AGICode | AT5G04280 |
Description | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
Gene Code | Description / Information | Gene name | Correlation | link | ||||
---|---|---|---|---|---|---|---|---|
pcc | 2.5% | 97.5% | PPI | |||||
1 | AT5G04280 | RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain |
AtRZ-1c, RZ-1c | 1 | 0.32 | -0.32 | ||
2 | AT2G31360 | 16:0delta9 desaturase 2 | 16:0delta9 desaturase 2, 16:0delta9 desaturase 2 |
0.81 | 0.34 | -0.32 | ||
3 | AT1G13020 | eukaryotic initiation factor 4B2 | eukaryotic initiation factor 4B2 | 0.79 | 0.31 | -0.31 | ||
4 | AT1G54380 | spliceosome protein-related | 0.76 | 0.3 | -0.28 | |||
5 | AT5G53400 | HSP20-like chaperones superfamily protein | BOBBER1 | 0.76 | 0.31 | -0.32 | ||
6 | AT3G01820 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
0.75 | 0.33 | -0.31 | |||
7 | AT4G34910 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
0.74 | 0.32 | -0.32 | |||
8 | AT3G07170 | Sterile alpha motif (SAM) domain-containing protein | 0.73 | 0.33 | -0.31 | |||
9 | AT1G06710 | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.72 | 0.31 | -0.32 | |||
10 | AT4G17090 | chloroplast beta-amylase | BETA-AMYLASE 3, BETA-AMYLASE 8, chloroplast beta-amylase |
0.72 | 0.33 | -0.33 | ||
11 | AT4G30935 | WRKY DNA-binding protein 32 | ATWRKY32, WRKY DNA-binding protein 32 |
0.72 | 0.32 | -0.33 | ||
12 | AT1G13690 | ATPase E1 | ATPase E1 | 0.72 | 0.31 | -0.31 | ||
13 | AT5G56740 | histone acetyltransferase of the GNAT family 2 | HAC07, HAC7, HAG02, histone acetyltransferase of the GNAT family 2 |
0.72 | 0.33 | -0.32 | ||
14 | AT1G80920 | Chaperone DnaJ-domain superfamily protein | AtJ8, translocon at the outer envelope membrane of chloroplasts 12, J8, translocon at the outer envelope membrane of chloroplasts 12 |
-0.71 | 0.35 | -0.3 | ||
15 | AT5G22330 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
ATTIP49A, RESISTANCE TO PSEUDOMONAS SYRINGAE PV MACULICOLA INTERACTOR 1 |
0.71 | 0.35 | -0.32 | ||
16 | AT3G05660 | receptor like protein 33 | receptor like protein 33, receptor like protein 33 |
0.71 | 0.34 | -0.31 | ||
17 | AT5G04670 | Enhancer of polycomb-like transcription factor protein | 0.71 | 0.32 | -0.3 | |||
18 | AT1G09415 | NIM1-interacting 3 | NIM1-interacting 3 | -0.71 | 0.33 | -0.32 | ||
19 | AT4G28480 | DNAJ heat shock family protein | 0.71 | 0.32 | -0.31 | |||
20 | AT1G49560 | Homeodomain-like superfamily protein | 0.7 | 0.32 | -0.32 | |||
21 | AT4G14900 | FRIGIDA-like protein | 0.7 | 0.32 | -0.3 | |||
22 | AT5G48250 | B-box type zinc finger protein with CCT domain | 0.7 | 0.32 | -0.31 | |||
23 | AT3G44110 | DNAJ homologue 3 | ATJ, DNAJ homologue 3, J3 | 0.7 | 0.31 | -0.33 | ||
24 | AT2G19190 | FLG22-induced receptor-like kinase 1 | FLG22-induced receptor-like kinase 1 |
0.7 | 0.33 | -0.31 | ||
25 | AT1G07360 | CCCH-type zinc fingerfamily protein with RNA-binding domain | MOS4-associated complex subunit 5A | 0.7 | 0.32 | -0.31 | ||
26 | AT4G38580 | farnesylated protein 6 | farnesylated protein 6, farnesylated protein 6, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 |
0.7 | 0.32 | -0.3 | ||
27 | AT2G28720 | Histone superfamily protein | 0.7 | 0.31 | -0.32 | |||
28 | AT3G09440 | Heat shock protein 70 (Hsp 70) family protein | 0.7 | 0.29 | -0.33 | |||
29 | AT4G31880 | LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). |
0.7 | 0.32 | -0.32 | |||
