AT4G36480 : long-chain base1
Query Information
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AGICode AT4G36480
Description long-chain base1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G36480 long-chain base1 long-chain base1, EMBRYO DEFECTIVE
2779, FUMONISIN B1 RESISTANT 11,
long-chain base1		 1 0.32 -0.33
2 AT5G26830 Threonyl-tRNA synthetase 0.69 0.31 -0.33
3 AT5G24760 GroES-like zinc-binding dehydrogenase family protein 0.62 0.31 -0.31
4 AT1G67550 urease urease -0.61 0.33 -0.31
5 AT1G65370 TRAF-like family protein -0.61 0.32 -0.33
6 AT1G64270 transposable element gene -0.6 0.29 -0.31
7 AT1G66540 Cytochrome P450 superfamily protein -0.6 0.33 -0.32
8 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 -0.6 0.29 -0.32
9 AT4G27050 F-box/RNI-like superfamily protein 0.59 0.3 -0.33
10 AT4G08480 mitogen-activated protein kinase kinase kinase 9 mitogen-activated protein kinase
kinase kinase 9, MAPK/ERK KINASE
KINASE 2		 -0.58 0.31 -0.31
11 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family -0.57 0.32 -0.31
12 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.57 0.33 -0.31
13 AT5G23460 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.57 0.35 -0.29
14 AT1G51430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits
to 13 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.57 0.34 -0.3
15 AT1G70570 anthranilate phosphoribosyltransferase, putative 0.57 0.33 -0.31
16 AT5G17880 disease resistance protein (TIR-NBS-LRR class) constitutive shade-avoidance1 -0.57 0.33 -0.29
17 AT5G20450 CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710);
BEST Arabidopsis thaliana protein match is: Myosin family
protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast
hits to 1458 proteins in 355 species: Archae - 28; Bacteria
- 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses -
3; Other Eukaryotes - 412 (source: NCBI BLink).		 -0.57 0.3 -0.29
18 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 -0.56 0.33 -0.32
19 AT2G21550 Bifunctional dihydrofolate reductase/thymidylate synthase -0.56 0.31 -0.29
20 AT1G58150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: in 9 processes; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.56 0.3 -0.3
21 AT1G62830 LSD1-like 1 ARABIDOPSIS LYSINE-SPECIFIC
HISTONE DEMETHYLASE, ATSWP1,
LSD1-like 1, LYSINE-SPECIFIC
HISTONE DEMETHYLASE, SWP1		 -0.55 0.32 -0.31
22 AT5G08535 D111/G-patch domain-containing protein -0.55 0.3 -0.31
23 AT1G33840 Protein of unknown function (DUF567) -0.55 0.32 -0.3
24 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein 0.55 0.3 -0.3
25 AT5G17910 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G29620.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.55 0.32 -0.32
26 AT5G06280 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.55 0.34 -0.31
27 AT5G55180 O-Glycosyl hydrolases family 17 protein 0.55 0.32 -0.32
28 AT5G22510 alkaline/neutral invertase alkaline/neutral invertase E,
Arabidopsis alkaline/neutral
invertase E, alkaline/neutral
invertase E		 -0.54 0.32 -0.31
29 AT4G11830 phospholipase D gamma 2 phospholipase D gamma 2 -0.54 0.31 -0.31
30 AT5G03200 RING/U-box superfamily protein -0.54 0.35 -0.31
31 AT5G05750 DNAJ heat shock N-terminal domain-containing protein -0.53 0.3 -0.33
32 AT5G58400 Peroxidase superfamily protein -0.52 0.33 -0.3
33 AT5G35840 phytochrome C phytochrome C -0.52 0.32 -0.31
34 AT5G23230 nicotinamidase 2 nicotinamidase 2 -0.52 0.32 -0.3
35 AT4G31570 CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053);
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G24460.1); Has 194354 Blast hits to 66887 proteins
in 3244 species: Archae - 3688; Bacteria - 38556; Metazoa -
84828; Fungi - 17265; Plants - 10589; Viruses - 805; Other
Eukaryotes - 38623 (source: NCBI BLink).		 0.52 0.29 -0.31
36 AT4G03820 Protein of unknown function (DUF3537) -0.51 0.29 -0.32
37 AT5G35450 Disease resistance protein (CC-NBS-LRR class) family -0.51 0.32 -0.33
