AT5G28490 : LIGHT-DEPENDENT SHORT HYPOCOTYLS 1
Query Information
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AGICode AT5G28490
Description Protein of unknown function (DUF640)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G28490 Protein of unknown function (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS
1, ORGAN BOUNDARY 2		 1 0.33 -0.32
2 AT1G27590 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana
protein match is: phosphatidylinositol 3- and 4-kinase
family protein (TAIR:AT1G27570.1); Has 109 Blast hits to
109 proteins in 38 species: Archae - 0; Bacteria - 0;
Metazoa - 65; Fungi - 4; Plants - 38; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.64 0.3 -0.34
3 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 0.62 0.31 -0.3
4 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 0.61 0.31 -0.32
5 AT5G45500 RNI-like superfamily protein 0.6 0.33 -0.3
6 AT3G16120 Dynein light chain type 1 family protein 0.59 0.31 -0.32
7 AT1G54920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.3 -0.3
8 AT2G38830 Ubiquitin-conjugating enzyme/RWD-like protein 0.59 0.33 -0.28
9 AT5G52480 RNI-like superfamily protein 0.57 0.31 -0.32
10 AT5G03200 RING/U-box superfamily protein 0.57 0.3 -0.33
11 AT1G33290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.56 0.33 -0.33
12 ATMG00740 hypothetical protein ORF100A -0.55 0.31 -0.32
13 AT1G27510 Protein of unknown function (DUF3506) -0.55 0.31 -0.32
14 AT2G03110 RNA binding;nucleic acid binding -0.55 0.31 -0.29
15 AT1G71930 vascular related NAC-domain protein 7 Arabidopsis NAC domain containing
protein 30, vascular related
NAC-domain protein 7		 0.55 0.31 -0.33
16 AT5G50830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 11 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, 4 anthesis, C globular stage,
petal differentiation and expansion stage; Has 4984 Blast
hits to 3288 proteins in 342 species: Archae - 12; Bacteria
- 257; Metazoa - 1366; Fungi - 452; Plants - 199; Viruses -
77; Other Eukaryotes - 2621 (source: NCBI BLink).		 -0.55 0.31 -0.31
17 AT5G14870 cyclic nucleotide-gated channel 18 CYCLIC NUCLEOTIDE-GATED CHANNEL
18, cyclic nucleotide-gated
channel 18		 0.54 0.31 -0.34
18 AT4G26680 Tetratricopeptide repeat (TPR)-like superfamily protein -0.53 0.31 -0.32
19 AT4G29050 Concanavalin A-like lectin protein kinase family protein 0.53 0.33 -0.34
20 AT5G02720 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G53490.1); Has 47 Blast hits
to 47 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.53 0.31 -0.3
21 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 -0.53 0.32 -0.34
22 AT1G12790 CONTAINS InterPro DOMAIN/s: RuvA domain 2-like
(InterPro:IPR010994); Has 29 Blast hits to 29 proteins in 9
species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.53 0.31 -0.33
23 AT2G32780 ubiquitin-specific protease 1 ATUBP1, ubiquitin-specific
protease 1		 -0.53 0.33 -0.31
24 AT3G31300 transposable element gene -0.53 0.3 -0.32
25 AT2G18260 syntaxin of plants 112 ATSYP112, syntaxin of plants 112 -0.53 0.3 -0.3
26 AT2G30070 potassium transporter 1 potassium transporter 1, ATKT1P,
ATKUP1, potassium transporter 1,
POTASSIUM UPTAKE TRANSPORTER 1		 -0.52 0.32 -0.3
27 AT3G52970 cytochrome P450, family 76, subfamily G, polypeptide 1 cytochrome P450, family 76,
subfamily G, polypeptide 1		 0.52 0.31 -0.3
28 AT4G07360 transposable element gene -0.52 0.33 -0.33
29 AT5G07770 Actin-binding FH2 protein 0.52 0.31 -0.29
30 AT4G21100 damaged DNA binding protein 1B damaged DNA binding protein 1B -0.52 0.31 -0.3
31 AT1G12520 copper chaperone for SOD1 copper chaperone for SOD1, copper
chaperone for SOD1		 0.52 0.32 -0.32
32 AT3G11370 Cysteine/Histidine-rich C1 domain family protein 0.52 0.34 -0.29
33 AT2G14170 aldehyde dehydrogenase 6B2 aldehyde dehydrogenase 6B2 -0.52 0.32 -0.33
34 AT3G60170 transposable element gene 0.51 0.31 -0.31
35 AT1G07110 fructose-2,6-bisphosphatase ATF2KP,
fructose-2,6-bisphosphatase, FKFBP		 -0.51 0.32 -0.33
36 AT1G22910 RNA-binding (RRM/RBD/RNP motifs) family protein 0.51 0.33 -0.28
37 AT4G05510 transposable element gene -0.5 0.32 -0.32
38 AT1G24040 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.5 0.34 -0.3
39 AT4G33020 ZIP metal ion transporter family ATZIP9, ZIP9 0.5 0.32 -0.3
40 AT2G02250 phloem protein 2-B2 phloem protein 2-B2, phloem
protein 2-B2		 -0.5 0.32 -0.33
41 AT1G10800 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: inflorescence meristem,
hypocotyl, root, flower; EXPRESSED DURING: petal
differentiation and expansion stage; Has 23 Blast hits to
23 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink).		 0.5 0.32 -0.34
42 AT2G46310 cytokinin response factor 5 cytokinin response factor 5 -0.5 0.3 -0.32
43 AT1G52770 Phototropic-responsive NPH3 family protein -0.49 0.31 -0.31