30 | AT4G39260 | cold, circadian rhythm, and RNA binding 1 | GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1, glycine-rich RNA-binding protein 8, GRP8 |
0.7 | 0.34 | -0.31 | ||
31 | AT5G59950 | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.7 | 0.33 | -0.31 | |||
32 | AT5G57460 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to 166 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). |
0.69 | 0.31 | -0.28 | |||
33 | AT1G19370 | unknown protein; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). |
0.68 | 0.31 | -0.3 | |||
34 | AT1G32860 | Glycosyl hydrolase superfamily protein | 0.68 | 0.31 | -0.32 | |||
35 | AT1G70290 | trehalose-6-phosphatase synthase S8 | ATTPS8, ATTPSC, trehalose-6-phosphatase synthase S8 |
-0.68 | 0.32 | -0.32 | ||
36 | AT3G56360 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast hits to 45 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.67 | 0.33 | -0.31 | |||
37 | AT4G35310 | calmodulin-domain protein kinase 5 | ATCPK5, calmodulin-domain protein kinase 5 |
0.67 | 0.32 | -0.31 | ||
38 | AT4G02570 | cullin 1 | cullin 1, AUXIN RESISTANT 6, cullin 1 |
0.67 | 0.32 | -0.32 | ||
39 | AT4G31270 | sequence-specific DNA binding transcription factors | -0.67 | 0.33 | -0.33 | |||
40 | AT2G21520 | Sec14p-like phosphatidylinositol transfer family protein | 0.67 | 0.31 | -0.31 | |||
41 | AT2G12550 | ubiquitin-associated (UBA)/TS-N domain-containing protein | homolog of human NUB1 | 0.66 | 0.31 | -0.32 | ||
42 | AT3G27670 | ARM repeat superfamily protein | RESURRECTION1 | -0.66 | 0.31 | -0.31 | ||
43 | AT4G12640 | RNA recognition motif (RRM)-containing protein | 0.66 | 0.32 | -0.31 | |||
44 | AT2G33730 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
0.66 | 0.32 | -0.29 | |||
45 | AT3G57320 | unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.66 | 0.32 | -0.3 | |||
46 | AT3G17980 | Calcium-dependent lipid-binding (CaLB domain) family protein |
Arabidopsis thaliana C2 domain, C2 domain |
-0.65 | 0.31 | -0.34 | ||
47 | AT5G13760 | Plasma-membrane choline transporter family protein | -0.65 | 0.31 | -0.33 | |||
48 | AT5G65120 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
0.65 | 0.32 | -0.31 | |||
49 | AT3G12280 | retinoblastoma-related 1 | RETINOBLASTOMA-RELATED PROTEIN 1, RB, RETINOBLASTOMA 1, RETINOBLASTOMA-RELATED, retinoblastoma-related 1 |
0.65 | 0.32 | -0.32 | ||
50 | AT5G58760 | damaged DNA binding 2 | damaged DNA binding 2 | 0.64 | 0.31 | -0.29 | ||
51 | AT3G27550 | RNA-binding CRS1 / YhbY (CRM) domain protein | 0.64 | 0.28 | -0.32 | |||
52 | AT1G13560 | aminoalcoholphosphotransferase 1 | aminoalcoholphosphotransferase 1, ATAAPT1 |
0.64 | 0.32 | -0.35 | ||
53 | AT5G41600 | VIRB2-interacting protein 3 | VIRB2-interacting protein 3, Reticulan like protein B4 |
0.64 | 0.31 | -0.33 | ||
54 | AT4G14690 | Chlorophyll A-B binding family protein | EARLY LIGHT-INDUCIBLE PROTEIN 2 | 0.64 | 0.31 | -0.31 | ||
55 | AT3G22840 | Chlorophyll A-B binding family protein | ELIP, EARLY LIGHT-INDUCABLE PROTEIN |
0.64 | 0.3 | -0.33 | ||
56 | AT1G02330 | CONTAINS InterPro DOMAIN/s: Hepatocellular carcinoma-associated antigen 59 (InterPro:IPR010756); Has 1239 Blast hits to 998 proteins in 204 species: Archae - 4; Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink). |
0.64 | 0.33 | -0.31 | |||
57 | AT2G45170 | AUTOPHAGY 8E | AUTOPHAGY 8E, AUTOPHAGY 8E | -0.64 | 0.31 | -0.3 | ||