38 AT5G24530 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 DOWNY MILDEW RESISTANT 6 -0.51 0.32 -0.3
39 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 -0.51 0.29 -0.31
40 AT4G13050 Acyl-ACP thioesterase -0.51 0.29 -0.31
41 AT4G13630 Protein of unknown function, DUF593 -0.5 0.34 -0.32
42 AT1G78970 lupeol synthase 1 ARABIDOPSIS THALIANA LUPEOL
SYNTHASE 1, lupeol synthase 1		 -0.5 0.33 -0.32
43 AT1G59960 NAD(P)-linked oxidoreductase superfamily protein -0.5 0.33 -0.32
44 AT3G30180 brassinosteroid-6-oxidase 2 brassinosteroid-6-oxidase 2,
CYP85A2		 0.49 0.31 -0.34
45 AT5G27110 Tetratricopeptide repeat (TPR)-like superfamily protein -0.49 0.32 -0.33
46 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.49 0.29 -0.33
47 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 -0.49 0.35 -0.33
48 AT2G42720 FBD, F-box, Skp2-like and Leucine Rich Repeat domains
containing protein		 0.49 0.31 -0.3
49 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 -0.48 0.31 -0.32
50 AT5G07770 Actin-binding FH2 protein -0.48 0.31 -0.32
51 AT4G12460 OSBP(oxysterol binding protein)-related protein 2B OSBP(oxysterol binding
protein)-related protein 2B		 -0.48 0.32 -0.31
52 AT5G40155 Defensin-like (DEFL) family protein -0.48 0.29 -0.31
53 AT5G25910 receptor like protein 52 receptor like protein 52, receptor
like protein 52		 -0.48 0.34 -0.31
54 AT1G62850 Class I peptide chain release factor -0.47 0.31 -0.31
55 AT4G22280 F-box/RNI-like superfamily protein 0.47 0.32 -0.29
56 AT5G10270 cyclin-dependent kinase C;1 cyclin-dependent kinase C;1 0.46 0.33 -0.33
57 AT1G79000 histone acetyltransferase of the CBP family 1 ARABIDOPSIS HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 1, ARABIDOPSIS THALIANA
P300/CBP ACETYLTRANSFERASE-RELATED
PROTEIN 2, histone
acetyltransferase of the CBP
family 1, P300/CBP
ACETYLTRANSFERASE-RELATED PROTEIN
2		 -0.46 0.31 -0.33
58 AT4G12840 Protein of unknown function (DUF707) -0.46 0.31 -0.34
59 AT1G80960 F-box and Leucine Rich Repeat domains containing protein -0.45 0.33 -0.29
60 AT3G07530 CONTAINS InterPro DOMAIN/s: Beta-Casp domain
(InterPro:IPR022712); BEST Arabidopsis thaliana protein
match is: cleavage and polyadenylation specificity factor
73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to
615 proteins in 160 species: Archae - 54; Bacteria - 6;
Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other
Eukaryotes - 94 (source: NCBI BLink).		 0.45 0.31 -0.31
61 AT4G11830 phospholipase D gamma 2 phospholipase D gamma 2 -0.45 0.33 -0.31
62 AT4G15710 unknown protein; Has 18 Blast hits to 18 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.45 0.32 -0.3
63 AT4G29050 Concanavalin A-like lectin protein kinase family protein -0.44 0.31 -0.31
64 AT4G09680 conserved telomere maintenance component 1 ATCTC1, conserved telomere
maintenance component 1		 -0.44 0.31 -0.31
65 AT1G65280 DNAJ heat shock N-terminal domain-containing protein -0.44 0.31 -0.32
66 AT1G69550 disease resistance protein (TIR-NBS-LRR class) -0.43 0.3 -0.33
67 AT5G42280 Cysteine/Histidine-rich C1 domain family protein -0.43 0.32 -0.3
68 AT1G64300 Protein kinase family protein -0.43 0.33 -0.32
69 AT3G42540 transposable element gene 0.42 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
70 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine -0.82 0.45 -0.46 C0038
71 C0207 Phosphatidylglycerol-34:5 - - - 0.74 0.47 -0.47
72 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.69 0.43 -0.46 C0033
73 C0037 5-Methylsulfinyl-n-pentylglucosinolate - 5-Methylsulfinylpentyl glucosinolate glucosinolate biosynthesis from trihomomethionine -0.6 0.3 -0.3 C0037
74 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		-0.53 0.3 -0.34 C0244
75 C0034 4-Methylthio-n-butylglucosinolate - 4-Methylthiobutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.5 0.3 -0.31 C0034
76 C0040 6-Methylsulfinyl-n-hexylglucosinolate - 6-Methylsulfinylhexyl glucosinolate glucosinolate biosynthesis from tetrahomomethionine -0.49 0.32 -0.31 C0040