol-4alpha-methyl oxidase 1-1 ATSMO1-1, sterol-4alpha-methyl
oxidase 1-1		 0.6 0.31 -0.31
77 AT5G03455 Rhodanese/Cell cycle control phosphatase superfamily
protein		 ARSENATE REDUCTASE 2, ARATH;CDC25,
CDC25		 -0.6 0.3 -0.31
78 AT2G26410 IQ-domain 4 IQ-domain 4 0.6 0.31 -0.31
79 AT4G08620 sulphate transporter 1;1 sulphate transporter 1;1 0.6 0.32 -0.3
80 AT3G52130 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.59 0.32 -0.31
81 AT1G45160 Protein kinase superfamily protein -0.59 0.3 -0.33
82 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.59 0.32 -0.31
83 AT1G35183 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.59 0.31 -0.28
84 AT3G25840 Protein kinase superfamily protein -0.59 0.32 -0.3
85 AT1G31910 GHMP kinase family protein -0.58 0.32 -0.3
86 AT5G06100 myb domain protein 33 ATMYB33, myb domain protein 33 -0.58 0.33 -0.31
87 AT1G62810 Copper amine oxidase family protein -0.58 0.31 -0.31
88 AT5G25270 Ubiquitin-like superfamily protein -0.58 0.33 -0.32
89 AT2G25740 ATP-dependent protease La (LON) domain protein -0.58 0.31 -0.3
90 AT5G18840 Major facilitator superfamily protein -0.58 0.3 -0.31
91 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.57 0.29 -0.3
92 AT2G25360 RING/U-box superfamily protein -0.57 0.32 -0.31
93 AT4G09840 unknown protein; Has 25 Blast hits to 25 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 4;
Plants - 9; Viruses - 3; Other Eukaryotes - 5 (source: NCBI
BLink).		 -0.56 0.31 -0.27
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
94 C0124 Isonicotinic acid - - - -0.76 0.47 -0.48
95 C0050 8-Methylthio-n-octylglucosinolate - 8-Methylthiooctyl glucosinolate glucosinolate biosynthesis from hexahomomethionine 0.75 0.47 -0.46 C0050
96 C0211 PR_MST_2158.8 - - - -0.63 0.45 -0.43