58 | AT3G02700 | NC domain-containing protein-related | -0.63 | 0.31 | -0.31 | |||
59 | AT2G17870 | cold shock domain protein 3 | ARABIDOPSIS COLD SHOCK DOMAIN PROTEIN 3, cold shock domain protein 3 |
0.63 | 0.31 | -0.34 | ||
60 | AT2G31380 | salt tolerance homologue | salt tolerance homologue | 0.63 | 0.32 | -0.34 | ||
61 | AT3G07390 | auxin-responsive family protein | Auxin-Induced in Root cultures 12 | 0.63 | 0.3 | -0.33 | ||
62 | AT5G63110 | histone deacetylase 6 | HISTONE DEACETYLASE 6, AXE1, histone deacetylase 6, RPD3B, RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, SIL1 |
0.63 | 0.3 | -0.34 | ||
63 | AT3G06850 | 2-oxoacid dehydrogenases acyltransferase family protein | BCE2, DARK INDUCIBLE 3, LTA1 | -0.63 | 0.32 | -0.31 | ||
64 | AT5G43440 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
0.63 | 0.32 | -0.31 | |||
65 | AT4G38960 | B-box type zinc finger family protein | 0.63 | 0.3 | -0.33 | |||
66 | AT5G57670 | Protein kinase superfamily protein | -0.63 | 0.32 | -0.31 | |||
67 | AT1G54680 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27290.1); Has 200 Blast hits to 200 proteins in 57 species: Archae - 0; Bacteria - 59; Metazoa - 0; Fungi - 0; Plants - 127; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). |
-0.62 | 0.3 | -0.3 | |||
68 | AT1G28320 | protease-related | DEG15 | -0.62 | 0.33 | -0.31 | ||
69 | AT5G45370 | nodulin MtN21 /EamA-like transporter family protein | -0.62 | 0.32 | -0.32 | |||
70 | AT3G52480 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). |
-0.61 | 0.32 | -0.3 | |||
71 | AT3G17510 | CBL-interacting protein kinase 1 | CBL-interacting protein kinase 1, SNF1-RELATED PROTEIN KINASE 3.16 |
-0.6 | 0.31 | -0.32 | ||
72 | AT5G55810 | nicotinate/nicotinamide mononucleotide adenyltransferase | nicotinate/nicotinamide mononucleotide adenyltransferase, nicotinate/nicotinamide mononucleotide adenyltransferase |
-0.6 | 0.3 | -0.31 | ||
73 | AT5G05700 | arginine-tRNA protein transferase 1 | ATATE1, arginine-tRNA protein transferase 1, DELAYED LEAF SENESCENCE 1 |
-0.59 | 0.31 | -0.29 | ||
74 | AT3G47000 | Glycosyl hydrolase family protein | -0.58 | 0.31 | -0.32 | |||
75 | AT2G41760 | unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function WDYHV (InterPro:IPR019161); Has 201 Blast hits to 201 proteins in 90 species: Archae - 0; Bacteria - 2; Metazoa - 132; Fungi - 10; Plants - 30; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). |
-0.58 | 0.32 | -0.32 | |||
76 | AT1G11160 | Transducin/WD40 repeat-like superfamily protein | -0.56 | 0.33 | -0.31 | |||
77 | AT1G19025 | DNA repair metallo-beta-lactamase family protein | -0.56 | 0.32 | -0.34 | |||
78 | AT1G59520 | CW7 | CW7 | -0.56 | 0.34 | -0.31 | ||
79 | AT5G40890 | chloride channel A | chloride channel A, ATCLCA, chloride channel A, CHLORIDE CHANNEL-A, CHLORIDE CHANNEL A |
-0.56 | 0.32 | -0.3 | ||
80 | AT4G01450 | nodulin MtN21 /EamA-like transporter family protein | -0.55 | 0.32 | -0.33 | |||
81 | AT1G55520 | TATA binding protein 2 | A. THALIANA TATA BINDING PROTEIN 2, TATA binding protein 2 |
-0.54 | 0.34 | -0.32 | ||
82 | AT5G05800 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
-0.54 | 0.31 | -0.31 |
CID | Metabolite name | Pathway Information | Correlation | link | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Compound name | Stereochemistry | Aracyc name | pcc | 2.5% | 97.5% | PPI | ||||