44 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 -0.49 0.32 -0.32
45 AT2G26720 Cupredoxin superfamily protein 0.49 0.31 -0.33
46 AT1G36000 LOB domain-containing protein 5 LOB domain-containing protein 5 0.49 0.33 -0.33
47 AT3G28150 TRICHOME BIREFRINGENCE-LIKE 22 ALTERED XYLOGLUCAN 4-LIKE,
TRICHOME BIREFRINGENCE-LIKE 22		 0.49 0.3 -0.32
48 AT2G22450 riboflavin biosynthesis protein, putative -0.49 0.31 -0.33
49 AT1G74860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits
to 193 proteins in 61 species: Archae - 0; Bacteria - 9;
Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other
Eukaryotes - 49 (source: NCBI BLink).		 -0.49 0.31 -0.3
50 AT1G33817 transposable element gene -0.49 0.31 -0.31
51 AT5G63720 kokopelli KOKOPELLI -0.48 0.31 -0.31
52 AT1G37140 MEI2 C-terminal RRM only like 1 MEI2 C-terminal RRM only like 1 0.48 0.31 -0.32
53 AT2G07738 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.48 0.33 -0.31
54 AT1G11630 Tetratricopeptide repeat (TPR)-like superfamily protein -0.48 0.34 -0.33
55 AT2G42030 RING/U-box superfamily protein -0.48 0.33 -0.31
56 AT3G49930 C2H2 and C2HC zinc fingers superfamily protein 0.48 0.34 -0.31
57 AT1G33080 MATE efflux family protein 0.47 0.31 -0.3
58 AT4G37330 cytochrome P450, family 81, subfamily D, polypeptide 4 cytochrome P450, family 81,
subfamily D, polypeptide 4		 -0.47 0.31 -0.3
59 AT4G13190 Protein kinase superfamily protein 0.47 0.31 -0.3
60 AT3G01890 SWIB/MDM2 domain superfamily protein -0.47 0.32 -0.31
61 AT3G17490 F-box and associated interaction domains-containing protein -0.47 0.33 -0.3
62 AT1G56150 SAUR-like auxin-responsive protein family -0.47 0.31 -0.33
63 AT3G50730 Protein kinase superfamily protein -0.47 0.33 -0.33
64 AT1G76370 Protein kinase superfamily protein -0.46 0.32 -0.3
65 AT3G07790 DGCR14-related -0.46 0.31 -0.33
66 AT5G41720 BEST Arabidopsis thaliana protein match is: F-box
protein-related (TAIR:AT1G64290.1); Has 70 Blast hits to 70
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.46 0.3 -0.32
67 AT2G47570 Ribosomal protein L18e/L15 superfamily protein 0.46 0.32 -0.32
68 AT2G15300 Leucine-rich repeat protein kinase family protein 0.46 0.3 -0.29
69 AT2G38950 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 -0.46 0.34 -0.31
70 AT2G05660 transposable element gene 0.46 0.32 -0.32
71 AT5G02200 far-red-elongated hypocotyl1-like far-red-elongated hypocotyl1-like 0.46 0.3 -0.31
72 AT1G56200 embryo defective 1303 embryo defective 1303 -0.46 0.33 -0.32
73 AT3G58530 RNI-like superfamily protein -0.46 0.29 -0.32
74 AT2G31085 CLAVATA3/ESR-RELATED 6 AtCLE6, CLAVATA3/ESR-RELATED 6 0.46 0.33 -0.33
75 AT4G15630 Uncharacterised protein family (UPF0497) 0.45 0.31 -0.3
76 AT2G06200 growth-regulating factor 6 growth-regulating factor 6,
growth-regulating factor 6		 0.45 0.32 -0.3
77 AT1G60240 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.45 0.31 -0.32
78 AT2G13330 transposable element gene 0.45 0.31 -0.29
79 AT3G57620 glyoxal oxidase-related protein 0.44 0.29 -0.32
80 AT3G31310 transposable element gene 0.43 0.35 -0.33
81 AT5G38330 low-molecular-weight cysteine-rich 80 low-molecular-weight cysteine-rich
80		 0.43 0.34 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
82 C0079 Digalactosyldiacylglycerol-34:5 - Digalactosyldiacylglycerol-34:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.73 0.44 -0.46 C0079
83 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.69 0.46 -0.44 C0186
84 C0180 MST_2539.9 - - - -0.69 0.45 -0.49
85 C0169 MST_2105.7 - - - -0.67 0.46 -0.43
86 C0116 Hydroxylamine - Hydroxylamine - 0.66 0.47 -0.47 C0116
87 C0161 MST_1566.3 - - - -0.66 0.45 -0.48
88 C0081 Digalactosyldiacylglycerol-36:2 - Digalactosyldiacylglycerol-36:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.66 0.51 -0.48 C0081
89 C0160 MST_1509.5 - - - -0.65 0.47 -0.46
90 C0080 Digalactosyldiacylglycerol-34:6 - Digalactosyldiacylglycerol-34:6 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.65 0.45 -0.45 C0080
91 C0163 MST_1589.2 - - - -0.64 0.43 -0.44
92 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.63 0.48 -0.47 C0073
93 C0159 MST_1505.6 - - - -0.62 0.43 -0.44
94 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		-0.62 0.32 -0.31 C0060
95 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.6 0.42 -0.48 C0088
96 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		-0.58 0.32 -0.32 C0101
97 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.57 0.43 -0.45 C0027
98 C0062 Betain - - - -0.5 0.31 -0.29
99 C0069 Citrulline - Citrulline citrulline-nitric oxide cycle,
citrulline biosynthesis,
nitric oxide biosynthesis I (in plants),
urea cycle,
citrulline degradation,
arginine biosynthesis II (acetyl cycle),
arginine biosynthesis I 		-0.49 0.33 -0.31 C0069