83 | C0053 | ADP | - | ADP | phosphatidylcholine biosynthesis I, mannitol degradation II, lipid IVA biosynthesis, stachyose degradation, Rubisco shunt, copper transport II, glycerol degradation IV, chorismate biosynthesis, folate polyglutamylation II, galactose degradation III, D-myo-inositol (1,4,5)-trisphosphate biosynthesis, UDP-L-arabinose biosynthesis II (from L-arabinose), cadmium transport I, folate polyglutamylation, coenzyme A biosynthesis, sulfate activation for sulfonation, 1,4-dihydroxy-2-naphthoate biosynthesis II (plants), pyrimidine deoxyribonucleotides de novo biosynthesis I, galactose degradation II, inosine-5'-phosphate biosynthesis II, ribose degradation, acetyl-CoA biosynthesis (from citrate), inositol pyrophosphates biosynthesis, fatty acid biosynthesis initiation I, xylose degradation I, adenine and adenosine salvage VI, TCA cycle variation III (eukaryotic), tetrahydrofolate biosynthesis II, phosphatidylethanolamine biosynthesis II, pyridoxal 5'-phosphate salvage pathway, citrulline biosynthesis, trans-zeatin biosynthesis, glutamine biosynthesis I, arginine biosynthesis II (acetyl cycle), L-Ndelta-acetylornithine biosynthesis, mevalonate pathway I, methionine biosynthesis II, trehalose degradation II (trehalase), citrulline degradation, methionine salvage pathway, TCA cycle variation V (plant), chlorophyllide a biosynthesis I, starch degradation I, methylerythritol phosphate pathway, pyridine nucleotide cycling (plants), ceramide degradation, biotin-carboxyl carrier protein assembly, purine nucleotide metabolism (phosphotransfer and nucleotide modification), UDP-D-galacturonate biosynthesis II (from D-galacturonate), asparagine biosynthesis III (tRNA-dependent), superpathway of glyoxylate cycle and fatty acid degradation, NAD/NADH phosphorylation and dephosphorylation, 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3), galactose degradation I (Leloir pathway), uridine-5'-phosphate biosynthesis, lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3), sucrose degradation III, lysine biosynthesis VI, sphingolipid biosynthesis (plants), choline biosynthesis I, GDP-glucose biosynthesis, photorespiration, gamma-glutamyl cycle (plant pathway), 5-aminoimidazole ribonucleotide biosynthesis I, gamma-glutamyl cycle, thiamine biosynthesis II, proline biosynthesis III, glutathione biosynthesis, folate transformations II, ornithine biosynthesis, diphthamide biosynthesis, S-methyl-5'-thioadenosine degradation I, starch biosynthesis, arginine biosynthesis I, homoserine biosynthesis, flavin biosynthesis I (bacteria and plants), sucrose biosynthesis I, leucine degradation I, glycolysis I, pyrimidine ribonucleotides interconversion, 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza), glycolysis IV (plant cytosol), Calvin-Benson-Bassham cycle, UDP-D-glucuronate biosynthesis (from myo-inositol), guanine and guanosine salvage III, glutamine biosynthesis III, L-glutamine biosynthesis II (tRNA-dependent), GDP-L-fucose biosynthesis II (from L-fucose), nitrate reduction II (assimilatory), ammonia assimilation cycle II, gluconeogenesis I, threonine biosynthesis from homoserine, mannose degradation, urea cycle, lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3), biotin biosynthesis II |
-0.64 | 0.42 | -0.44 | ||
84 | C0149 | Mevalonolactone | D,L-Mevalonolactone | - | terpenoid biosynthesis | -0.64 | 0.46 | -0.45 |